BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496527
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63410.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3729 0.0
> AT5G63410.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:25394984-25398153 REVERSE LENGTH=2492
Length=2492
Score = 3729 bits (2019), Expect = 0.0
Identities = 2229/2332 (96%), Gaps = 8/2332 (0%)
Strand=Plus/Plus
Query 1 ACCTATTCTCACTAACAAACTCTGAACAAACCaaaaaaaa-aC-TCTTTTTCCTCTCTTT 58
|||||||||||||||||||||||||||||||||||||||| | ||||||| || |||||
Sbjct 1 ACCTATTCTCACTAACAAACTCTGAACAAACCAAAAAAAACTCTTCTTTTTTCTATCTTT 60
Query 59 CACGCGTTGAAGATTCTTGCTTTTCTTTC-T-T-C-TCCTTACACGGCCACTGATATGTG 114
||||||||||||||||||| ||||||||| | | | |||||||||| |||||||||||||
Sbjct 61 CACGCGTTGAAGATTCTTGATTTTCTTTCTTCTCCTTCCTTACACGACCACTGATATGTG 120
Query 115 TCGGTGACTGAAAGAATCTGCTCTCTTTTGCCTCTGATTTATCGATATGTTTTAAAGAAA 174
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGTGACTGAAACCATCTGTTCTCTTTTGCCTCTGATTTATCGATATGTTTTAAAGAAA 180
Query 175 AA-AGTGTTTGCAACTTTTGAAATTTGCAGGTCCATCAAATACTCAGATCTTGTCTGAGA 233
|| ||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 181 AACGGTGTTTGAAACTTTTGTAATTT-AAGGTTCATCAAATACTCAGATCTTGTCTGAGA 239
Query 234 AATCAAGTTGAAATCTGATAAATGGGTTTCTTCAAATACATCTTCTTGTTATCTCTTCTA 293
||| ||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 240 AATTAAGCTGAAATCTGATAAATGGGTTTGTTTAAATTCATCTTCTTGTTATCTCTTCTA 299
Query 294 TGGAGTTTCTACAGTTTAGGCTCGTCTCAGCTACAAGCTTCACAAGCACAGGTTCTTCTT 353
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 300 TGGAGTTTCTACAGTTTAGGCTCATCTCAGCTACAAGCTTCACAAGCACAAGTTCTTCTT 359
Query 354 CAGCTGAAAAAACACTTAGAATACCCACAACAGCTAGAATCTTGGTATGATCACAGGACC 413
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 360 CAGCTGAAAAAACACTTAGAATATCCACAACAGCTAGAATCTTGGTATGATCACAGAACC 419
Query 414 AATTTCTGCTATTTACAAGCAACACCATCGATGAACATCACTTGTTTCTCTAATTCAGTC 473
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AATTTCTGCTACTTACAAGCAACACCATCGATGAACATCACTTGTTTCTCTAATTCAGTC 479
Query 474 TCAGAGCTAAACATCTTCGGTGATAAATCATCGGAAAAGGCCAAAAGCTTTGAGGGTTTT 533
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 480 TCAGAGCTAAACATCTTCGGTGATAAGTCATCAGAAAAAGCCAAAAGCTTTGATGGTTTT 539
Query 534 GCTATCTCTAATGTTACTTTATCTGATAGATTCTCTATTGAATCATTTTTCACTACACTC 593
||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||
Sbjct 540 GCTATCTCTAATGTTACTTTATCTGATGGATTCTCCATTGAATCATTTGTCACTACACTG 599
Query 594 TCAAGGCTAAAATCTCTTAGGGTTCTTACTCTGTCCTCTCTAGGGATTTGGGGTCATCTC 653
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 600 TCAAGGCTAAAATCTCTTAGGGTTCTTACTCTGGCTTCTCTAGGGATTTGGGGTCGTCTC 659
Query 654 CCTGAGAAGCTTCATCGTTTATCTTCACTTGAGTATTTGGATTTGAGCAATAACTTTCTG 713
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTGAGAAACTTCATCGTTTATCTTCACTTGAGTATTTGGATTTGAGCAATAACTTTCTG 719
