BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496511
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63280.1 | Symbols: | C2H2-like zinc finger protein | chr5:... 1520 0.0
AT5G63290.1 | Symbols: | Radical SAM superfamily protein | chr... 65.8 9e-10
> AT5G63280.1 | Symbols: | C2H2-like zinc finger protein | chr5:25367031-25369297
FORWARD LENGTH=1207
Length=1207
Score = 1520 bits (823), Expect = 0.0
Identities = 1083/1198 (90%), Gaps = 60/1198 (5%)
Strand=Plus/Plus
Query 1 TAGAAATTTTGCAGAAATCAAATTCTTGTCGCTAAAAT---CTCACAGCTCAATGGGAAG 57
|||||||||||||||||||||||| ||||||||||||| | ||||| || ||||||||
Sbjct 4 TAGAAATTTTGCAGAAATCAAATT-TTGTCGCTAAAATCCCCACACAGTTCGATGGGAAG 62
Query 58 ACTTTGTGAATCACTGCCCGTGATTCTTCTACTGTTTGCTCTTCTTCTCCATCAATCACT 117
|||||| |||||||||||||||||||||||||| || | ||||||||| ||||||||| |
Sbjct 63 ACTTTGGGAATCACTGCCCGTGATTCTTCTACTCTTAGTTCTTCTTCTTCATCAATCAGT 122
Query 118 CTCTCAGGGTTTTGAAGAATCTGAATCTACTAGATTGGTTAACGAAGAAGTAGGAG---G 174
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 123 CTCTCAGGGGTTTGAAGAATCTGAATCTACTAGATTGGTTAACGAAGAAGTAGAAGTTAG 182
Query 175 TAATTCTCCAGAAATACATTGTTCACGAGAAAGAAGCCGAGCAGCTTGGCAGATTATTCA 234
|||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 183 TAATGCTCCAGAAATACATTGTTCCCGAGAAAGAAGTCGAGCAGCTTGGCAGATTATACA 242
Query 235 AGATTATTTGACACCGTTTGTGGAACGGGAAAGATATCAAATTCCAAAGAATTGTAGGCT 294
|||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 243 AGATTATTTGACGCCATTTGTGGAACGGGAAAGATATGAAATTCCAAAAAATTGTAGGCT 302
Query 295 TCATCCTGATAATGATTTATACAGAGATCAGGAACAGCATAAGATTCACGTTGATGTCTT 354
||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 303 GCATCCTGATAATGATTTATACAGAGATCAGGAACATCATAAGGTTCATGTTGATGTCTT 362
Query 355 CGAATGGAAATGTGGTTACTGCAAGAAAAGTTTCAATGATGAGAAATTTCTTGACAAGCA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CGAATGGAAATGTGGTTACTGCAAGAAAAGTTTCAATGATGAGAAATTTCTTGACAAGCA 422
Query 415 TTTCAGCACTAGACATTATAATCTTTTGAATACGACTGATACAAAGTGTTTGGCCGACCT 474
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 423 TTTCAGTACTAGACATTATAATCTTTTAAATACGACTGATACAAAGTGTTTAGCCGACCT 482
Query 475 GTGTGGTGCATTGCATTGCGACTTTGTATTGAGCTCTAAGAAACCGAAGAGCAAGTGCAA 534
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 483 GTGTGGTGCATTGCATTGTGACTTTGTATTGAGCTCTAAGAAACCCAAGAGCAAGTGCAA 542
Query 535 CCCTGCC-GCTGTTGCCAAAAACCGTCATCTCTGCGAGAGCGTTGCCAATAGTTGTTTCC 593
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CCCT-CCTGCTGTTGCCAAAAACCGTCATCTCTGCGAGAGCGTTGCCAATAGTTGTTTCC 601
Query 594 CAGTGAGTCAAGGCCCCTCAGCTAGCCGTCTTCATGAACACTTTTTGCGCCAATTCTGTG 653
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 602 CAGTGAGTCAAGGTCCCTCAGCTAGTCGTCTTCATGAACACTTTTTGCGCCAATTCTGTG 661
Query 654 ACGCTCATACCTGCACTGGAAAAGATAAACCGTTTCCTAGAGGAGGCAAGAAGAAATCGG 713
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 662 ATGCTCATACCTGCACTGGAAATGATAAACCCTTTCCTAGAGGAGGCAAGAAGAAATCGG 721
Query 714 GTGTCTTCTACCTCGCCATTTCAATATTGACCTTGATGCTACTCCCACTCTTTTATCTTC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GTGTCTTCTACCTCGCCATTTCAATATTGACCTTGATGCTACTCCCACTCTTTTATCTTC 781
Query 774 TAGTCTTCTTATATCAAAGAGAAAAGAGAAGCGGAACACAAGAGTTGCGTCGGATTAGAA 833
||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 782 TAGTCTTCTTACATCAAAGAGAAAAGAGAAGCGGAACACAAGATTTGCGTCGTATTATAA 841
Query 834 AAACTGGaaaaaaaCCAAAACCTTCATAATATCGTAATCCTCTC-AA-T--T-ATGAGAG 888
|| ||||||||||| ||||||| |||||| || |||| || || || | | |||||
Sbjct 842 AATCTGGAAAAAAAACAAAACCGTCATAAGATGGTAA-GCT-TCAAACTGCTCTTGAGAT 899
Query 889 AGCAGAAGGTGTTCAAATCCGATATTGGTTTGGTGAAT--C--A----CCTC--T--TTC 936
| ||| | ||||||||||||||||||||||||||||| | | |||| | |||
Sbjct 900 A-CAG--GATGTTCAAATCCGATATTGGTTTGGTGAATCACAAATCTTCCTCATTACTTC 956
Query 937 -ACAT-T---A-C-TT-CTC--------CTTCTCGAACCAGATACTTATGGATTCCCAAA 980
||| | | | || ||| ||||| ||||||| ||||||||||| |||||
Sbjct 957 TCCATCTCAGACCTTTCCTCATTTGGTGTTTCTCAAACCAGAGACTTATGGATT-CCAAA 1015
Query 981 AGAGAGTGTTTCGT-TGGGGTTATGAAGCTAGTTGCTATGGATATCAGATGGATTACATA 1039
|||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CGAGAGTATTTC-TATGTGGTTATGAAGCTAGTTGCTATGGATATCAGATGGATTACATA 1074
Query 1040 G----A-GA----T-TGTAAGCTTGTAGAAACAGATGATTCCTTCCACAAAATAGGAATA 1089
| | || | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1075 GACAAATGATTTTTCTGTAAGCTTGTAAAAACAGATGATTCCTTCCACAAAATAGGAATA 1134
Query 1090 GTGATTAGATTTTTCTCTGTAATTTTATCGAATCTTCATACATATCAATGATAATATC 1147
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1135 GTGATTAGATTTTTCTCTGTAATTTTATCGAATCTTCATACATATCAATGATAACATC 1192
> AT5G63290.1 | Symbols: | Radical SAM superfamily protein | chr5:25369245-25370921
REVERSE LENGTH=1586
Length=1586
Score = 65.8 bits (35), Expect = 9e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 1110 AATTTTATCGAATCTTCATACATATCAATGATAATATC 1147
|||||||||||||||||||||||||||||||||| |||
Sbjct 1586 AATTTTATCGAATCTTCATACATATCAATGATAACATC 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5