BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496535
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63480.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1099 0.0
> AT5G63480.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25417265-25418635
FORWARD LENGTH=784
Length=784
Score = 1099 bits (595), Expect = 0.0
Identities = 695/743 (94%), Gaps = 7/743 (1%)
Strand=Plus/Plus
Query 1 CGTATTAATAGTTGAGT-AAACGACGCCGTGATAAGGCGTGTTCACTGTGCTGGAGAAGA 59
||||||||||||| ||| || |||||||||||||| | |||||||| ||| || | |||
Sbjct 3 CGTATTAATAGTTTAGTCAACCGACGCCGTGATAAAGTGTGTTCACGGTGATGCTGCAGA 62
Query 60 AACAGGTTTCGA--A-GACGACGATGACGACACAGGAGCTAGCGATGGAAGGAGAGAAGC 116
||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AACAGGTCTCGACGACGACGACGATGACGACACAGGAGCTAGCGATGGAAGGAGAGAAGC 122
Query 117 ATTTGGAAGAAACTATTGAAGCGGCGTTTCAGATAATTTCAGCCATGAATGATGAGCTTT 176
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AATTGGAAGAAACTATTGAAGCGGCGTTTCAGATAATTTCAGCCATGAATGATGAGCTTT 182
Query 177 GTAATCCTTCCTTATGGTCTACATCAGCTACCCCGAGTTCCGCCGCGACGGCGACGGGTT 236
||||||| || || |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 183 GTAATCCGTCTTTGTGGTCTACTTCAGCTACCCCGAGTTCCGCCGCGACGACGACGGGTT 242
Query 237 CTAATGGTTCGGCTCTCGTTTCTGTCGATGCGGCTGCGATTGATGGAACATCGCATCATT 296
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 243 CTAATGGTTCGGCTCTCGTTTCCGCCGATGCGGCTGCGATTGATGGAACATCGCATCATT 302
Query 297 CGGAATCTGGTGGTGGTGGTGGCGGCGGAGGAAGCGGGAATAGTGTTTTGGATGAGGCGA 356
||||||||| ||||||||| || ||||||||||| || ||||||||||||||||||||||
Sbjct 303 CGGAATCTGCTGGTGGTGGCGGGGGCGGAGGAAGTGGAAATAGTGTTTTGGATGAGGCGA 362
Query 357 GTCTTCGGTATAAGAACTCAGTGACTTCGCTTCGTGCTGTTCTTGCTGCGATTCCAAATT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GTCTTCGGTATAAGAACTCAGTGACTTCGCTTCGTGCTGTTCTTGCTGCGATTCCAAATT 422
Query 417 CGCACAAGGCAAAAGCATCTGAGACGGAAAATGGTTTAGGATCTCCTGAAAGTGAAGACG 476
|||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 423 CGCAGAAGGCAAAAGCATCTGAAATGCAAAATGGTTTAGGATCTCCTGAAAGTGAAGACG 482
Query 477 AAATCGAATTGTTGGAGGAGCAAGCCTTAAGTCTCAGAATGGAGATTGCAAAGAAGAATG 536
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AGATCGAAAAATTGGAGGAGCAAGCCTTAAGTCTCAGAATGGAGATTGCAAAGAAGAATG 542
Query 537 TTCATGTCAAAGAACTTATCGATAAACTTCGGGAACTTATAGCAGATATCTCTACATGGC 596
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TTCATGTTAAAGAACTTATAGATAAACTTCGGGAACTTATAGCAGATATCTCTACATGGC 602
Query 597 AAAGCCCTTGTTCTGTTTGAGTTTGAtttttttGACAATAGTGAGATCAGTTTAGACAAA 656
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 603 AAAGCCCTTGTTCTGTTTGAGTTTTATTTTTTTGACAATAGTGAGATCAGTTTAGACAAA 662
Query 657 GATTCAAAGTCTTGTTCTTGAATTCCTCATTGATGTCTTAGTTTTAGATATTTGTTGTTT 716
||||| ||| |||||||||||||| ||| |||| ||||||||||||||||||| |||
Sbjct 663 GATTCTAAGCCTTGTTCTTGAATTACTCC---ATGTATTAGTTTTAGATATTTGTTATTT 719
Query 717 TGATATCATGAAGCCTAAAAAAT 739
||||||||||||||| |||||||
Sbjct 720 TGATATCATGAAGCCAAAAAAAT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5