BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496546
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63570.1 | Symbols: GSA1 | glutamate-1-semialdehyde-2,1-amin... 2529 0.0
AT3G48730.1 | Symbols: GSA2 | glutamate-1-semialdehyde 2,1-amin... 1295 0.0
> AT5G63570.1 | Symbols: GSA1 | glutamate-1-semialdehyde-2,1-aminomutase
| chr5:25451875-25453841 FORWARD LENGTH=1728
Length=1728
Score = 2529 bits (1369), Expect = 0.0
Identities = 1599/1704 (94%), Gaps = 40/1704 (2%)
Strand=Plus/Plus
Query 1 AATCAGAAGCCCACCCACTTCGATTACCAACTCCGACCGCCAGAGACAGCGAGCTTCAAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 17 AATCATAAGCCCACCCACTTCGATTACCAACTCCGACCGCCAGAGACAGCGAGTTTCAGA 76
Query 61 GCAACGATGTCGGCGACGCTTACAGGATCGGGAACTGCTTTGGGGTTTTCGTGTTCCTCA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TCAAAGATGTCGGCGACGCTTACAGGATCGGGAACTGCTTTGGGGTTTTCGTGTTCCTCG 136
Query 121 AAGATCTCGAAAAGAATTTCTTCTTCGCC-GTCTTCTAATCGATGCTGCATCAAGATGTC 179
||||||||||||||| |||||||||| || | ||||||| ||||||||||||||||||||
Sbjct 137 AAGATCTCGAAAAGAGTTTCTTCTTCACCAG-CTTCTAACCGATGCTGCATCAAGATGTC 195
Query 180 TGTTTCCGTCGACGAGAAGAAGAAAAGTTTCACTCTTCAGAAATCCGAGGAAGCTTTCAA 239
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 196 TGTTTCCGTCGACGAGAAGAAGAAAAGTTTCAGTCTTCAGAAATCTGAGGAAGCTTTCAA 255
Query 240 TGCTGCTAAGAATCTAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCCTTCAAATCCGT 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 256 TGCTGCTAAGAATCTAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCATTCAAATCCGT 315
Query 300 TGGTGGACAACCTGTTTTGATTGATTCCGTTAAAGGCTCAAAAATGTGGGACATTGATGG 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 316 TGGTGGACAACCTGTTTTGATTGATTCTGTTAAAGGCTCAAAAATGTGGGACATTGATGG 375
Query 360 AAATGAGTACATTGACTACGTTGGCTCTTGGGGACCAGCTATTATTGGCCATGCCGATGA 419
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 376 AAATGAGTATATTGACTACGTTGGCTCTTGGGGACCTGCTATTATTGGCCATGCTGATGA 435
Query 420 CGAGGTTCTTGCAGCTTTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGCTCCTTG 479
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CGAGGTTCTTGCGGCTCTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGCTCCTTG 495
Query 480 TCTCTTAGAGAATGTTTTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTGAAATGGT 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TCTCTTGGAGAATGTTTTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTGAAATGGT 555
Query 540 TCGGTTTGTCAACTCTGGTACTGAAGCGTGTATGGGTGTGCTCCGTCTCGCCAGAGCTTT 599
||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 556 TCGGTTTGTTAATTCTGGTACTGAAGCGTGTATGGGTGTGCTTCGTCTTGCCAGAGCTTT 615
Query 600 CACTAACAAAGAGAAATTCATCAAGTTTGAAGGGTGTTATCACGGTCATGCTAACGCCTT 659
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 616 CACTAACAAAGAGAAGTTCATTAAGTTTGAAGGGTGTTATCACGGTCATGCTAACGCCTT 675
Query 660 TCTTGTTAAAGCTGGTAGCGGTGTAGCCACTCTAGGGCTACCGGACTCACCAGGTGTCCC 719
||||||||||||||||| ||||| |||||| | |||||||||||||| |||||||||||
Sbjct 676 CCTTGTTAAAGCTGGTAGTGGTGTTGCCACTTTGGGGCTACCGGACTCTCCAGGTGTCCC 735
