BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496549
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63600.2 | Symbols: FLS5, ATFLS5 | flavonol synthase 5 | chr... 1314 0.0
> AT5G63600.2 | Symbols: FLS5, ATFLS5 | flavonol synthase 5 | chr5:25460684-25462458
REVERSE LENGTH=1567
Length=1567
Score = 1314 bits (711), Expect = 0.0
Identities = 938/1042 (90%), Gaps = 38/1042 (4%)
Strand=Plus/Plus
Query 1 TTACCCTATTTAAACCCCCTCTAGCCTTCTTTTCTTTGTCACACTTATGAAGCAATGGAA 60
|||||||||||||| ||||||||||||| ||||| || |||||| ||||||||||||| |
Sbjct 135 TTACCCTATTTAAATCCCCTCTAGCCTTGTTTTCCTTCTCACACCTATGAAGCAATGG-A 193
Query 61 AG-CGAGAGAGACAACAAT--A-C--A----TCTCTCCCA---TT--G---GC------- 95
|| ||||||||| ||||| | | | ||||||||| || | ||
Sbjct 194 AGAAGAGAGAGACCACAATGCATCTGAGTCGTCTCTCCCATCTTTGAGCAAGCAGTTGGA 253
Query 96 GAGCTCAACTCTTGGAGGAAGCGC-G--GACGTTCCCGTCGTTGATCTAAGCGTTACTGA 152
|||||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 254 GAGCTCGACTCTTGGAGGAAGCGCGGTCGACGTTCCCGTCGTTGATCTAAGCGTTTCTGA 313
Query 153 TGAAGGA-TTCCTGGTGCGTGAGGTGACGAAGGCGAGTGAAGAGTGGGGAGTTTTTCAGG 211
|||| || ||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 314 TGAA-GACTTCTTGGTGCGTGAGGTGGTGAAAGCGAGTGAAGAGTGGGGAGTTTTTCAGG 372
Query 212 TGGTTAACCATGGGATTCCAACTGAGCTCATGTTGCAGCTGCAAATGGCTGGGAAGCAGT 271
|||||||||||||||||||||| ||||| ||| |||||||||||||| ||| | |||||
Sbjct 373 TGGTTAACCATGGGATTCCAACCGAGCTGATGCGGCAGCTGCAAATGGTTGGTACGCAGT 432
Query 272 TTTTCGAACTCCCGGAGGCGGAAAAGGAAACCGTGGCGAAAGAGGAAGACTTCGAAGGAT 331
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TTTTCGAGCTCCCGGATGCTGAAAAGGAAACCGTGGCGAAAGAGGAAGACTTCGAAGGAT 492
Query 332 TCAAGAGGAACTATCTAGGAGGTATAAACAATTGGGACGAACATCTGTTTCACAGACTCT 391
||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 493 ACAAGAAGAATTATCTAGGAGGTATAAACAATTGGGACGAACATCTCTTTCACAGACTCT 552
Query 392 CCCCACCCTCAATCATCAATTATAAATATTGGCCTAAGAATCCTCCTCAATACAGGGAGG 451
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 553 CTCCACCCTCAATTATCAATTATAAATATTGGCCTAAGAATCCTCCTCAATATAGGGAGG 612
Query 452 TGACTGAGGAGTACACAAAGCATATGAGGAGGCTAACGGAGAAGATTCTTGGTTGGTTAT 511
|||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 613 TGACGGAGGAGTATACAAAGCATATGAAGAGGCTAACGGAGAAGATTCTTGGTTGGTTAT 672
Query 512 CGGAGGGATTAGGGTTACCGCGTGAGACGTTCACGAAAAGTATAGGTGGTGAAACGGCAG 571
| |||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||
Sbjct 673 CAGAGGGATTAGGGTTACAGCGTGAGACGTTCACGCAAAGTATAGGTGGTGACACGGCAG 732
Query 572 AGTATGTGCTTAGAATCAATTTCTATCCGCCAACTCAAAACACTGATTTAACCATAGGAG 631
||||||||||||| ||||||||||||||||||||||| | || || ||| ||||||||
Sbjct 733 AGTATGTGCTTAGGGTCAATTTCTATCCGCCAACTCAAGATACGGAATTAGTCATAGGAG 792
Query 632 CTGCGGCGCACAGCGATATGGGTGCAATCGCACTCCTCATCCCCAATGAGGTTCCTGGAC 691
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 793 CCGCGGCGCACAGCGATATGGGTGCAATCGCACTCCTCATCCCAAATGAGGTTCCTGGAC 852
Query 692 TTCAAGCCTTCAAGGATGAACAATGGTTGGACCTTAACTATGTCAACTCCGCCGTTGTTG 751
|||||||||||||||| |||||||||||||||||| ||||| || |||||||||| ||||
Sbjct 853 TTCAAGCCTTCAAGGACGAACAATGGTTGGACCTTGACTATATCGACTCCGCCGTGGTTG 912
Query 752 TTATCATCGGCGATCAACTCATG--A-GGATGACCAACGGGAGGTTCAAGAACGTGCTTC 808
||||||| ||||||||||||||| | ||||||||||||||||||| |||||||| ||||
Sbjct 913 TTATCATTGGCGATCAACTCATGGTATGGATGACCAACGGGAGGTTAAAGAACGTTCTTC 972
Query 809 ACAGAGCGAAGACGGATCAGGA-AAGATTGAGGATATCTTGGCCTGTTTTTGTTGCGCC- 866
||||||||||| | ||| |||| || ||||||||| |||||||||||||||||||| ||
Sbjct 973 ACAGAGCGAAGTCTGATAAGGACAA-ATTGAGGATTTCTTGGCCTGTTTTTGTTGCACCT 1031
Query 867 ACGGGCTGATATGTCCGTCGGACCTTTGCCGGAGCTTACCGGAGACGACAATCCTCCTAA 926
| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 1032 A-GGGCTGATATGTCCGTCGGACCTTTGCCGGAGTTTACCGGAGACGAGAATCCTCCCAA 1090
Query 927 ATTTGAGACTTTGATATATAATGACTATATTGACCAGAAGATAAAAGGCTGGGCGCTCGA 986
||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1091 ATTCGAGACTTTAATATATAATGACTATATTGACCAGAAGATAAGAGGCTGGGCGCTCGA 1150
Query 987 AGATCTTCCTGTCTACTGAAAA 1008
||||||||||||||||||||||
Sbjct 1151 AGATCTTCCTGTCTACTGAAAA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5