BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496559
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63710.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3256 0.0
> AT5G63710.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:25499414-25502798 FORWARD LENGTH=2106
Length=2106
Score = 3256 bits (1763), Expect = 0.0
Identities = 1959/2054 (95%), Gaps = 12/2054 (1%)
Strand=Plus/Plus
Query 1 CCCATGTTTTTGTTCTCTTGTGTTTAGAGTG-TTTCAGCTTCTCTATGGCTCACTC-AGG 58
|||||||||| |||||||| |||||||||| |||||||| ||||||||||||||| ||
Sbjct 17 CCCATGTTTTCGTTCTCTTCCGTTTAGAGTGTTTTCAGCTCCTCTATGGCTCACTCGGGG 76
Query 59 AAGTTTTCGTGA-TCCTCTAAGA-ACTCGAAGAGGATTCATTCACAGAAATTGCTTTAGA 116
|| | | | | || | || ||| ||||||||||||| |||||||||||||||
Sbjct 77 AA-CGGT-GAAAGT-TTCCATGATCCTCTTCGAGGATTCATTCAAAGAAATTGCTTTAGA 133
Query 117 TGGAACAATCAGAAATTGATCTTACAATGCTTCATGGCCTTAGCTTTTGTGGGAGTCACT 176
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 134 TGGAACAATCAGAAATTGATCTTACAATGTTTCATGGCCTTAGCTTTTGTGGGAATCACT 193
Query 177 TCTTCAACAACTCAACCAGATATCGAAGGGGGAGCTTTGTTGCAGCTCAGAGATTCTCTT 236
|| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 194 TCGTCAACAACTCAACCAGATATCGAAGGAGGAGCTCTGTTGCAGCTCAGAGATTCGCTT 253
Query 237 AATGATTCGAGCAATCGTCTAAAATGGACACGCGATTTCGTGAGCCCTTGCTATAGTTGG 296
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 254 AATGATTCGAGCAATCGTCTAAAATGGACACGCGATTTTGTGAGCCCTTGCTATAGTTGG 313
Query 297 TCTTATGTTACCTGCAGAGGCCAGAGTGTTGTGGCTCTAAATCTTGCCTCAAATGGATTC 356
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 314 TCTTATGTTACCTGCAGAGGCCAGAGTGTTGTGGCTCTAAATCTTGCCTCGAGTGGATTC 373
Query 357 ACAGGAACACTATCTCCAGCTATTACAAAACTGAAGTTCTTGGTTACCTTAGAGTTACAG 416
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 ACAGGAACACTCTCTCCAGCTATTACAAAACTGAAGTTCTTGGTTACCTTAGAGTTACAG 433
Query 417 AACAATAGTTTATCTGGTGCCTTACCAGAGTCTCTTGGGAACATGGTTAATCTACAGACT 476
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 434 AACAATAGTTTATCTGGTGCCTTACCAGATTCTCTTGGGAACATGGTTAATCTACAGACT 493
Query 477 TTAAACCTATCAATGAACAGTTTCAGCGGCTCAATACCCGCAAGCTGGAGTCAGCTCTCG 536
|||||||||||| |||| ||||||||||| || ||||| || ||||||||||||||||||
Sbjct 494 TTAAACCTATCAGTGAATAGTTTCAGCGGATCGATACCAGCGAGCTGGAGTCAGCTCTCG 553
Query 537 AATCTAAAGCACTTGGATCTCTCATCCAATAATTTAACAGGAAGCATCCCAACACAATTC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 AATCTAAAGCACTTGGATCTCTCATCCAATAATTTAACAGGAAGCATCCCAACACAATTC 613
Query 597 TTCTCAATACCAACATTCGATTTTTCAGGAACTCAGCTCATATGTGGTAAAAGTTTGAAT 656
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 614 TTCTCAATCCCAACATTCGATTTTTCAGGAACTCAGCTTATATGCGGTAAAAGTTTGAAT 673
Query 657 CAGCCTTGCTCTTCAAGTTCTCGTCTACCAGTCACATCCTCCAAGAAGAAGCTGAGAGAC 716
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 674 CAGCCTTGTTCTTCAAGTTCTCGTCTTCCAGTCACATCCTCCAAGAAAAAGCTGAGAGAC 733
Query 717 ATTACTTTGACTGCAAGTTGTGTTGCTTCTATAATCTTATTCCTTGGAGCAATGGTTATG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 ATTACTTTGACTGCAAGTTGTGTTGCTTCTATAATCTTATTCCTTGGAGCAATGGTTATG 793
Query 777 TATCATCACCATCGCGTCCGCCA-AACCAAATACGACATCTTTTTCGATGTAGCTGGTGA 835
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||
Sbjct 794 TATCATCACCATCGCGTCCG-CAGAACCAAATACGACATCTTTTTTGATGTAGCTGGGGA 852
Query 836 AGATGACAGGAAGATTTCCTTTGGACAGCTAAAAAGATTCTCTTTACGTGAAATCCAGCT 895
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 853 AGATGACAGGAAGATTTCCTTTGGACAACTAAAACGATTCTCTTTACGTGAAATCCAGCT 912
Query 896 CGCAACAGATAGTTTCAACGAGAGCAATTTGATCGGACAAGGAGGATTTGGTAAAGTATA 955
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 913 CGCAACAGATAGTTTCAACGAGAGCAATTTGATAGGACAAGGAGGATTTGGTAAAGTATA 972
Query 956 CAGAGGTTTGCTTCCAGACAAAACAAAAGTTGCAGTGAAACGCCTTGCGGATTACTTCAG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CAGAGGTTTGCTTCCAGACAAAACAAAAGTTGCAGTGAAACGCCTTGCGGATTACTTCAG 1032
