BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496536
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63490.1 | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1... 2939 0.0
AT5G63480.1 | Symbols: | unknown protein; Has 30201 Blast hits... 52.8 1e-05
> AT5G63490.1 | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1)
domains-containing protein | chr5:25418594-25422184 REVERSE
LENGTH=1807
Length=1807
Score = 2939 bits (1591), Expect = 0.0
Identities = 1724/1787 (96%), Gaps = 13/1787 (1%)
Strand=Plus/Plus
Query 1 AATCCATTTGTTGACCCGACGAATTTCGTCTGTAGAAATGGCTAGCCAAGGCGGGTCATC 60
||||||||||||||||||||||| | || ||||||| |||||||||||||||||| | |
Sbjct 18 AATCCATTTGTTGACCCGACGAA-TCCGCCTGTAGATATGGCTAGCCAAGGCGGG-C--C 73
Query 61 AAGACGGAGCTTATCTGTTACGACTGCGTCATTGCACGGAAAGAAGAAATCCATGGATAT 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 AAGACGGAGCTTATCCGTTACGACTGCGTCATTGCACGGAAAGAAGAAATCCATGGATAT 133
Query 121 CGG-TGAACGAGGTCCCGACACTGGCCGGAGATCTCTTACTGTTTCTCGTTCTCCTTTGG 179
|| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 134 -GGCCGAACGAGGTCTCGATACTGGCCGGAGATCTCTTACTGTTTCTCGTTCTCCTTTGG 192
Query 180 GTTTAACAGGAGGCGAGCGAACTGTTAAACGGTTAAGGCTTTCGAAAGCTCTTACAGTAC 239
||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||
Sbjct 193 GTTTAACAGGAGGCGAGCGGACTGTGAAACGGTTAAGGCTATCGAAAGCACTTACAGTAC 252
Query 240 CAGCAACAACAACTATTTATGAAGCTTGTAAAAGGATGGCTTCACGACGAGTTGATGCTT 299
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 253 CAGCAACAACAACTATATATGAAGCTTGTAAAAGGATGGCTTCACGACGAGTTGATGCCT 312
Query 300 TGTTGTTGACTGACTCTAATGAAATGCTCTGTGGGATTCTTACTGATAAGGACATAGCTA 359
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 313 TGTTGTTGACTGACTCTAATGAAATGCTTTGTGGTATTCTTACTGATAAGGACATAGCTA 372
Query 360 CAAGAGTGATTTCACAGGAAGTTAATGTCGAGGAAACACCTGTATCCAAGGTTATGACGA 419
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 373 CAAGAGTGATTTCACAGGAACTTAATGTCGAGGAAACACCTGTATCTAAGGTTATGACGA 432
Query 420 AGAACCCAATGTTTGTTCTCTCTGAAACACTTGCTGTTGAAGCCCTCCAAAAGATGGTCC 479
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 433 AGAACCCAATGTTTGTTCTCTCAGAAACACTTGCTGTTGAAGCTCTCCAAAAGATGGTCC 492
Query 480 AAGGAAAATTCAGATATCTGCCTGTTGTTGAAAATGGCGAAGTTATTGCTTTATTAGATA 539
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 493 AAGGAAAATTCAGACATTTGCCGGTTGTTGAAAATGGCGAAGTTATTGCTTTATTAGATA 552
Query 540 TAGCAAAGTGTCTGTATGATGCGATTGCTCGTATGGAGAGGGCAGCTGAGAAAGGTAAGG 599
||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 553 TAGCAAAGTGTTTGTATGATGCAATTGCTCGTATGGAGAGGGCTGCTGAGAAAGGTAAGG 612
Query 600 CAATAGCTGCTGCTGTTGAAGGTGTTGAAAAAAGTTGGGGGACAAACACTTCAGTTCCCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CAATAGCTGCTGCTGTTGAAGGTGTTGAAAAAAGTTGGGGGACAAACACTTCAGTTCCCA 672
Query 660 ACACTTTCATTGAAACGCTACGAGACCGGATGTTTAGACCTTCTTTATCAACAATTATAC 719
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 ACACTTTTATTGAAACGCTACGAGACCGGATGTTTAGACCTTCTTTATCAACAATTATAC 732
Query 720 CAGATGATACAAAGGTTCTGAAAGTCTCACCGACAGACACAGTGTTGACTGTAGCAAAGA 779
||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct 733 CAGATGATACAAAGGTTTTGAAAGTCTCACCAACTGACACAGTGTTGACTGTAGCAAAGA 792
Query 780 AGATGGTTGAATTTCAATCAAGCTGTGCAGTCGTGATAATCGAGGACAAGCTTCGAGGGA 839
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGATGGTTGAATTCCAATCAAGCTGTGCAGTCGTGATAATCGAGGACAAGCTTCGAGGGA 852
Query 840 TATTTACTTCCAAGGATATACTGATGCGGGTTGTGGCTGAAAATCTTTCTCCATCTGAGA 899
