BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496525
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63400.1 | Symbols: ADK1 | adenylate kinase 1 | chr5:2539300... 1688 0.0
> AT5G63400.1 | Symbols: ADK1 | adenylate kinase 1 | chr5:25393001-25394907
REVERSE LENGTH=1104
Length=1104
Score = 1688 bits (914), Expect = 0.0
Identities = 978/1009 (97%), Gaps = 3/1009 (0%)
Strand=Plus/Plus
Query 1 CGAGAAAAACGAAGATTTCTGAGCGAAACTAGATCAGCTATGGCGACCGGTGGTGCTGCG 60
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 52 CGAGAAAAACGAAGTTTTCTGAGCTAAACTAGATCAGCTATGGCGACCGGTGGTGCTGCG 111
Query 61 GCGGATTTGGAAGATGTTCAGACGGTGGATCTCATGTCGGAGCTCCTCCGCCGCCTCAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 GCGGATTTGGAAGATGTTCAGACGGTGGATCTCATGTCGGAGCTCCTCCGCCGCCTCAAG 171
Query 121 TGTTCTCAGAAGCCCGACAAACGCCTCATCTTCATTGGACCTCCAGGGTCAGGGAAAGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TGTTCTCAGAAGCCCGACAAACGCCTCATCTTCATTGGACCTCCAGGGTCAGGGAAAGGT 231
Query 181 ACACAATCTCCAGTAGTGAAGGATGAGTATTGCTTGTGTCACTTATCCACTGGAGACATG 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ACTCAATCTCCAGTAGTGAAGGATGAGTATTGCTTGTGTCACTTATCCACTGGAGACATG 291
Query 241 TTAAGAGCTGCTGTTGCTTCTAAAACCCCTCTTGGTGTGAAGGCTAAAGAAGCTATGGAA 300
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 292 TTAAGAGCTGCTGTTGCTTCTAAGACCCCTCTTGGTGTCAAGGCTAAAGAAGCTATGGAA 351
Query 301 AAAGGAGAGCTTGTCTCTGATGATTTGGTTGTTGGTATAATTGATGAAGCCATGAACAAG 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AAAGGAGAGCTCGTCTCTGATGATTTGGTTGTTGGTATAATTGATGAAGCCATGAACAAG 411
Query 361 CCAAAATGTCAAAAAGGATTCATCCTTGATGGGTTCCCCAGGACTGTTACTCAGGCAGAG 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 412 CCAAAATGTCAAAAAGGATTTATCCTTGATGGGTTCCCCAGGACTGTTACTCAGGCAGAG 471
Query 421 AAGCTCGATGAGATGCTTAAGAGGCGAGGAACTGAAATCGACAAAGTTCTCAACTTTGCT 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 472 AAGCTCGATGAGATGCTTAAGAGGCGAGGAACTGAAATTGACAAAGTTCTCAACTTTGCT 531
Query 481 ATTGATGACTCAATCTTGGAGGAAAGAATAACTGGGCGATGGATCCACCCATCAAGTGGC 540
||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 532 ATTGATGACGCAATCTTGGAGGAAAGAATAACCGGGCGATGGATCCACCCATCGAGTGGC 591
Query 541 AGGAGTTACCACACCAAATTTGCGCCTCCCAAAACCCCTGGGGTTGATGATATTACCGGA 600
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 592 AGGAGTTACCACACCAAATTTGCTCCTCCCAAAACCCCTGGAGTTGATGATATTACTGGA 651
Query 601 GAGCCTCTGATCCAACGCAAAGATGATAACGCTGACGTTCTAAGGTCGAGGCTTGCAGCT 660
||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 652 GAGCCTCTGATCCAACGTAAAGATGATAACGCTGATGTTCTAAAGTCGAGGCTTGCAGCT 711
Query 661 TTCCACAGTCAAACTGAACCGGTGATTGATTACTACGCAAAGAAGGCCGTTCTCACAAAC 720
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTCCACAGTCAAACTCAACCGGTGATTGATTACTACGCAAAGAAGGCCGTTCTCACAAAC 771
Query 721 ATCCATGCCGAGAAGGCTCCCCAAGAAGTTACATCAGAGGTTAAAAAAGCATTGTCATGA 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ATCCAGGCCGAGAAGGCTCCCCAAGAAGTTACATCAGAGGTTAAAAAAGCATTGTCATGA 831
Query 781 TCAAAGACTCCTCAAGCAAATCATCTCCTCTGGTTAGAATCCATTCTTTTCCTTACTACA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TCAAAGACTCCTCAAGCAAATCATCTCCTCTGGTTAGAATCCATTCTTTTCCTTACTACA 891
Query 841 AGAGAGAGACACATCTATATA-TCCACTCATCTGCGGAATGACAGTTTTTTCTTTTAGTC 899
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGAGAGAGACACATCTATATAATCCACTCATCTGCGGAATGACAGTTTTTTCTTTTAGTC 951
Query 900 CTTGCGCTTTACCTT-TTCGACTAATATTCAAAATCTGGAGAAGAATTTTTTACTCCTGG 958
|||||||||| |||| ||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 952 CTTGCGCTTTTCCTTCTTCGACTAATATTCAAAATATGGAGAAGAGTTTTT-ACTCCTGA 1010
Query 959 ATATTATCTATTGTCGCAGTCTTTTTACAAAATAAGTAATTTGTCTCAT 1007
|||||||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct 1011 ATATTATCTACTGTCGCAGTCTCTTTACCAAATAAGTAACTTGTCTCAT 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5