BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496538
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63510.2 | Symbols: GAMMA CAL1 | gamma carbonic anhydrase li... 843 0.0
AT3G48680.1 | Symbols: GAMMA CAL2 | gamma carbonic anhydrase-li... 743 0.0
> AT5G63510.2 | Symbols: GAMMA CAL1 | gamma carbonic anhydrase
like 1 | chr5:25423967-25425871 FORWARD LENGTH=1186
Length=1186
Score = 843 bits (456), Expect = 0.0
Identities = 538/576 (93%), Gaps = 11/576 (2%)
Strand=Plus/Plus
Query 438 GATTACCAGCAGAGACAATTATCGACAGGTACGTGACAGTGGGTGCCTACAGTCTTCTAA 497
|||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||||| |
Sbjct 551 GATTACCAGCAGCGACAATAATCGACAGGTATGTGACAGTAGGTGCCTACAGTCTTCTGA 610
Query 498 GATCATGTACCATCGAACCAGAGTGCATCATTGGCCAACACTCAATACTAATGGAAGGAT 557
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 611 GATCATGTACCATCGAACCAGAGTGCATCATCGGTCAACACTCAATACTAATGGAAGGCT 670
Query 558 CTCTGGTCGAGACCCGGTCAATCCTGGAAGCAGGTTCGGTTGTGCCACCAGGAAGAAGGA 617
| ||||| ||||||||||||||| ||||||| ||||| |||||||| |||||||||||||
Sbjct 671 CACTGGTTGAGACCCGGTCAATCTTGGAAGCGGGTTCAGTTGTGCCGCCAGGAAGAAGGA 730
Query 618 TCCCATCAGGTGAACTATGGGGAGGCAATCCAGCAAGATTCATAAGAACCCTAACCAATG 677
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 731 TCCCATCAGGTGAACTATGGGGAGGCAATCCAGCAAGATTCATTAGAACCCTAACCAACG 790
Query 678 AAGAAACACTAGAGATCCCAAAACTCGCTGTAGCCATCAACCACTTAAGCGGAGATTACT 737
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AAGAAACCCTAGAGATCCCAAAACTCGCTGTAGCCATCAACCACTTAAGCGGAGATTACT 850
Query 738 TCTCTGAGTTCCTACCTTACTCAACCGTCTACTTAGAGGTAGAGAAGTTCAAGAAGTCCC 797
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 851 TCTCTGAGTTCCTACCTTACTCAACTGTCTACTTAGAGGTAGAGAAGTTCAAGAAGTCCC 910
Query 798 TTGGGATCGCAGTTTAGAAGCTTG-TCTTTTTCGTGATTCACTTTCATGTGCTTATCTAT 856
|||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 911 TTGGGATCGCCGTTTAGAAGCTTCATCTTTTTCGTGATTCACTTTCATGTGTTTATCTAT 970
Query 857 CATATGAGGTCTCTCTCTCTGCATATTGCAATAAGTAGCTGAAGAACATCAAAACAAGTC 916
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 971 CATATGAGGTCTTTCTCTCTGCATATTGCAATAAGTAGCTGATGAACATCAAAACAAGTC 1030
Query 917 CGGCTCTTCTTCGTTTTTGGTTCTCAAATGTTTGTC-TTCTCGtttttttttGGGTTCGT 975
||||||| ||| |||| |||||| ||| ||||||| || ||||||||| |||||| |
Sbjct 1031 CGGCTCT-CTT--TTTT-GGTTCTAAAACGTTTGTCATT-TCGTTTTTT---GGGTTCTT 1082
Query 976 TGTAAAATTCCATTTAAA-CTGATTTTGGCTGGATA 1010
|||||||||||||||||| ||||||||||||| |||
Sbjct 1083 TGTAAAATTCCATTTAAAACTGATTTTGGCTGAATA 1118
Score = 715 bits (387), Expect = 0.0
Identities = 420/436 (96%), Gaps = 2/436 (0%)
Strand=Plus/Plus
Query 3 ctctctctctTTTCCTCTTTGCAAATCCTTGAAGAAATCCAAAATCCATAGCAATGGCGA 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 CTCTCTCTCTTTTCCTCTTTGCAAATCCTTGAAGAAATCCAAAATCCATAGCAATGGCGA 94
Query 63 CTTCAATAACTCGATTGTCTCGGAGAGGAGTTACTTCTAACCTGATCCGTCGTTGCTTCG 122
|||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 95 CTTCGATAGCTCGATTGTCTCGGAGAGGAGTCACTTCTAACCTGATCCGTCGTTGCTTCG 154
Query 123 CTGCGGAAGCGGCGTTGGCGACGAAGACAGAGGTGCCTAAGCCGCAATTGACGGTGTCGC 182
||||||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||
Sbjct 155 CTGCGGAAGCGGCGTTGGCGAGGAAGACAGAGTTACCTAAACCGCAATTCACGGTGTCGC 214
Query 183 CGTCGCCGGATCGTGTGAAATGGGACTACAGAGGCCAACGACAGATCATTCCTTTGGGAC 242
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 CGTCGACGGATCGTGTGAAATGGGACTACAGAGGCCAACGACAGATCATTCCTTTGGGAC 274
Query 243 AGTGG-TTACCGAAGGTAGCCGTTGATGCTTACGTGGCACCCAACGTTGTGCTGGCTGGT 301