Query 1016 TCCTGGAGGAGAAGCTGCTTTCCAAAGAGAGATTCAGCTCATAAGCGTTGCGGTTCATAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TCCTGGAGGAGAAGCTGCTTTCCAAAGAGAGATTCAGCTCATAAGCGTTGCGGTTCATAA 1092
Query 1076 GAATCTCTTACGCCTTATTGGCTTCTGCACAACTTCCTCCGAGAGAATCCTTGTTTATCC 1135
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1093 AAATCTCTTACGCCTTATTGGCTTCTGCACAACTTCCTCTGAGAGAATCCTTGTTTATCC 1152
Query 1136 ATACATGGAAAATCTTAGTGTCGCATATCGACTAAGAGATTTGAAAGCGGGAGAGGAAGG 1195
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ATACATGGAAAATCTTAGTGTTGCATATCGACTAAGAGATTTGAAAGCGGGAGAGGAAGG 1212
Query 1196 ATTAGATTGGCCAACAAGGAAGCGTGTAGCTTTCGGTTCAGCTCATGGTTTAGAGTATCT 1255
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1213 ATTAGACTGGCCAACAAGGAAGCGTGTAGCTTTTGGTTCAGCTCACGGTTTAGAGTATCT 1272
Query 1256 ACACGAACATTGTAATCCGAAGATCATACACCGCGATCTCAAGGCTGCAAACATACTTTT 1315
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 ACACGAACATTGTAACCCGAAGATCATACACCGCGATCTCAAGGCTGCAAACATACTTTT 1332
Query 1316 AGACAACAATTTTGAGCCTGTTCTTGGAGATTTCGGTTTAGCTAAGCTTGTGGACACATC 1375
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGACAACAATTTTGAGCCAGTTCTTGGAGATTTCGGTTTAGCTAAGCTTGTGGACACATC 1392
Query 1376 ACTGACTCATGTCACAACTCAAGTCCGAGGAACAATGGGTCACATTGCGCCAGAGTATCT 1435
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1393 TCTGACTCATGTCACAACTCAAGTCCGAGGCACAATGGGTCACATTGCGCCAGAGTATCT 1452
Query 1436 CTGCACAGGAAAATCATCGGAAAAGACTGATGTTTTTGGTTACGGTATAACGCTTCTTGA 1495
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1453 CTGCACAGGAAAATCATCTGAAAAAACCGATGTTTTTGGTTACGGTATAACGCTTCTTGA 1512
Query 1496 GCTCGTTACTGGTCAGCGTGCAATCGATTTTTCACGCTTAGAAGAAGAGGAAAATATTCT 1555
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1513 GCTTGTTACTGGTCAGCGCGCAATCGATTTTTCACGCTTGGAAGAAGAGGAAAATATTCT 1572
Query 1556 CTTGCTTGATCACATAAAGAAGTTGCTTAGAGAACAGAGACTCAGAGACATTGTTGATAG 1615
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1573 CTTGCTTGATCATATAAAGAAGTTGCTTAGAGAACAGAGACTTAGAGACATTGTTGATAG 1632
Query 1616 CAATTTGACTACATATGACTCTAAAGAAGTTGAAACCATTGTTCAAGTGGCTCTTCTCTG 1675
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1633 CAATTTGACTACATATGACTCCAAAGAAGTTGAAACAATCGTTCAAGTGGCTCTTCTCTG 1692
Query 1676 CACGCAAGGCTCACCAGAAGATAGACCAGCGATGTCTGAAGTTGTTAAAATGCTTCAAGG 1735
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1693 CACACAAGGCTCACCAGAAGATAGACCAGCGATGTCTGAAGTGGTCAAAATGCTTCAAGG 1752
Query 1736 GACTGGTGGTTTGGCTGAGAAATGGACTGAATGGGAACAACTTGAAGAAGTTAGGAACAA 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 GACTGGTGGTTTGGCTGAGAAATGGACTGAATGGGAACAACTTGAAGAAGTTAGGAACAA 1812
Query 1796 AGAAGCATTGTTGCTTCCGACTTTACCAGCTACTTGGGATGAAGAAGAAACCACCGTTGA 1855
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1813 AGAAGCATTGTTGCTTCCGACTTTACCGGCTACTTGGGATGAAGAAGAAACCACCGTTGA 1872
Query 1856 TCAAGAATCTATCCGATTATCGGCAGCAAGATGAAGAAGAAATAGAGAGAGATA--TATC 1913
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||
Sbjct 1873 TCAAGAATCTATCCGATTATCGACAGCAAGATGAAGAAGAAACAGAGAGAGAAAGATATC 1932
Query 1914 TATGAAATCAAACTTGCGTTACAAAAGATAAACATAGAAAGTATTTTAAGAGGCTAATTG 1973
||||||| ||||||||| ||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 1933 TATGAAAACAAACTTGCATTACAGAAGATAAACTTAGAAAGTATTTTAAGCTGCTAATTG 1992
Query 1974 TTTTGAAACAGGTGGGAAAAACGAAGCAAA-ACACAACGTTGATTTGTGTAATAGATGAT 2032
| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1993 TATTGAACCAGGTGGGGAAAACGAAGCAAACACACAACGTTGATTTGTGTAATAGATGAT 2052
Query 2033 ATGATATACATAAC 2046
||||||||||||||
Sbjct 2053 ATGATATACATAAC 2066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102760515615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5