Query 714 TTTGGATCAGTACCACCTAAGTTGTCTACAATGGTAAAGCTTGAAACTTTCAGATTTGAT 773
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTGGTTCAGTACCACCTAAGTTGTCTACAATGGTAAAGCTTGAAACTTTCAGATTTGAT 779
Query 774 CATAACTTCTTCAATGGCACATTACCTAGCTGGTTTGATTCGTATTGGTATCTCAAAGTT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CATAACTTCTTCAATGGCACATTACCTAGCTGGTTTGATTCGTATTGGTATCTCAAAGTT 839
Query 834 CTTAGCTTTAAGAGTAATAAGCTATCAGGAGAGCTACATTCTTCATTACTCTCGTTGTCG 893
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTAGCTTTAAAAGTAATAAGCTATCAGGAGAGCTACATTCTTCATTACTCTCGTTGTCA 899
Query 894 ACAATCGAGTATATCGATTTGAGGGCGAATTCTCTGAGTGGTTCACTTCCGGAGGATCTG 953
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 900 ACAATCGAGTATATCGATTTGAGAGCGAATTCTCTGAGTGGTTCACTTCCGGATGATCTG 959
Query 954 AAATGTGGAAGCAAACTCTGGTTTATAGACATTTCCGACAATAAGTTAACCGGAAAACTA 1013
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 960 AAATGTGGAAGCAAACTCTGGTTTATCGACATTTCCGACAATAAGTTAACCGGAAAACTT 1019
Query 1014 CCTCGTTGCTTAAGCAGCAAGCAAGATATTGCGTTGAGATTCAATGGAAACTGTTTATCT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCTCGTTGCTTAAGCAGCAAGCAAGATATTGCGTTGAGATTCAATGGAAACTGTTTATCT 1079
Query 1074 CTAGAGAAACAGCAACATCCAGAATCTTTTTGTGTTAAAGAAGCTCAAGCTGAGGCTAAA 1133
||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1080 CTAGAGAAACAGCAACATCCAGAATCTTTTTGTGTTAAAGAAGTTCGCGCTGCGGCTAAA 1139
Query 1134 GCTGAAGCAAAAGCAGAAGCAGAGGCTGCAAATGAATCAGGAAAAAGAAAATGGAAGAAA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GCTGAAGCAAAAGCAGAAGCAGAGGCTGCAAATGAATCAGGAAAAAGAAAATGGAAGAAA 1199
Query 1194 GGAGCTTTAATTGGTTTAATCGTTGGTATATCAATGGCGGTATTGGTTTTAATCTGCTGT 1253
||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1200 GGAGCTTTAATCGGCTTAATCGTTGGTATATCAATGTCGGTATTGGTTTTAGTCTGCTGT 1259
Query 1254 GTATTCATCTTGCTCAGAAGAAAAGGAGTAACAAAGAAGCATGTGCACCATAATACAGTC 1313
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1260 GTATTTATCTTGCTCAGAAGAAAAGGAGTAACAAAGAAGCATGTCCACCATAATACTGTC 1319
Query 1314 CAAGATAATCATCCATCAACTGGATTTTCCTCTGAGATACTCTCAAATGCAAGGTACATT 1373
||||||||||||||| | ||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1320 CAAGATAATCATCCAACTACTGGATTTTCTTCCGAGATACTCTCAAACGCAAGGTACATT 1379
Query 1374 TCTGAAACATCCAAGTTTGGTTCAGAGGATTTACCGGTATGTAGACAGTTTAGCTTAGAA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TCTGAAACATCCAAGTTTGGTTCAGAGGATTTACCGGTATGTAGACAGTTTAGCTTAGAA 1439
Query 1434 GAGATAGTTAAAGCTACAAAGAACTTCGATAAGACCATGATACTCGGTGAAAGCTCATTA 1493
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1440 GAGATAGTTAAAGCTACAAAGAACTTCGATAAGACTATGATACTCGGTGAAAGCTCCTTA 1499
Query 1494 TATGGCACGCTTTACAAAGGAAATCTTGATAATGGAACAAAAGTGGCTATAAGATGCTTA 1553
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1500 TATGGCACGCTTTACAAAGGAAATCTTGAGAATGGAACAAAAGTGGCAATAAGATGCTTA 1559
