BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496519
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63350.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1421 0.0
AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 110 4e-23
> AT5G63350.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G48510.1);
Has 103 Blast hits to 102 proteins in 13 species: Archae -
0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:25380000-25381183
REVERSE LENGTH=1184
Length=1184
Score = 1421 bits (769), Expect = 0.0
Identities = 913/982 (93%), Gaps = 12/982 (1%)
Strand=Plus/Plus
Query 36 ATGGACGGTAGTGGAGGCTGTTGCATAGCCAGATATGGCGTTTACGGTGGTCGTTATGGT 95
||||||||||| ||||| |||||||||||||||||||| | |||||||||||| || |||
Sbjct 60 ATGGACGGTAGGGGAGGTTGTTGCATAGCCAGATATGGTGGTTACGGTGGTCGCTACGGT 119
Query 96 CTCTCCAAAGCTGATCGAATCATGCTTCGATTCCGTCCCATTGCTCCTAAACCAGCCAGC 155
||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 120 CTCTCCAAAGCAGATCGAATCATGCTTCGTTTTCGTCCCATTGCTCCTAAACCGGCCAGC 179
Query 156 GACGGCGGCGGAAGTGTCTCTCCCGTCACCGGAAAGTA-CGGCTCCCCCACAACTACAAG 214
|| ||| |||||||||||| | ||||||| ||| | ||||||| |||||||||||||
Sbjct 180 GA---CGGTGGAAGTGTCTCT--C-TCACCGGGAAG-AGCGGCTCCACCACAACTACAAG 232
Query 215 CGGTGGAAGCTCCGATGTTTCCGGTAAATCTGGGAGAGGAAAGAGGAAGTACCAGAGAGA 274
||||||||||||||| | || ||||||||||||||||||||||| ||||| || | |||
Sbjct 233 TGGTGGAAGCTCCGATCTCTCAGGTAAATCTGGGAGAGGAAAGAGAAAGTATCAAAAAGA 292
Query 275 TAGTTCCGGCGGTAACTCCCGAAGGTGCAATAAGAAGAAGAGAGATCTCAGTGGAGATGC 334
| ||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 293 TTGTTCCGGTGGGAACTCCCGAAGGTGCAATAAGAAGAAGAGAGATCTAAGTGGAGACAC 352
Query 335 TGCTACTACCACGGCGGTTACATTGTCTCTTTTACCAGAGACGCCTGATAAAGC-AGTTT 393
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 353 TGCTACTACCACGGCGGTTACATTGTCTCTTTTACCAGAGACGCCTGAGAAA-CGAGTTT 411
Query 394 TTCCAGATCTGAATGCTTTTCCGGTAGAGAAACAGAAGCGAAACGGTCCTTTATGGCTGA 453
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 412 TTCCAGATCTGAATGCTTTTCCGGTGGAGAAGCAGAAGCGAAACGGTCCTTTATGGCTGA 471
Query 454 GTTTCAACGGCGGTAGTGAGATGTTAACGCCGTACAATTCGGCGGAGATATGTCGAAGGA 513
|||||||||||||| ||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 472 GTTTCAACGGCGGTGGTGAGATTTTAACGCCGTACAAAACGGCGGAGATATCACGAAGGA 531
Query 514 CGGTGGTTGTTTCGTCGTGTGTGACGGTTGAACGTGTGACTGACGCATGGATCGACGGTT 573
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 532 CGGTGGTGGTTTCGTCGTGTGTGACGGTTGAGCGTGTGACTGACGCTTGGATCGACGGTT 591
Query 574 ATGGATTAGGGAAGACAAATGAGGAGAGGAAGATGAATCTTGTGAAAGACACGTGTCCTG 633
||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 592 ATGGATTAGGGGAGACAAATCAGGAGAGGAAGATGAATCTAGTGGAAGACACGTGTCCTG 651
Query 634 GTTTTATATCGGACGGTGCAGGGAGAGTCACGTGGACCAATGAGGCGTATAAGAAGATGG 693
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GTTTTATATCGGACGGTGTAGGGAGAGTCACGTGGACCAATGAGGCGTATAAGAAGATGG 711
Query 694 CTAGAGAAGATATTAATATTCCGATGGAGGAAGGTGTACCGGAGGAGATGAATTACGATA 753
|||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 712 CTAGAGAAGATATTAATATTCCGATGGAGGAAGGTGTACCGGAGGATATTAGTTACGATA 771
Query 754 ATTTTCACGTGATCGTACGGTTAGTGATGAAGGAGAGGCCGATGCTAACGTACCCAGCTT 813
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ATTTTCACGTGAACGTACGGTTAGTGATGAAGGAGAGGCCGATGCTAACGTACCCAGCTT 831
Query 814 TTACATGCAGAGTGAGATTACAGTACACGTGTCAAGATCGAGAAAGAGGTTCCGTCACGG 873
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 832 TCACATGCAGAGTGAGATTACAGTACACGTGTCAAGATCGAGAAAGAGGATCCGTCACGG 891
Query 874 TGCCTTGTGACGTGTGGAGAATGGACGGCGGTGGTTTTGCGTGGAGACTTGACGTTAAGG 933
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 892 TGCCTTGTGACGTGTGGAGAATGGACGGCGGTGGTTTTGCGTGGAGGCTTGACGTTAAGG 951
Query 934 CAGCTTTGTG-CTTGTGACGTTCTTTCAATCTCCGCCATTGGATTCACAATGGTGAAAAT 992
|||||||||| || |||||||||||||| || || || ||||||| ||||||||||||||
Sbjct 952 CAGCTTTGTGTCT-GTGACGTTCTTTCATTCGCCACCGTTGGATTTACAATGGTGAAAAT 1010
Query 993 GATGAACGGTCCCGATCGTATC 1014
|||||| |||||||||||||||
Sbjct 1011 GATGAATGGTCCCGATCGTATC 1032
> AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G48510.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:20505180-20506338 REVERSE LENGTH=1159
Length=1159
Score = 110 bits (59), Expect = 4e-23
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 594 GAGGAGAGGAAGATGAATCTTGTGAAAGACACGTGTCCTGGTTTTATATCGGACGGTGCA 653
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct 580 GAGGAGAGGAAGATGAATCTTGAGAGAGACACGTGTCCTGGTTTTATATCGGACGGTTTA 639
Query 654 GGGAGAGTCACGTGGAC 670
|||||||||| |||||
Sbjct 640 GGGAGAGTCATTTGGAC 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5