BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496518
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63320.1 | Symbols: NPX1 | nuclear protein X1 | chr5:2537441... 2132 0.0
AT5G63340.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 143 6e-33
> AT5G63320.1 | Symbols: NPX1 | nuclear protein X1 | chr5:25374413-25379246
REVERSE LENGTH=3649
Length=3649
Score = 2132 bits (1154), Expect = 0.0
Identities = 1344/1431 (94%), Gaps = 31/1431 (2%)
Strand=Plus/Plus
Query 241 AAACGATGGGCAAAGCGCGGAAACACTCTAGAGGGAGATCATCAGGCTTTGTTCCTGATT 300
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 459 AAACGATGGGTAAAGCGCGGAAACACTCTAGAGGGAGACCATCAGGCTTTGTTCCTGATT 518
Query 301 ACATGCAAGCTGTTGAGACCATTGAGCCTGATGAATTTGTTTACTCAGGGAGGATTGATT 360
|||||||||| | | ||||||||||||||||||||||||| | || ||
Sbjct 519 ACATGCAAGC---T--G----TTGAGCCTGATGAATTTGTTTACTC----A-GA--GA-- 560
Query 361 CTGTGATGAAACATTCTGAGGCCTCTCCTCCATTGAAAAGGAGACGTTTTGGTTTGAATG 420
| |||| | |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 561 --G-GATG--A-ATTCTGAGGCGTCTCCTCCACTGAAAAGGAGACGTTTTGGTTTGAATG 614
Query 421 GAGATAGCAATGGCGTTTCTAAAGAGGTTTTGTCGT-TGTCAAAGATGTCGAGGTCTGAG 479
|||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 615 GAGATAACAATGGCGTTTCTAAAGAGGTTTTGTC-TCTGTCAAAGATGTCGAGGTCTGAG 673
Query 480 AGAAAAAATTTAGTTCACAAGTTGAAGATGGAGCTTCAACAGGTCAGGGACCTTAGTAAG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AGAAAGAATTTAGTTCACAAGTTGAAGATGGAGCTTCAACAGGTCAGGGACCTTAGTAAG 733
Query 540 AAGATTGCATCTTTCAGTTCAGATGCTGTTCTGTTGTCGCCATACAATGATATTCATAGC 599
||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 734 AAGATTGCATCTTTCAGTTCAGACACTGTTCTGTTGTCGCCATACAATG--A-TCATAGC 790
Query 600 TGCAGTGATGGGCCTAGGAGGCCGCCACCAGAAAACTTTGCTAAATTTGTTGGGTCACAG 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 791 TGCAGTGATGGGCCTAGGAGGCCGCCACCAGAAAACTTTGCTACATTTGTTGGGTCACAG 850
Query 660 GGCAAAAAGCGTCCTCCTGTGCGCAATGATAAGCACCGGACTAAGAAAGGTCCATCTCGA 719
||||||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 851 GGCAAAAAGCGCCCTCCTGTGCGCAGTGATAAGCAGCGGAATAAGAAAGGTCCATCTCGA 910
Query 720 TTAAATGTCCCAACAAGTTCTACTGTTGCTTCAGTGATGAAGGAGTGTGAGACGTTACTC 779
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TTAAATGTCCCAACAAGTTATACTGTTGCTTCAGTGATGAAGGAGTGTGAGACGTTACTC 970
Query 780 AATCGTCTGTGGTCACATAAGTTGGGGTGGGCATTTCGTACTCCAGTTGATCCAGTGATG 839
|||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 971 AATCGTTTATGGTCACATAAGTCGGGGTGGCCATTTCGTACTCCAGTTGATCCAGTGATG 1030
Query 840 TTGAATATACCAGACTATTTTACTGTGATTAAGCACCCAATGGATCTTGGAACGATACGA 899
|||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 1031 TTGAATATTCCAGACTATTTTAATGTGATTAAACATCCAATGGATCTTGGAACGATACGA 1090
Query 900 AGCAGGCTGCGTAAAGGTGAATACTCTAGTCCTTTGGACTTCGCAGCAGATGTGCGTCTT 959
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1091 AGCAGGCTGTGTAAAGGTGAATACTCTAGTCCTTTGGACTTTGCAGCAGATGTGCGTCTT 1150
Query 960 ACATTTTCAAATTCTATAGCTTACAATCCACCAGGAAATCAGTTCCATACTATGGCTCAA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 ACATTTTCAAATTCTATAGCTTACAATCCACCAGGAAATCAGTTCCATACTATGGCTCAG 1210
Query 1020 GGTATCAGTAAATATTTTGAATCGGGATGGAAAAGTATAGAGaaaaaaaTACCTGTGACT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1211 GGTATCAGTAAATATTTTGAATCGGGATGGAAAAGTATAGAGAAAAAAATACCTATGTCT 1270
Query 1080 AAACCACCAGTCATTCCCCTAACCAGTTCTGCTTCTCTGGAGTCTGAAATTCCTTTTGAA 1139