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 AGTGGCTT-CCGAAGGTAGCCGTTGATGCTTACGTGGCACCCAACGTTGTGCTGGCTGGT 333
Query 302 CAGGTCACAGTCTGGGACGGCTCGTCGGTTTGGAACGGTGCCGTTTTACGCGGCGATCTC 361
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 334 CAGGTCACAGTCTGGGACGGCTCGTCTGTTTGGAACGGTGCCGTTTTGCGCGGCGATCTC 393
Query 362 AACAAAATCACCGTCGGATTCTGCTCGAATGTACAGGAACGGTGTGTTGTTCATGCCGCC 421
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 AACAAAATCACTGTTGGATTCTGCTCGAATGTACAGGAACGGTGTGTTGTTCATGCCGCC 453
Query 422 TGGTCGTCCCCAACAG 437
||||| ||||||||||
Sbjct 454 TGGTCTTCCCCAACAG 469
> AT3G48680.1 | Symbols: GAMMA CAL2 | gamma carbonic anhydrase-like
2 | chr3:18035011-18037041 FORWARD LENGTH=1135
Length=1135
Score = 743 bits (402), Expect = 0.0
Identities = 623/728 (86%), Gaps = 21/728 (3%)
Strand=Plus/Plus
Query 104 CTGATCCGTCGTTGCTTCGCTGCGGAAGC-G--GCGTTGGCGACGAAGACAGAGGTGCCT 160
||||| || |||| |||||| |||||||| | ||| ||||||| ||| || |||
Sbjct 157 CTGATTCGGCGTTACTTCGCCGCGGAAGCAGTAGCGGTGGCGAC---GACGGAAACACCT 213
Query 161 AAGCCGCAATTGAC-GGTGTCGCCGTCGCCGGATCGTGTGAAATGGGACTACAGAGGCCA 219
|| ||| ||| | | |||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 214 AAACCGAAATCG-CAGGTGACGCCGTCGCCGGATCGGGTAAAATGGGACTACAGAGGCCA 272
Query 220 -ACGACAGATCATTCCTTTGGGACAGTGGTTACCGAAGGTAGCCGTTGATGCTTACGTGG 278
| ||||||| |||||| ||||||||||| ||||||||||||| || |||||||||||||
Sbjct 273 GA-GACAGATAATTCCTCTGGGACAGTGGCTACCGAAGGTAGCTGTAGATGCTTACGTGG 331
Query 279 CACCCAACGTTGTGCTGGCTGGTCAGGTCACAGTCTGGGACGGCTCGTCGGTTTGGAACG 338
|||| ||||||||| |||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 332 CACCTAACGTTGTGTTGGCTGGTCAGGTCACCGTCTGGGACGGCTCGTCTGTATGGAACG 391
Query 339 GTGCCGTTTT-ACGCGGCGATCTCAACAAAATCACCGTCGGATTCTGCTCGAATGTACAG 397
|||||||||| | | || ||||| || || |||||||| ||||||||||| ||||| |||
Sbjct 392 GTGCCGTTTTGA-GAGGAGATCTTAATAAGATCACCGTTGGATTCTGCTCAAATGTCCAG 450
Query 398 GAACGGTGTGTTGTTCATGCCGCCTGGTCGTCCCCAACAGGATTACCAGCAGAGACAATT 457
|||||||||||||||||||| || |||||||| || ||||||||||||||| | || |||
Sbjct 451 GAACGGTGTGTTGTTCATGCTGCGTGGTCGTCGCCTACAGGATTACCAGCACAAAC-ATT 509
Query 458 -ATCGACAGGTACGTGACAGTGGGTGCCTACAGTCTTCTAAGATCATGTACCATCGAACC 516
||||| |||||||||||||| ||||| ||||||||| |||||||||| || ||||||||
Sbjct 510 GATCGATAGGTACGTGACAGTTGGTGCATACAGTCTTTTAAGATCATGCACTATCGAACC 569
Query 517 AGAGTGCATCATTGGCCAACACTCAATACTAATGGAAGGATCTCTGGTCGAGACCCGGTC 576
||| |||||||| || ||||||||||| ||||||||||| || |||||||| ||||| ||
Sbjct 570 AGAATGCATCATCGGGCAACACTCAATCCTAATGGAAGGTTCACTGGTCGAAACCCGCTC 629
Query 577 AATCCTGGAAGCAGGTTCGGTTGTGCCACCAGGAAGAAGGATCCCATCAGGTGAACTATG 636
|||||| ||||| ||||| ||| | ||||| || ||||| |||||||| |||||||||||
Sbjct 630 AATCCTAGAAGCTGGTTCTGTTTTACCACCTGGCAGAAGAATCCCATCTGGTGAACTATG 689
Query 637 GGGAGGCAATCCAGCAAGATTCATAAGAACCCTAACCAATGAAGAAACACT-AGAGATCC 695
|||||||||||||||||| || || |||| || |||||||||||||| || ||||||||
Sbjct 690 GGGAGGCAATCCAGCAAGGTTTATTCGAACACTCACCAATGAAGAAAC-CTTAGAGATCC 748
Query 696 CAAAACTCGCTGTAGCCATCAACCACTTAAGCGGAGATTACTTCTCTGAGTTCCTACCTT 755
| ||||| ||||| ||||| |||||| |||| |||||||||||||| |||||| | ||||
Sbjct 749 CGAAACTTGCTGTTGCCATTAACCACCTAAGTGGAGATTACTTCTCAGAGTTCTTGCCTT 808
Query 756 ACTCAACCGTCTA-CTTAGAGGTAGAGAAGTTCAAGAAGTCCCTTGGGATCGC-AGTTTA 813
||||||| |||| || |||||| |||||||||||||| |||||||| ||||| | | ||
Sbjct 809 ACTCAACTATCTATCT-AGAGGTTGAGAAGTTCAAGAAATCCCTTGGAATCGCCA-TCTA 866
Query 814 GAA-GCTT 820
||| ||||
Sbjct 867 GAAAGCTT 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50686254323
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5