BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496513 Length=680 Score E Sequences producing significant alignments: (Bits) Value AT5G63300.2 | Symbols: | Ribosomal protein S21 family protein ... 628 1e-179 > AT5G63300.2 | Symbols: | Ribosomal protein S21 family protein | chr5:25371122-25371775 FORWARD LENGTH=654 Length=654 Score = 628 bits (340), Expect = 1e-179 Identities = 394/419 (94%), Gaps = 7/419 (2%) Strand=Plus/Plus Query 8 ATGGCGCTAGAATCGATAGTTTCTCTCTCGGAGCTTCTCTCTTCCCTTCTCTCGTCGAAA 67 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGCTAGAATCGATAGTCTCTCTCTCGGAGCTTCTCTCTTCCCTTCTCTCGTCGAAA 60 Query 68 CCGCCGTCTCCGTCGAGTCTGAAACCTATCACGCTTCCGTCTTCCGTATCCGCGAGATCA 127 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 CCACCGTCTCCGTCGAGTCTGAAACCTATCACGCTTCCGTCTTCCGTATCCGCGAGAACG 120 Query 128 TCACAGCATTTGTCGATGACGA--A-GATTTTAACGGCTGAGCACGATGACGTCACCAAT 184 |||||||||||||||||||||| | |||||||||||| |||||||||||||||| |||| Sbjct 121 TCACAGCATTTGTCGATGACGACGAAGATTTTAACGGCCGAGCACGATGACGTCATCAAT 180 Query 185 CGAGTGGCTTATCCTTCGCTGGCGAACGCGAACCTCGTCTTCTTCAAGTCCGGTTATTAC 244 |||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||| ||| Sbjct 181 CGAGTGGCGTATCCTTCGCTGGCGAACGCGAATCTCGTATTCTTCAAGTCCAGTTACTAC 240 Query 245 AACGTCGAAGTGGTGCCTAAAGACGGCGAATCGGAGGAGCAGCTG-TTGAACGATTTCAA 303 |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 241 AACGTCGAGGTGGTGCCTAAAGACGGCGAATCGGAGGAGCAGCTGGTT-AACGATTTCAA 299 Query 304 GAGGTCGTGTTTCAGAGCCGGTGTGTTGCAGGAATCTCGAAGACGACGATTCTTCGAGAG 363 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 GAGGTCGTGTTTCAGAGCGGGTGTGTTGCAGGAATCTCGAAGACGACGCTTCTTCGAGAG 359 Query 364 CTCTCAGGAGAA-AAGGATACGGAAGACCAAAGAAGCTGCTAAGAAGTATCGGAAAAGG 421 ||||| |||||| ||| | |||||||||||||||||||| |||||||||||||||||| Sbjct 360 CTCTCTGGAGAAGAAG-ACGCGGAAGACCAAAGAAGCTGCGAAGAAGTATCGGAAAAGG 417 Score = 226 bits (122), Expect = 2e-58 Identities = 148/160 (93%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 419 AGGAGACCAAACCCTAAACCAAAGCCGCAAACAACTTCAGAGATCCGCAAG---AGCAGA 475 ||||||||||||||||||||||| || | | |||||||||||||||||||| | |||| Sbjct 495 AGGAGACCAAACCCTAAACCAAAACCACTATCAACTTCAGAGATCCGCAAGCACAACAGA 554 Query 476 AATGTATCCAGAGAAGACGAAGAAGACGATCACTGGGAACTTCCTCCTGAGGACATTGAG 535 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 555 AATGCATCCAGAGAAGACGAACAAGACGATCACTGGGAACTTCCTCCTGAGGACATTGAG 614 Query 536 ATTCCGTATACAAACCGGTCTTAGAAGTAAACCGGAATGA 575 ||||| ||||| |||||||||||||||||||||||||||| Sbjct 615 ATTCCATATACCAACCGGTCTTAGAAGTAAACCGGAATGA 654 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32903366285 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5