Query 720 TAAAGCAGCTACTTCTGATACTTTAACAGCTCCGTACAACGATCTCGAAGCTGTTGAGAA 779
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 736 TAAAGCAGCTACTTCAGATACTTTAACAGCTCCGTACAATGATCTTGAAGCTGTTGAGAA 795
Query 780 GCTCTTTGCAGCGCATAAAGGGGAGATTTCTGCGGTTATTCTCGAACCCGTTGTTGGTAA 839
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 796 GCTCTTTGCTGCGCATAAAGGGGAGATTTCTGCGGTAATTCTCGAACCTGTTGTTGGTAA 855
Query 840 CTCTGGATTCATCCCTCCTACACCGGAATTCATCAACGGTTTACGCCAGCTTACTAAAGA 899
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 856 CTCCGGATTCATCCCTCCTACTCCGGAATTCATCAACGGTTTACGCCAGCTTACTAAAGA 915
Query 900 CAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACCGGATTTCGTCTAGCCTATGGTGG 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 916 CAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACTGGATTTCGTCTAGCCTATGGTGG 975
Query 960 AGCCCAAGAATACTTCGGAATCACGCCTGATCTAACTACTCTTGGTAAAATTATTGGCGG 1019
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 976 AGCCCAAGAATACTTTGGAATCACGCCTGATCTAACTACTCTTGGTAAAATTATTGGTGG 1035
Query 1020 GGGTCTTCCCGTGGGAGCATACGGTGGGAGACGTGATATTATGGAGATGGTTGCGCCCGC 1079
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1036 GGGTCTTCCCGTGGGAGCATACGGTGGTAGACGTGATATTATGGAGATGGTTGCTCCCGC 1095
Query 1080 AGGACCAATGTACCAAGCTGGGACTCTAAGTGGTAATCCGCTGGCAATGACTGCAGGGAT 1139
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TGGACCAATGTACCAAGCCGGGACTCTAAGTGGTAATCCGCTGGCAATGACTGCAGGGAT 1155
Query 1140 TCACACGCTGAAGCGGCTAAAGCAGGCAGGAACATATGAGTATTTAGACAAGATCACAAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1156 TCACACGCTGAAGCGGCTAAAGCAGGCAGGAACATATGAGTATTTAGACAAGATCACGAA 1215
Query 1200 GGAACTAACCAACGGAATCTTAGAAGCTGGAAAGAAAACCGGGCATCCAATGTGCGGCGG 1259
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1216 GGAACTAACCAACGGAATCTTAGAAGCCGGAAAGAAAACCGGGCATCCAATGTGCGGGGG 1275
Query 1260 TTATATAAGCGGTATGTTTGGTTTCTTTTTCGCAGAAGGACCGGTCTACAACTTTGCAGA 1319
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1276 TTACATAAGCGGTATGTTTGGATTCTTTTTCGCAGAAGGACCGGTTTACAACTTTGCAGA 1335
Query 1320 -TGCAAAGAAGAGCGACACCGAGAAGTTTGGTAGGTTTTTCAGGGGAATGTTGGAAGAAG 1378
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CT-CAAAGAAGAGCGACACAGAGAAGTTTGGTAGGTTTTTCAGGGGAATGTTGGAAGAAG 1394
Query 1379 GTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCTTGGCTCACACTCCCG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCTTGGCTCACACTCCCG 1454
Query 1439 AGGATATACAGTTCACGATTGCTGCGGCTGAGAGGGTACTCAGTAGGATCTAGAATGTTC 1498
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1455 AGGATATACAGTTAACAATTGCTGCGGCTGAGAGGGTACTGAGTAGGATCTAGAATGTTC 1514
Query 1499 CCAACCCTGAGTCTAGCTTCACAATCTT-ATGCTTT--------TG---ATG-----A-- 1539
|||||||||||||||| ||||||||||| ||| ||| || ||| |
Sbjct 1515 CCAACCCTGAGTCTAGTTTCACAATCTTCATGTTTTGGGGACGATGTGTATGGTTTGATG 1574
Query 1540 A-CGGATGAAATAATTCTTGTGTAGTGAGTTGAATTTTGTTTTCTTTTGTTTCATCGATA 1598
| |||||| ||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 1575 AGCGGATGGAATAATTCTTGTGTAGTGAGTTGAATTTTGTTT-CAT------CA--G-TA 1624
