BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496515
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63310.1 | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATND... 1099 0.0
> AT5G63310.1 | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2
| nucleoside diphosphate kinase 2 | chr5:25371904-25373861
REVERSE LENGTH=937
Length=937
Score = 1099 bits (595), Expect = 0.0
Identities = 690/735 (94%), Gaps = 9/735 (1%)
Strand=Plus/Plus
Query 1 GAAGCTAAGACAAAGCGCAGAAAATGGTGGGAGCGACTGTGGTTAGTAAATGGACT---C 57
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1 GAAGCTAAGACAAAGCGCAGAAAATGGTGGGAGCGACTGTAGTTAGTAAATGGACTCCCC 60
Query 58 TCTGTGTTACTTCGCCGTCGGTA-AGAAACTCGACAAGTCTCAATCCACACTGCTCTCCG 116
| ||||| |||||||| ||| | ||||||||| ||||||||||||||||||| |||||
Sbjct 61 TATGTGTGGCTTCGCCGCCGG-AGAGAAACTCGGCAAGTCTCAATCCACACTGTTCTCCA 119
Query 117 GCCAGTGTTAA-CCTACGCACAGAGTTGGCCGCATTTCGTCCTCAGTTCCGTCTCTTCTC 175
||||| ||||| || | |||| |||||||||||||||||||||||||||||| |||||
Sbjct 120 GCCAGGGTTAATTTTA-GAACAGCGTTGGCCGCATTTCGTCCTCAGTTCCGTCTTTTCTC 178
Query 176 GCCCGAA-TCATCGTCTCGCCGCCGTCTTCGCGCTTCCAGCTCCGCCGAATCGGGAATCT 234
| | || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCGC-AATTCCGCGTCTCGCCGCCGTCTTCGCGCTTCCAGCTCCGCCGAATCGGGAATCT 237
Query 235 TCCTCCCTCACCTTGTAGCTTCTATGGAGGAAGTTGAGGATACTTACATTATGGTGAAAC 294
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 238 TCCTTCCTCACCTTGTAGCTTCTATGGAGGACGTTGAGGAGACTTACATTATGGTGAAAC 297
Query 295 CTGATGGCATACAACGAGGCCTTGTAGGAGAAATCATCTCTCGCTTTGAGAAGAAGGGAT 354
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 298 CTGATGGCATACAACGAGGCCTTGTAGGAGAAATCATTTCTCGCTTTGAGAAAAAGGGGT 357
Query 355 TTAAACTTATTGGGCTCAAGATGTTTCAGTGCCCAAAAGAATTGGCTGAGGAGCATTACA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 358 TTAAACTTATTGGGCTCAAGATGTTTCAGTGCCCAAAAGAATTGGCTGAGGAGCATTATA 417
Query 415 AGGATCTTAGTGCTAAATCATTCTTTCCTAACCTGATTGAGTACATCACTTCAGGCCCAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 AGGATCTTAGTGCTAAATCATTCTTTCCTAACCTGATTGAGTACATCACTTCAGGTCCAG 477
Query 475 TTGTGTGTATGGCTTGGGAAGGTGTTGGCGTTGTTGCTTCAGCCAGGAAGCTAATAGGGA 534
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 478 TTGTGTGTATGGCTTGGGAAGGTGTTGGTGTTGTTGCTTCAGCCAGGAAGCTAATAGGGA 537
Query 535 AAACAGATCCTCTTCAAGCTGAACCTGGTACTATAAGAGGAGATCTTGCTGTGCAAACCG 594
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAACAGATCCGCTTCAAGCTGAACCTGGTACTATAAGAGGAGATCTTGCTGTGCAAACCG 597
Query 595 GAAGGAACATTGTGCACGGTAGTGATAGTCCTGAAAACGGCAAGCGTGAGATTGGTCTGT 654
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 598 GAAGGAACATTGTGCATGGTAGTGACAGCCCTGAAAACGGCAAGCGTGAGATTGGTCTGT 657
Query 655 GGTTCAAAGAAGGCGAGCTATGCGAGTGGGATTCGGCTCTGGCTACATGGCTAAGGGAGT 714
|||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 658 GGTTCAAAGAGGGCGAGCTATGCAAGTGGGATTCGGCTCTAGCTACATGGCTAAGGGAGT 717
Query 715 GATCATTGAGGAGAC 729
|||| ||||| ||||
Sbjct 718 GATCCTTGAGAAGAC 732
Score = 95.3 bits (51), Expect = 8e-19
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 730 TACTTGTTTTCTTGTTACTGATGATGAGCTTTGGTGTTTTGTTCCTGATTTTGG 783
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 756 TACTTGTTTTCTTGTTACCGATGATGAGCTTTGGTGTTTTGTTCCTGATTTTGG 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5