BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496554
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63640.1 | Symbols: | ENTH/VHS/GAT family protein | chr5:25... 2796 0.0
> AT5G63640.1 | Symbols: | ENTH/VHS/GAT family protein | chr5:25477678-25481489
FORWARD LENGTH=1925
Length=1925
Score = 2796 bits (1514), Expect = 0.0
Identities = 1713/1806 (95%), Gaps = 26/1806 (1%)
Strand=Plus/Plus
Query 94 tctgtcttcttcttctccttcttc-ttcACGTATCTGTGAAATGCTCAAGCTGATTAGGG 152
||| |||||||||||| ||||||| || |||| |||||||||||||||||||||||||||
Sbjct 124 TCT-TCTTCTTCTTCTTCTTCTTCGTTTACGTCTCTGTGAAATGCTCAAGCTGATTAGGG 182
Query 153 TTTATCAACTCTTTCTTAACTTTCTTATTAT-TGCCTTCGTTATCCTCTCCGTCTTCTCA 211
|||||||||| ||||| ||||||||| |||| | |||||||||||||||| |||||||||
Sbjct 183 TTTATCAACTTTTTCTCAACTTTCTTGTTATCT-CCTTCGTTATCCTCTCTGTCTTCTCA 241
Query 212 GCTTTGTAGCTATTGTGTATTCGAATCTGTACGCGGAAGGAAAGCCCATAGAACAGTCAA 271
|||| | |||||||||| ||| ||| |||||| |||||| ||||||||||||| ||||||
Sbjct 242 GCTTAGCAGCTATTGTGCATTTGAAGCTGTACTCGGAAGAAAAGCCCATAGAAGAGTCAA 301
Query 272 ATATAACAAAATATGGCTGCGGAGCTTGTAAGTTCTGCAACAAGTGAGAAGCTTGCTGAT 331
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 302 ATATAACAAAAAATGGCTGCGGAGCTTGTAAGTTCTGCAACAAGTGAGAAGCTTGCAGAT 361
Query 332 GTGGACTGGACCAAAAACATTGAGATCTGTGAATTAGCTGCTCGAGATGAAAGGCAAGCA 391
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GTGGACTGGGCCAAAAACATTGAGATCTGTGAATTAGCTGCTCGAGATGAAAGGCAAGCA 421
Query 392 AAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAACCCAAATACTCAATTA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAACCCAAATACTCAATTA 481
Query 452 TATGCTGTCCAGTTGCTGGAGATGTTGATGAATAATATTGGAGAGAATATTCATAAGCAG 511
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TATGCTGTCCAGTTGCTAGAGATGTTGATGAATAATATTGGAGAGAATATTCATAAGCAA 541
Query 512 GTTATAGATACAGGTGTACTCCCTACACTTGTGAAGATAGTAAAGAAAAAATCGGATTTG 571
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 542 GTTATAGATACAGGTGTACTCCCTACGCTTGTGAAGATAGTAAAGAAAAAATCGGATTTG 601
Query 572 CCTGTAAGAGAGAGGATTTTTCTTCTTCTTGATGCAACTCAAACCTCCCTTGGTGGCGCT 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CCTGTAAGAGAGAGGATTTTTCTTCTTCTTGATGCAACTCAAACCTCCCTTGGTGGCGCT 661
Query 632 TCAGGGAAATTCCCTCAGTATTATACAGCATACTATGATTTAGTGCACGCAGGAGTTAAA 691
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 662 TCAGGGAAATTCCCTCAGTATTATACAGCATACTATGAATTAGTGAACGCAGGAGTTAAA 721
Query 692 TTTACCCAGAGACCTAATGCTACACCAGTTGTGGTCACTGCTGAAGCTGTTCCGAGAAAT 751
||||| ||||| ||||||||||||||||| |||||||||||| | |||||||||||||||
Sbjct 722 TTTACTCAGAGGCCTAATGCTACACCAGTCGTGGTCACTGCTCAGGCTGTTCCGAGAAAT 781
Query 752 ACGCTCAATGAACAACTTGCATCTGCTAGAAATGAAGGGCCTGCTACTACTCAGCAGCGA 811
|| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 782 ACCCTTAATGAACAACTTGCATCTGCCAGAAATGAGGGGCCTGCTACTACTCAGCAGCGA 841
Query 812 GAATCTCAAACTGTCTCTCCTTCGAGCATTTTACAAAAGGCTAGTACCGCATTAGAAGTT 871
||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct 842 GAATCTCAATCTGTCTCTCCTTCGAGTATTTTACAAAAGGCTAGTACTGCATTAGAAATT 901
Query 872 TTAAAGGAAGTGCTTGACGCAGTCGATTCTCAAAATCCTGAGGGGGCAAAAGATGAGTTT 931
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTGAAGGAAGTGCTTGACGCAGTCGATTCTCAAAATCCTGAGGGGGCAAAAGATGAGTTT 961
Query 932 ACTCTTGATCTTGTCGAGCAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATG 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 ACTCTTGATCTTGTCGAGCAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATG 1021
Query 992 ACATCGAGGGATGAAAAAGCAGTTTCTAAAGCAATTGAATTGAATGAGCAACTTCAGAGA 1051
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1022 ACATCGAGGGATGAAAAAGCAGTTTCTAAAGCAATCGAATTGAATGAGCAACTTCAGAGA 1081
