BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496533
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 | ... 1256 0.0
AT3G48590.1 | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor ... 628 2e-179
AT1G54830.2 | Symbols: NF-YC3 | nuclear factor Y, subunit C3 | ... 182 7e-45
> AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4
| chr5:25415701-25417098 REVERSE LENGTH=1103
Length=1103
Score = 1256 bits (680), Expect = 0.0
Identities = 768/808 (95%), Gaps = 15/808 (2%)
Strand=Plus/Plus
Query 1 GCATAGATCCAATGGACAAT---aacaacaacaacaaccaaccaccaccaccaaccTCCG 57
||| |||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 4 GCAAAGATCCAATGGACAATAACAACAACAACAACAACCAGCAACCACCACCAACCTCCG 63
Query 58 TCTATCCACCTGGCTCCGCCGGCACAACCGTAATCCCTCCTCCTCCATCTGGATCTAG-A 116
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| | |
Sbjct 64 TCTATCCACCTGGCTCCGCCGTCACAACCGTAATCCCTCCTCCACCATCTGGATCT-GCA 122
Query 117 TCTATAGTGACCGGAGGAGGAGCGACGTACCACCACCTCCTCCAGCAACAACAACAACAG 176
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 123 TCAATAGTCACCGGAGGAGGAGCGACATACCACCACCTCCTCCAGCAACAACAGCAACAG 182
Query 177 CTTCAAATGTTCTGGAAATACCAGAGGCAAGAGATCGAACAGGTAAACGATTTCAAAAAC 236
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 183 CTTCAAATGTTCTGGACATACCAGAGACAAGAGATCGAACAGGTAAACGATTTCAAAAAC 242
Query 237 CATCAGCTTCCTCTAGCTCGGATCaaaaaaaTCATGAAAGCTGATGAAGATGTGCGTATG 296
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 243 CATCAGCTCCCTCTAGCTCGTATCAAAAAAATCATGAAAGCTGATGAAGATGTGCGTATG 302
Query 297 ATCTCCGCCGAAGCACCGATTCTCTTCGCCAAAGCTTGTGAGCTTTTCATTCTCGAGCTT 356
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 303 ATCTCCGCCGAAGCACCGATTCTCTTCGCGAAAGCTTGTGAGCTTTTCATTCTCGAACTT 362
Query 357 ACGATTAGATCTTGGCTTCACGCTGAAGAGAACAAACGTCGTACGCTTCAGAAAAACGAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ACGATTAGATCTTGGCTTCACGCTGAAGAGAACAAACGTCGTACGCTTCAGAAAAACGAT 422
Query 417 ATCGCTGCTGCGATTACTAGAACCGATATCTTCGATTTCCTTGTTGATATTGTTCCTAGG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATCGCTGCTGCGATTACTAGAACCGATATCTTCGATTTCCTTGTTGATATTGTTCCTAGG 482
Query 477 GAAGAGATCAAGGAAGAGGAAGATGCTGCGGCGGCGGCTCTTGGTGGAGGAGGTATGGTT 536
|||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 483 GAAGAGATCAAGGAAGAGGAAGATGCAGCATCGGC---TCTTGGTGGAGGAGGTATGGTT 539
Query 537 GCTCCCGCCGCGAGCGGTGTTCCTTATTATTATCCACCGATGGGACAACCGGCGGTTCCT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTCCCGCCGCGAGCGGTGTTCCTTATTATTATCCACCGATGGGACAACCGGCGGTTCCT 599
Query 597 GGAGGGATGATGATCGGAAGACCGGCGATGGATCCTAGCGGTGTTTATGCTCAGCCTCCT 656
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGAGGGATGATGATTGGAAGACCGGCGATGGATCCTAGCGGTGTTTATGCTCAGCCTCCT 659
Query 657 TCTCAGGCATGGCAAAGCGTTTGGCAGAATTCAGCTGGTGGTG---ATGACGTGTCATAT 713
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 660 TCTCAGGCATGGCAAAGCGTTTGGCAGAATTCAGCTGGTGGTGGTGATGATGTGTCTTAT 719
Query 714 GGAAGTGGAGGAAGTAGCGGCCATGGAAATCTCGATAGCCAAGGTTAAGTGAGCTATGGA 773
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 720 GGAAGTGGAGGAAGTAGCGGCCATGGTAATCTCGATAGCCAAGGTT--G--AGCTATGGA 775
Query 774 ACCAGAAGCTGAGAGGTTAAATCATCAT 801
|||||||||| |||| || |||||||||
Sbjct 776 ACCAGAAGCTTAGAGATTTAATCATCAT 803
Score = 78.7 bits (42), Expect = 9e-14
Identities = 52/56 (93%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 832 CTGTTAACTTATACTAAGTTATTGCAGCAAAACTGCAGACTTACTTAACTATATAT 887
|||||||| | || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 913 CTGTTAAC-T-TA-TAAGTTATTGCAGCAAAACTGCAGACTTGCTTAACTATATAT 965
> AT3G48590.1 | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor
Y, subunit C1 | chr3:18008657-18009982 REVERSE LENGTH=985
Length=985
Score = 628 bits (340), Expect = 2e-179