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 853 TATTTACTTCCAAGGATATACTGATGCGGGTTGTGGCTGAAAATCTTCCTCCATCTGAGA 912
Query 900 CTCTAGTGGAAACGGTTATGACTCAAAATCCAGAATCTACGATAGTTGACACACCAATTG 959
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 913 CTCTAGTGGAAACGGTTATGACTCAGAATCCAGAATCTACGATAGTTGACACACCAATTG 972
Query 960 TTGAAGCTCTGCACATCATGCACGAGGGAAAATTCTTACACCTTCCCGTTACTGACAAAG 1019
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TTGAAGCTCTACACATCATGCACGAGGGAAAATTCTTACACCTTCCCGTTACTGACAAAG 1032
Query 1020 AAGGAGATGTAGTTGCAGTTGTCGATGTAATCCATGTCACTCACGCGGCTGTTGCCACAG 1079
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1033 AAGGAGATGTAGTTGCTGTTGTCGATGTAATCCATGTCACTCACGCTGCTGTTGCCACAG 1092
Query 1080 CTGGAACTACTGCGGGAATAGGTAATGAGGCGACAAACACAATGATGCAAAAGTTTTGGG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 CTGGAACTACTGCGGGAATAGGTAATGAGGCGACAAACACAATGATGCAAAAGTTTTGGG 1152
Query 1140 ATTCAGCAATGGCATTGTCTCCTAATGAGGACGATGAGGACTCGAGAAGTGAGAGCTCCA 1199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ATTCAGCTATGGCATTGTCTCCTAATGAGGACGATGAGGACTCGAGAAGTGAGAGCTCCA 1212
Query 1200 TGAAAGTTGCTTCCGAAGCTGAGACAGGAAAATCTTTCCCTTTTGCAAATACATTTTCGT 1259
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1213 TGAAGGTTGCTTCCGAAGCTGAGACAGGAAAATCTTTCCCTTTTGCAAATACATTTTCTT 1272
Query 1260 TCAAGATTGAAGACAAAAAGCACAGAAAACACAGATTCATAAGCGACACTCGGAGTTTGA 1319
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1273 TCAAAATTGAAGACAAAAAGCACAGGAAACACAGATTCATAAGCGACACTCGGAGTTTGA 1332
Query 1320 CAGAGGTGATAACCGCGATCATTCAGAGGGTAGGGGATGATATCGATCCAGATAACTTAC 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1333 CAGAGGTGATAACCGCGATCATTCAGAGGGTAGGGGATGATATCGATCCAGATAACTTCC 1392
Query 1380 CCCAAATTTTGTATGAAGACGAAGACCATGATAAAGTGTTGTTGGCTTCAGATAGTGACC 1439
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1393 CCCAAATTTTGTATGAAGATGAAGACCACGATAAAGTGTTGTTGGCTTCAGATAGTGACC 1452
Query 1440 TTCAAGCAGCCATAGAACATGCAAAATCAATTGGCTGGAAGAGTCTCAGATTACATTTGG 1499
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1453 TTCAAGCAGCCATAGAGCATGCAAAATCAATTGGCTGGAAGAGTCTGAGATTACATTTGG 1512
Query 1500 ATGATTCAAGAGAAGGCAAAGGAAGAAGAAGGAGAAGAGCATCAGGATCAGCAGAATCAA 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 ATGATTCAAGAGAAGGCAAAGGAAGAAGAAGGAGAAGAGCATCAGGATCAGCAGAATCAA 1572
Query 1560 TGGAGTATGTAGAGACAGACGCTTGGGCTGCTGCTTATAGTGGAGTTGCGGCTGGTGCAG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TGGAGTATGTAGAGACAGACGCTTGGGCTGCTGCTTATAGTGGAGTTGCGGCTGGTGCAG 1632
Query 1620 CATTAGTAGCTGGTCTTGGTTTTATGGCCTTTCTCAGAAAATTCGGTCATTGATTCCTCA 1679
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1633 CATTAGTAGCTGGTCTTGGTTTTATGGCTTTTCTCAGAAAATTCGGTCATTGATTCCTCA 1692
Query 1680 -AAATCACTACAAAAAGTGTTTCTTTAACAGAACAATACAAACaaaaaaaaaaagaaaaa 1738
||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1693 GAAA-CACTACAAGAAGTGTTTCTTTAACAGATCAATACAAACAAAAAA-----GAAAAA 1746
Query 1739 CAGACACAGATTTTGAAGGTTTTGTCTGAAATATTTTTATATACAAA 1785
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1747 CAGACACAGGGTTTGAAGGTTTTGTCTGAAATATTTTTATATACAAA 1793
> AT5G63480.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25417265-25418635
FORWARD LENGTH=784
Length=784
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1758 TTTTGTCTGAAATATTTTTATATACAAA 1785
||||||||||||||||||||||||||||
Sbjct 784 TTTTGTCTGAAATATTTTTATATACAAA 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88302758655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5