BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496513
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63300.2 | Symbols: | Ribosomal protein S21 family protein ... 628 1e-179
> AT5G63300.2 | Symbols: | Ribosomal protein S21 family protein
| chr5:25371122-25371775 FORWARD LENGTH=654
Length=654
Score = 628 bits (340), Expect = 1e-179
Identities = 394/419 (94%), Gaps = 7/419 (2%)
Strand=Plus/Plus
Query 8 ATGGCGCTAGAATCGATAGTTTCTCTCTCGGAGCTTCTCTCTTCCCTTCTCTCGTCGAAA 67
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCTAGAATCGATAGTCTCTCTCTCGGAGCTTCTCTCTTCCCTTCTCTCGTCGAAA 60
Query 68 CCGCCGTCTCCGTCGAGTCTGAAACCTATCACGCTTCCGTCTTCCGTATCCGCGAGATCA 127
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CCACCGTCTCCGTCGAGTCTGAAACCTATCACGCTTCCGTCTTCCGTATCCGCGAGAACG 120
Query 128 TCACAGCATTTGTCGATGACGA--A-GATTTTAACGGCTGAGCACGATGACGTCACCAAT 184
|||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||
Sbjct 121 TCACAGCATTTGTCGATGACGACGAAGATTTTAACGGCCGAGCACGATGACGTCATCAAT 180
Query 185 CGAGTGGCTTATCCTTCGCTGGCGAACGCGAACCTCGTCTTCTTCAAGTCCGGTTATTAC 244
|||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||| |||
Sbjct 181 CGAGTGGCGTATCCTTCGCTGGCGAACGCGAATCTCGTATTCTTCAAGTCCAGTTACTAC 240
Query 245 AACGTCGAAGTGGTGCCTAAAGACGGCGAATCGGAGGAGCAGCTG-TTGAACGATTTCAA 303
|||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 241 AACGTCGAGGTGGTGCCTAAAGACGGCGAATCGGAGGAGCAGCTGGTT-AACGATTTCAA 299
Query 304 GAGGTCGTGTTTCAGAGCCGGTGTGTTGCAGGAATCTCGAAGACGACGATTCTTCGAGAG 363
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GAGGTCGTGTTTCAGAGCGGGTGTGTTGCAGGAATCTCGAAGACGACGCTTCTTCGAGAG 359
Query 364 CTCTCAGGAGAA-AAGGATACGGAAGACCAAAGAAGCTGCTAAGAAGTATCGGAAAAGG 421
||||| |||||| ||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct 360 CTCTCTGGAGAAGAAG-ACGCGGAAGACCAAAGAAGCTGCGAAGAAGTATCGGAAAAGG 417
Score = 226 bits (122), Expect = 2e-58
Identities = 148/160 (93%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 419 AGGAGACCAAACCCTAAACCAAAGCCGCAAACAACTTCAGAGATCCGCAAG---AGCAGA 475
||||||||||||||||||||||| || | | |||||||||||||||||||| | ||||
Sbjct 495 AGGAGACCAAACCCTAAACCAAAACCACTATCAACTTCAGAGATCCGCAAGCACAACAGA 554
Query 476 AATGTATCCAGAGAAGACGAAGAAGACGATCACTGGGAACTTCCTCCTGAGGACATTGAG 535
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 555 AATGCATCCAGAGAAGACGAACAAGACGATCACTGGGAACTTCCTCCTGAGGACATTGAG 614
Query 536 ATTCCGTATACAAACCGGTCTTAGAAGTAAACCGGAATGA 575
||||| ||||| ||||||||||||||||||||||||||||
Sbjct 615 ATTCCATATACCAACCGGTCTTAGAAGTAAACCGGAATGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32903366285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5