Identities = 578/689 (84%), Gaps = 31/689 (4%)
Strand=Plus/Plus
Query 85 CCGTAATCCCTCCTCCTCCATCTGGATCTA-GATCTATAG-TGACCGGAGGAGGAGCGAC 142
||| |||||||||||| ||| ||||| | | |||| | | | ||||||||||| |
Sbjct 82 CCGGAATCCCTCCTCCACCACCTGGAACCACCATCT-CCGCCG-CAGGAGGAGGAGCTTC 139
Query 143 GTACCACCACCTCCTCCAGCAACAACAACAACAGCTTCAAATGTTCTGGAAATACCAGA- 201
||||||||||| ||||| ||||||||||||||||| ||| | ||||||| ||||| |
Sbjct 140 TTACCACCACCTTCTCCAACAACAACAACAACAGCTCCAACTATTCTGGACCTACCA-AC 198
Query 202 GGCAAGAGATCGAACAGGTAAACGATTTCAAAAACCATCAGCTTCCTCTAGCTCGGATCa 261
| |||||||||||||| || |||||||||||||||||||||||||| |||||| |||| |
Sbjct 199 GCCAAGAGATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTAGGAT-A 257
Query 262 aaaaa-aTCATGAAAGCTGATGAAGATGTGCGTATGATCTCCGCCGAAGCACCGATTCTC 320
||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 258 AAAAAGATCATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTC 317
Query 321 TTCGCCAAAGCTTGTGAGCTTTTCATTCTCGAGCTTACGATTAGATCTTGGCTTCACGCT 380
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 318 TTCGCGAAAGCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCT 377
Query 381 GAAGAGAACAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGAACC 440
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 378 GAGGAGAATAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGGACT 437
Query 441 GATATCTTCGATTTCCTTGTTGATATTGTTCCTAGGGAAGAGATCAAGGAAGAGGAAG-A 499
||||||||||||||||||||||||||||||||||| || ||||| ||||| || | | |
Sbjct 438 GATATCTTCGATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAAGCCGCA 497
Query 500 TGCTGCGGCGGCGGCTCTTGGTGGAGGAGGTATGGTTGCTCCCGCCGCGAGCGGTGTTCC 559
| | | | ||| | |||||| ||| ||| ||||| |||||||||| || ||
Sbjct 498 -G-T-C--CT-CGG-T---GGTGGAAT-GGT--GGTGGCTCCTACCGCGAGCGGCGTGCC 544
Query 560 TTATTATTATCCACCGATGGGACAACCGGC-GGTTCCTGGAGGGATGATGATCGGAAGAC 618
||| |||||||| |||||||||||||| || ||| ||||||||||||||||| || ||||
Sbjct 545 TTACTATTATCCGCCGATGGGACAACCAGCTGGT-CCTGGAGGGATGATGATTGGGAGAC 603
Query 619 CGGCGATGGATCCTAGCGGTGTTTATGCTC-AGCCTCCTTCTCAGGCATGGCAAAGCGTT 677
| || |||||||| | |||||||||| || ||||||| |||||||| ||||| || |||
Sbjct 604 CAGCTATGGATCCGAATGGTGTTTATG-TCCAGCCTCCGTCTCAGGCGTGGCAGAGTGTT 662
Query 678 TGGCAGAATTC-AGCTGGT--GGT-GATGACGTGTCATATGGAAGTGGAGGAAGTAGCGG 733
||||||| ||| | | || || ||||| || || ||||| ||||| |||||| |||
Sbjct 663 TGGCAGACTTCGA-CGGGGACGGGAGATGATGTCTCTTATGGTAGTGGTGGAAGTTCCGG 721
Query 734 CCATGGAAATCTCGATAGCCAAGGTTAAG 762
|| || |||||||| ||||||||||||
Sbjct 722 TCAAGGGAATCTCGACGGCCAAGGTTAAG 750
> AT1G54830.2 | Symbols: NF-YC3 | nuclear factor Y, subunit C3
| chr1:20451609-20452671 FORWARD LENGTH=982
Length=982
Score = 182 bits (98), Expect = 7e-45
Identities = 209/261 (80%), Gaps = 14/261 (5%)
Strand=Plus/Plus
Query 225 GATTTCAAAAACCATCAG-CTTCC-TCTAGCTCGGATCaaaaaaaTCATGAAAGCTGATG 282
|||||||| |||||| || ||||| | | || | ||||| |||||||||||||||||||
Sbjct 256 GATTTCAAGAACCAT-AGCCTTCCAT-TGGCAAGAATCAAGAAAATCATGAAAGCTGATG 313
Query 283 AAGATGTGCGTATGATCTCCGCCGAAGCACC-GATTCTCTTCGCCAAAGCTTGTGAGCT- 340
||||||||||||||||||| ||||| || || | || | ||||||| || || ||| |
Sbjct 314 AAGATGTGCGTATGATCTCGGCCGAGGCGCCTG-TTGTGTTCGCCAGGGCCTGCGAGATG 372
Query 341 TTTCATTCTCGAGCTTACGATTA-GATCTTGGCTTCACGCTGAAGAGAACAA-ACGTCGT 398
||| ||||| ||||||||| ||| | |||||| || |||| |||||||| | | |
Sbjct 373 TTT-ATTCTGGAGCTTACG-TTAAGGTCTTGGAACCATACTGAGGAGAACAAGA-GAAGG 429
Query 399 ACGCTT-CAGAAAAACGATATCGCTGCTGCGATTACTAGAACCGATATCTTCGATTTCCT 457
||| || ||||| || |||||||| |||||| | |||||||| ||||| || ||||| ||
Sbjct 430 ACG-TTGCAGAAGAATGATATCGCGGCTGCGGTGACTAGAACTGATATTTTTGATTTTCT 488
Query 458 TGTTGATATTGTTCCTAGGGA 478
||| |||||||||||| ||||
Sbjct 489 TGTGGATATTGTTCCTCGGGA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5