Query 1052 ATTCTCAATAGACATGAAGATTTGCTGTCTGGCAGAATCACAGTTCCTAGCAGGTCTACT 1111
|||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1082 ATTCTCAATAGACACGAAGATTTGCTGTCTGGTAGAATCACTGTTCCTAGCAGGTCTACC 1141
Query 1112 ACATCCAATGGATATCATTCCAATCTCGAACCTATCCGTCCTATCTCAAACGGTCACAAT 1171
||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| || |
Sbjct 1142 ACATCAAATGGATATCATTCCAATCTCGAACCTGTCCGTCCTATCTCAAATGGTGACCAG 1201
Query 1172 AAA-GCCGAGCTAAAGGCTTCTAATGCAAATACCGAATCAAGCAGCTCCATTTCTAACCG 1230
||| || ||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1202 AAACGC-GAGCTAAAGGCTTCTAATGCAAACACCGAATCAAGCAGCTTCATTTCTAACCG 1260
Query 1231 AGCCCATCTTAAGCTTGAGGAAGAAGATGAGGAAGAGGAGCCTGAGCAGTTATTCAGAAG 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGCCCATCTTAAGCTTGAGGAAGAAGATGAGGAAGAGGAGCCTGAGCAGTTATTCAGAAG 1320
Query 1291 ATTGCGAAAAGGGAAAGCTAGAGCAAGGCCTGAGGATGAAGAAGAGCCATCACCTCCACA 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATTGCGAAAAGGGAAAGCTAGAGCAAGGCCTGAGGATGAAGAAGAGCCATCACCTCCACA 1380
Query 1351 AGGCTTACCTGGATCAGCAATCCATAACGAAAGACTTAACCGTCCACTTATTCGTCCTTT 1410
||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 AGGATTGCCTGGATCAGCAATACATAACGAAAGACTTAACCGTCCACTTATCCGTCCTTT 1440
Query 1411 ACCATCAGAGGAGGCATCACGCGGTGGTGATAGCCATTCGCAATCCCCACCTGTTGTGAT 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 ACCATCAGAGGAGGCATCACGCGGTGGTGATAGCCATTCGCAATCCCCACCTGTTGTGAT 1500
Query 1471 TCCACCACCACCTGCGAAACACGTTGAGAGGGAAAAATTCTTCAAGGAGAAGAAAGTTGA 1530
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 1501 TCCACCACCACCTGCGAAGCACGTTGAGAGGGAAAAATTCTTCAAGGAGAATAAAGGTGA 1560
Query 1531 CGGTGCCTCAGGTTTACCAGGTCATATGAGAGGCCTTTCTTTGCATAGCCGCGATGGCAG 1590
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1561 CGGTGCCTTGGGTTTACCAGGTCATATGCGAGGCCTTTCTTTGCATAGCCGTGATGGCAG 1620
Query 1591 CAGCTCACGCAGTGGAAGCGTAGACTTCAGTGACTGAAACAAACCAAAGCTCTCATCATC 1650
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1621 CAGCTCACGCAGTGGAAGCGTAGACTTCAGTGACTGAAACAA-CCAAAGCTCTCATCATC 1679
Query 1651 ATATATATGTATTCTTTCACGCTCGTTTCTTTAGGTTTTGGTAATTTACAGATGG-AAAA 1709
||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 1680 ATATATATGTATTCTTTCACGCTTGTTTCTTTAGGTTTTGTTAATTTACAGATGGGAAAA 1739
Query 1710 AGTTTGTGTTGTGTGT-GCTG------ctctatctctctc-c-ct--ctctctc-t-ct- 1755
|||||||||||||||| |||| |||| |||||||| | || ||||||| | ||
Sbjct 1740 AGTTTGTGTTGTGTGTTGCTGTTATTTCTCTCTCTCTCTCTCTCTTTCTCTCTCCTTCTA 1799
Query 1756 c-tct--AGTGTTGTGAATTTAGAATATAGCACCATGAGATCTGGTTATGTATACGAGTA 1812
| ||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 1800 CGTCTCTAGTGTTGTGAATTTAGAATGTAGCACGATGAGATCTGATTATGTATACGAGTA 1859
Query 1813 AA-GGTACTTCCTTTCACTATGTTCAAACCTGAGCTATGTTATTTACAGAGGTTGTTGTT 1871
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 AAAGGTACTTCCTTTCACTATGTTCAAACCTGAGCTATGTTATTTACAGAGGTTGTTGTT 1919
Query 1872 ACTGTT 1877
||||||
Sbjct 1920 ACTGTT 1925
Score = 196 bits (106), Expect = 5e-49
Identities = 117/122 (96%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 AATCTGATTTTAAGGAATTAA--TCTATTTGCCAAAGAAGAGGCGCAAAGGCTCCGTCct 58
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1 AATCTGATTTTAAGGAATTAATCTCTATTTGCCAAAGAAGAGGCGCAAAGGCTCCGTCTT 60
Query 59 ttttcttctccttgtttctgtgttaccgatctggctctgtcttcttcttctccttcttct 118
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TTTTCTTCTTCTTGTTTCTGTGTTACCGATCTGGCTCTGTCTTCTTCTTCTTCTTCTTCT 120
Query 119 tc 120
||
Sbjct 121 TC 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92921208795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5