Query 1554 CCTTCATCGAAGAAATACTCAATAAGGAATCTAAAACTGCGGTTAGATTTGCTCGCAAAG 1613
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1560 CCTTCATCGAAGAAATACTCGATAAGGAATCTTAAACTGCGGTTGGATTTGCTCGCAAAG 1619
Query 1614 CTTAGACACCCGAATCTCGTTTGCTTGTTGGGTCATTGCATAGATTGTGGAGGAAAAGAT 1673
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CTTAGACACCCGAATCTTGTCTGCTTGTTGGGTCATTGCATAGATTGTGGAGGAAAAGAT 1679
Query 1674 GATTACAGCGTCGAAAAAGTCTTTTTGATTTATGAATACATTCCAAATGGAAACTTCCAA 1733
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1680 GATTACAGCGTTGAGAAAGTCTTTTTGATTTATGAGTACATTCCAAATGGAAACTTCCAA 1739
Query 1734 TCTTGTCTCTCAGATGATAGTTCAGGTAAGGCTATGAGTTGGTCAGAGAGGCTGAATGTT 1793
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 1740 TCTTGTCTCTCAGATAATAGTTCAGGTAAGGGTATGAATTGGTCAGAGAGGCTTAATGTT 1799
Query 1794 CTTACAGGTGTTGCAAAAGCTGTTCATTTTCTTCACACTGGAGTTATTCCTGGATTCTTC 1853
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 CTCACAGGTGTTGCAAAAGCTGTTCATTTTCTTCACACTGGAGTTATTCCTGGATTCTTC 1859
Query 1854 AGCAATAGACTCAAGACTAATAATGTCTTGCTTAACCAACACCGGTTTGCAAAGCTGAGT 1913
|||||||||||||||||||| || || |||||||||||||| |||||||| |||||||||
Sbjct 1860 AGCAATAGACTCAAGACTAACAACGTTTTGCTTAACCAACATCGGTTTGCGAAGCTGAGT 1919
Query 1914 GATTATGGTTTGTCCATTGTCTCTGAGGCAACCAGACATAACACAGAAATCGCAAAATCA 1973
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1920 GATTATGGTTTGTCCATTGTCTCTGAAGCAACCAGACATAACACAGAAATCGCAAAATCA 1979
Query 1974 TGGCAAATGTCAAGGCTAGAAGACGATGTTTACAGCTTCGGATTGATTCTTCTACAATCA 2033
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1980 TGGCAAATGTCAAGGCTAGAAGACGATGTTTACAGCTTTGGATTGATTCTTCTACAATCA 2039
Query 2034 ATCGTTGGACCATCTGTATCCGCAAGAGAAGAAGCATTTCTACGGGACGAACTGGCATCG 2093
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2040 ATCGTTGGACCATCTGTATCCGCAAGAGAAGAAGCATTTCTACGAGACGAACTGGCATCG 2099
Query 2094 TTGGAGAGCGAGGAAGGGAGAAGAAGAATGGTGAATCCGACAGTACAAGCCACTTGTCGG 2153
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2100 TTGGAGAGCGAAGAAGGGAGGAGAAGAATGGTGAATCCGACAGTACAAGCCACTTGTCGA 2159
Query 2154 AACGGATCATTGATAAGAGTGATAACTCTAATGAACAAATGTGTTTCGCCGGAATCTTTA 2213
||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 2160 AACGGATCACTGATAAGAGTGATAACTCTGATGAACAAATGTGTTTCACCTGAATCTTTA 2219
Query 2214 AGCCGACCATCCTTCGAAGATATCTTGTGGAATCTACAATATGCTTCTCAGTTGCAAGCT 2273
|||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 2220 AGCCGACCGTCCTTCGAAGATATCTTGTGGAATTTACAGTATGCTTCTCAGTTGCAAGCT 2279
Query 2274 GCTTCAGATGGTGACCAGTGTTAATATATTCATAGCTTCTTCTTCTTTTAGT 2325
||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2280 GCTTCTGATGGTGACCAGTGTTAATATATTCATAGCTTCTTCTTCTCTTAGT 2331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115411052955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5