BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496548
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63590.1 | Symbols: FLS3, ATFLS3 | flavonol synthase 3 | chr... 1029 0.0
> AT5G63590.1 | Symbols: FLS3, ATFLS3 | flavonol synthase 3 | chr5:25456993-25458470
REVERSE LENGTH=1149
Length=1149
Score = 1029 bits (557), Expect = 0.0
Identities = 638/675 (95%), Gaps = 14/675 (2%)
Strand=Plus/Plus
Query 250 ATCTTGAAGGTAGAAACGCATGGGTGGATCATCTCTTTCACCGCATCTGGCCACCGTCTA 309
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATCTAGAAGGTAGAAACGCATGGGTGGATCATCTCTTTCACCGCATCTGGCCACCGTCTA 380
Query 310 GAGTCAACCACAAATTCTGGCCTAAGAATCCTCGAGAGTACATTGAA-TG-A-G--GAGT 364
||||||| ||||||||||||||||||||||||| ||| ||||||||| || | | ||||
Sbjct 381 GAGTCAATCACAAATTCTGGCCTAAGAATCCTCCAGAATACATTGAAGTGAATGAAGAGT 440
Query 365 ACGCAAGTCACATAAAGAAGCTATCGGAGAAAATCATGGAATGGTTATCAGAAGGACTAG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ACGCAAGTCACATAAAGAAGCTATCGGAGAAAATCATGGAATGGTTATCAGAAGGACTAG 500
Query 425 GTTTAAGGCGTTTAAGGCGTGAGGCATTGAAGGAAGGTCTAGGCGGCGAAACGGTTGAGT 484
||||||||| | |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 501 GTTTAAGGC-----A----TGAGGCGTTGAAGGAAGGTCTAGGCGGCGAAACGATTGAGT 551
Query 485 ATCTAATGAAGATCAATTACTATCCGCCGTGTCCAGATCCGGAGTTGGTCGTGGGAGCTC 544
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 552 ATCTAATGAAAATCAATTACTATCCGCCGTGTCCAGATCCGGAGTTAGTCGTGGGAGCTC 611
Query 545 CCGATCACACTGATGTCAATGGAATCACACTCCTAGTCGCTAATGAGGCTTTAGGACTTC 604
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 612 CTGATCACACTGATGTCAATGGAATCACACTCCTAGTCGCTAATGAAGCTTTAGGGCTTC 671
Query 605 AGGCATTCAAAGATAACCAATGGATCGACGCCAAGTATACCACTTCCGGGATCATTGTCA 664
| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 672 AAGCATTCAAAGATAACCAATGGATCGACGCGGAGTATACCACTTCCGGGATCATCGTCA 731
Query 665 TCATCGGCGATCAATTCTTGAGAATGAGCAATGGGAAGTATAAGAGTGTGGAGCATAGGG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TCATCGGCGATCAATTCTTGAGAATGAGCAATGGGAAGTATAAGAGTGTGGAGCATAGGG 791
Query 725 CGAAGATGGATAAGGAGAAGACGAGAATCTCGTGGCCGGTTTTTGTGGAATCTAGCCTTG 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CGAAGATGGATAAGGAGAAGACGAGAATCTCGTGGCCGGTTTTTGTGGAATCTAGCCTTG 851
Query 785 ATCACGTCTTCGGACCTTTGCCAGAGCTAATTACCGGTGATGAGAACATTCCCAATTTTA 844
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 852 ATCAAGTCTTCGGACCTTTGCCGGAGCTAATTACCGGTGATGAGAACGTTCCCAAGTTTA 911
Query 845 AGCCTTACGTCTACAAAGATTACAAATTTCGTAAGCTTAAGAAGCTTCTTCTCGAATGAG 904
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 912 AGCCTTATGTCTACAAAGACTACAAATTTCGTAAGCTTAAGAAGCTTCTTCTCGACTGAG 971
Query 905 AAAGTCTCATAATAA 919
||| |||||||||||
Sbjct 972 AAAATCTCATAATAA 986
Score = 375 bits (203), Expect = 3e-103
Identities = 235/250 (94%), Gaps = 3/250 (1%)
Strand=Plus/Plus
Query 1 CGAAGCAGAAAAGAGTGAAACTGAAAACCATGGGAGATGGAGAAAAACCAACACATTTCT 60
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 15 CGAAGCAGGAACGAGTGAAACTGAAAACCAT-GGAGATGGAGAAAAACCAACACATTTCT 73
Query 61 TCTCCGGACATCCCCGTCATTGATCTATGTAGTCCCGATGAAGAGCTTGTGGCAATTGCG 120
|| | |||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct 74 TCGCTGGACATCCCCGTTATTGATCTAAGTAATCCCGATGAAGAGCTTGTGGCAAGTGCG 133
Query 121 GTGGTCAAAGCGAGCCAAGAGTGGGGGATATTTCAGGTGGTTAACCACGGAATCCCGACC 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 134 GTGGTCAAAGCGAGCCAAGAGTGGGGAATATTTCAGGTGGTTAACCACGGAATCCCGACC 193
Query 181 GAGCTGATACTGAGGTTGCAAGAAGTGGGGAA-GGAGTTTTTCGAGCTACCGGAGACAGA 239
|||||||||||| |||||| | ||||||| || |||||||||||||||||||||||||||
Sbjct 194 GAGCTGATACTGCGGTTGCTACAAGTGGG-AATGGAGTTTTTCGAGCTACCGGAGACAGA 252
Query 240 GAAGGAAGCC 249
||||||||||
Sbjct 253 GAAGGAAGCC 262
Score = 76.8 bits (41), Expect = 4e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 933 AATTAATAAGTTTTATCTATTTATCAAATTACAGCATTGTGTGT 976
|||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1047 AATTAATAAGTTTTATCTATTTATCAAATTACAGCATTGTTTGT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5