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1271 AAACCACCAGTTATTCCCCTAACCAGTTCTGCTTCTCTGGAGTCTGAAATCCCTTTCGAA 1330
Query 1140 GTAGCACCGTTGAGAAATAAATCAGCTGCAATGAACGAGAGCAAGCTGAGGGTGGAACCT 1199
||||||||| ||||||| || ||||||||||||||| | |||||||||||||||||||
Sbjct 1331 GTAGCACCGATGAGAAAGAAGGAAGCTGCAATGAACGATAACAAGCTGAGGGTGGAACCT 1390
Query 1200 CCTAAGTTGGTCATGACAGATGATGAGAAGAAAAAATTAAGCCAGGATCTGGTGGCGTTA 1259
||||||||||||||||||||| |||||||||||||||| |||| |||||| |||| |||
Sbjct 1391 GCTAAGTTGGTCATGACAGATGGTGAGAAGAAAAAATTAGGCCAAGATCTGATGGCATTA 1450
Query 1260 GAAGAAGAGTTCCCACAAAACATTAG-TGATTTCCTGAGAGAGCAAAGTGGCAGTGATGG 1318
|||||||| ||||| ||||| ||| | |||| ||||||||||||||||||||||||||||
Sbjct 1451 GAAGAAGATTTCCCTCAAAAGATT-GCTGATCTCCTGAGAGAGCAAAGTGGCAGTGATGG 1509
Query 1319 TCAATCTGGAGAAGTTGAGATTGAGATAGATATAGAAACGCTTTCTGATGAAATCTTGTT 1378
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1510 TCAATCTGGAGAAGGTGAGATTGAGATAGATATAGAAGCGCTTTCTGATGAAATCTTGTT 1569
Query 1379 CATGGTTCGGAAACTCCTGGATGACTATTTAAGGGAGAAAAAGAAATCCCTGGAAAAGAG 1438
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1570 CATGGTTCGGAAACTCCTGGATGACTATTTAAGGGAGAAAAAGAAATCCATGGAAAAGAG 1629
Query 1439 CGAACCTTGTGAGATGGAGATTGTTCATGACTCTGGATTCAGTAATTCCCCTCTGCAGGC 1498
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1630 CGAACCTTGTGAGATGGAGATTGTTCATGACTCTGGATTCAGTAATTCCCCTTTGCAGCC 1689
Query 1499 TAGTAAAGGAGATCTGCAAATTGACGAGGATGTTGACATAGTTGGTGGGAATGACCCTTC 1558
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1690 TAGTAAAGGTGATCTGCAAATTGACGAGGATGTTGACATAGTTGGTGGGAATGACCCCTC 1749
Query 1559 GGTCTCAAGCCATCCTCCTCTTAAGATAGAAAAAGATGCTGCATGTAGAAATAATGAAAG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 GGTCTCAAGCCATCCTCCTCTTAAGATAGAAAAAGATGCTGCATGTAGAAATAATGAAAG 1809
Query 1619 CAGCAGTTCGAGTAGCTCTAGTAGTGAATCAGGGTCTTCATCTAGTGGTTC 1669
||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1810 CAGCAGTTCGAGTAGCTCTAGTAGTGAATCAGGCTCTTCATCTAGTGATTC 1860
Score = 257 bits (139), Expect = 2e-67
Identities = 179/197 (91%), Gaps = 7/197 (4%)
Strand=Plus/Plus
Query 51 GATCTAGGGTTTTCCCAAATCGATTTTGGTA-ttttttttttACTCAGTCGAGGGTTTTT 109
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 4 GATCTAGGGTTTT-CCAAATCGATTTTGGTACCTTTTTTTTGACTCAGTCGAGGGTTTTT 62
Query 110 CTAGGGTTTCGATTTAGCTTTTTCCCCAATTGCCGTTGAGGAAGACAATCTCCTCGGTGA 169
|||||||||||||| |||||||| |||||||||||||||||||| | | || |||||||
Sbjct 63 CTAGGGTTTCGATT-AGCTTTTTTGCCAATTGCCGTTGAGGAAGATACT-TCTTCGGTGA 120
Query 170 ATTTGATTTTGATTTTGACCTGAGGGAGAAGGAAGAAGCTTAGACCAATTCG-ATTCTCA 228
||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 121 ATTTGATTT-GATTTTGACCTGAGGGAGAAGCAAGAAGCTTAGACCAATTGGGATTCTCA 179
Query 229 ATTTTGGTAAGTAAACG 245
||| ||||||| ||||
Sbjct 180 GTTT-GGTAAGTCAACG 195
> AT5G63340.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:25378894-25379674 FORWARD LENGTH=519
Length=519
Score = 143 bits (77), Expect = 6e-33
Identities = 97/106 (92%), Gaps = 3/106 (3%)
Strand=Plus/Minus
Query 83 tttttttttACTCAGTCGAGGGTTTTTCTAGGGTTTCGATTTAGCTTTTTCCCCAATTGC 142
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 262 TTTTTTTTGACTCAGTCGAGGGTTTTTCTAGGGTTTCGATT-AGCTTTTTTGCCAATTGC 204
Query 143 CGTTGAGGAAGACAATCTCCTCGGTGAATTTGATTTTGATTTTGAC 188
|||||||||||| | | || |||||||||||||||| |||||||||
Sbjct 203 CGTTGAGGAAGATACT-TCTTCGGTGAATTTGATTT-GATTTTGAC 160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88252558110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5