Query 1599 GAGGTTGAGGTTTTT-GTATTGTCAGATCATCTGTTCTGTTAATGTAATGGTTTTATGTT 1657
||| ||||| ||||| ||||| | |||||||||||| |||||||||||||||||||
Sbjct 1625 GAGCTTGAGATTTTTTGTATTTTAAGATCATCTGTT-----AATGTAATGGTTTTATGTT 1679
Query 1658 ATCTCCTAGAGAAATATTGCTTTT 1681
|||||||| |||||||||||||||
Sbjct 1680 ATCTCCTAAAGAAATATTGCTTTT 1703
> AT3G48730.1 | Symbols: GSA2 | glutamate-1-semialdehyde 2,1-aminomutase
2 | chr3:18049614-18051702 FORWARD LENGTH=1654
Length=1654
Score = 1295 bits (701), Expect = 0.0
Identities = 1211/1455 (83%), Gaps = 43/1455 (3%)
Strand=Plus/Plus
Query 60 AGCAACGATGTCGGCGACGCTTACAGGATC-GGGAACTGCTTTGGGGTTTTCGTGTTCCT 118
||||| ||| | ||||||||||| ||||| ||| | |||| | ||||||||||| |||
Sbjct 78 AGCAA-AATGGCTGCGACGCTTACTGGATCAGGG-ATTGCTCTAGGGTTTTCGTGCTCCG 135
Query 119 CAAAGATCTCGAAAAGAATTTCTTCTTCGCCGTCTTCTAATCGAT-GCTGCATCAAGATG 177
||||| |||| || || | |||||||| |||| | || || | ||||||||||||||
Sbjct 136 CAAAGTTCTCTAAGAG-A--GCTTCTTCGTCGTC--C-AACCG-TCGCTGCATCAAGATG 188
Query 178 TCTGTTTCCGTCGACGAGAAGAAGAA-AAGTTTCACTCTTCAGAAATCCGAGGAAGCTTT 236
|| ||||| || || ||||||| ||| || ||||||||||||||||| |||||||||||
Sbjct 189 TCGGTTTCGGTAGAGGAGAAGACGAAGAA-ATTCACTCTTCAGAAATCTGAGGAAGCTTT 247
Query 237 CAATGCTGCTAAGAATC-TAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCCTTCAAAT 295
||||||||| ||||| | ||||||||||||||||||| || ||||| || || |||||||
Sbjct 248 CAATGCTGCGAAGAA-CTTAATGCCTGGAGGTGTGAACTCACCTGTACGTGCTTTCAAAT 306
Query 296 CCGTTGGTGGACAACCTGTTTTGATTGATTCCGTTAAA-GGCTCAAAAATGTGGGACATT 354
| |||||||||||||| || |||| ||||| | ||| |||||| ||| | ||||||
Sbjct 307 CTGTTGGTGGACAACCAGTGGTGATGGATTCTG-CAAAGGGCTCACGAATAAGAGACATT 365
Query 355 GATGGAAATGAGTACATTGACTACGTTGGCTCTTGGGGACCAGCTATTATTGGCCATGCC 414
||||||||||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||||
Sbjct 366 GATGGAAATGAATACATTGACTATGTTGGATCTTGGGGACCTGCTATAATTGGTCATGCT 425
Query 415 GATGACGAGGTTCTTGCAGCTTTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGCT 474
||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 426 GATGATGAGGTTCTTGCTGCTTTGGCTGAGACAATGAAGAAAGGAACAAGCTTTGGTGCT 485
Query 475 CCTTGTCTCTTAGAGAATGTT-TTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTGA 533
||||||||||||||||||||| || ||||||||||| || ||||||||||| || |||||
Sbjct 486 CCTTGTCTCTTAGAGAATGTTCTT-GCTGAGATGGTGATTTCAGCTGTTCCAAGTATTGA 544
Query 534 AATGGTTCGGTTTGTCAACTCTGGTACTGAAGCGTGTATGGGTGTGCTCCGTCTCGC-CA 592
||||||||||||||| ||||| ||||| || || |||||||||||||| ||||| || |
Sbjct 545 AATGGTTCGGTTTGTTAACTCCGGTACAGAGGCATGTATGGGTGTGCTACGTCTTGCTC- 603
Query 593 GAGCTTTCACTAAC-AAAGAGAAA-TTCATCAAGTTTGAAGGGTGTTATCACGGTCATGC 650
| || ||||| | ||| | ||| ||||||||||||||||| |||||||| ||||||||
Sbjct 604 GTGCCTTCAC-AGGGAAACA-AAAGTTCATCAAGTTTGAAGGTTGTTATCATGGTCATGC 661
Query 651 TAACGCCTTTC-TTGTTAAAGCTGGTAGCGGTGTAGCCACTCTAGGG-CTACCGGACTCA 708
||| | |||| |||| ||||| ||||| |||||||| ||| | ||| ||||| |||||
Sbjct 662 AAACTC-TTTCCTTGTCAAAGCAGGTAGTGGTGTAGCTACTTT-GGGTCTACCTGACTCG 719
Query 709 CCAGGTGTCCCTAAAGCAGCTACTTCTGATACTTTAACAGCTCCGTACAACGATCTCGAA 768
|| || ||||| |||||||||||||| ||||||||||||||||| ||||| ||| | |
Sbjct 720 CCTGGGGTCCCCAAAGCAGCTACTTCAGATACTTTAACAGCTCCATACAATGATATTGCT 779
Query 769 GCTGTTGAGAAGCTCTTTGCAGCGCATA-AAGGG-GAGATTTCTGCGGTTATTCTCGAAC 826
|||||||||||||| |||| || ||| | || || |||||| |||| | ||||| ||||
Sbjct 780 GCTGTTGAGAAGCTTTTTG-AG-GCAAACAAAGGAGAGATTGCTGCCATCATTCTTGAAC 837
Query 827 CCGTTGTTGGTAACTCTGGATTCATCCCTCCTACACCGGAATTCATCAACGGTTTACGCC 886
| |||||||||||||| || || || | |||| ||| || ||||| | || ||||||
Sbjct 838 CTGTTGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAATACGCC 897
Query 887 AGCTTACTAAAGACAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACCGGATTTCGTC 946
| | |||||||||||||||| |||||| || ||||||||||||||||| || ||||||
Sbjct 898 GGATCACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACTGGTTTTCGTT 957
Query 947 TAGCCTATGGTGGAGCCCAAGAATACTTCGGAATCACGCCTGATCT-AACTACTCTTGGT 1005
|||||||||||||||| ||||||||||| |||||||| ||||| || ||| ||||||||
Sbjct 958 TAGCCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGA-CTTAACAACTCTTGGG 1016
Query 1006 AAAATTATTGGCGGGGGTCTTCCCGTGGGAGCATACGGTGGGAGACGTGATATTATGGAG 1065
||||| || || || |||||||| ||||||||||||||||| ||| | || || |||||
Sbjct 1017 AAAATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCATGGAA 1076
Query 1066 ATGGTTGCGCCCGCAGGACCAATGTACCAAGCTGGGACTCTAAGTGGTAATCCGCTGGCA 1125
|||||||| ||||||||||| ||||| |||||||| || ||||||||||||||| ||||
Sbjct 1077 ATGGTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGTTGGCT 1136
Query 1126 ATGACTGCAGGG-ATTCACACGCTGAAGCGGCTAAAG-CAGGCAGGAACATATGAGTATT 1183
||||| || ||| || ||||||||||||||| ||| | ||| |||| |||||||| || |
Sbjct 1137 ATGACAGC-GGGTATACACACGCTGAAGCGGTTAA-GTCAGCCAGGGACATATGAATACT 1194
Query 1184 TAGACAAGATCACAAAGGAACTAACCAACGGAAT-CTTAGAAGCTGGAAAGAAAACCGGG 1242
|||||||||||||||| || || || || || || || |||||| || ||||||||||||
Sbjct 1195 TAGACAAGATCACAAAAGAGCTTACAAATGGGATACT-AGAAGCCGGGAAGAAAACCGGG 1253
Query 1243 CATCCAATGTGCGGCGGTTATATAAGCGGTATGTTTGGTTTCTTTTTCGCAGAAGGACCG 1302
||| | ||||| |||||||| |||||||| ||||| |||||||| ||| | ||||||||
Sbjct 1254 CATGCGATGTGTGGCGGTTACATAAGCGGGATGTTCGGTTTCTTCTTCACGGAAGGACCC 1313
Query 1303 GTCTACAACTT-TGCAGATGCAAAGAAGAGCGACACCGAGAAGTTTGGTAGGTTTTTCAG 1361
||||| | || | | |||||||||||||| || || ||||||||||| | |||||||||
Sbjct 1314 GTCTATGATTTCT-CGGATGCAAAGAAGAGTGATACAGAGAAGTTTGGAAAGTTTTTCAG 1372
Query 1362 GGGAATGTTGGAAGAAGGTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAG 1421
|||||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||| ||
Sbjct 1373 AGGAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACTAG 1432
Query 1422 CTTGGCTCACACTCCCGAGGATATACAGTTCACGATTGCTGCGGCTGAGAGGGTACTCAG 1481
||||||||||||| | || || || || ||||| || || ||||| |||| ||| || ||
Sbjct 1433 CTTGGCTCACACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAAG 1492
Query 1482 TAGGATCTAGAATGT 1496
| || |||| |||||
Sbjct 1493 TCGGCTCTAAAATGT 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83081901975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5