BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496560
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63730.1 | Symbols: ATARI14, ARI14 | IBR domain-containing p... 2340 0.0
AT5G63750.1 | Symbols: ATARI13, ARI13 | RING/U-box superfamily ... 542 5e-153
AT5G63760.1 | Symbols: ARI15, ATARI15 | RING/U-box superfamily ... 431 1e-119
> AT5G63730.1 | Symbols: ATARI14, ARI14 | IBR domain-containing
protein | chr5:25508100-25509706 REVERSE LENGTH=1521
Length=1521
Score = 2340 bits (1267), Expect = 0.0
Identities = 1438/1522 (94%), Gaps = 6/1522 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCACGATCGAGGGAAACCCTACTCTGTTCTAACGAGAAATGAAATTAGCGTAAAG 60
|||||| ||||| || ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAGTACGATGGACGGAGACCCTACTCTGTTCTAACGAGAAATGAAATTACCGTAAAG 60
Query 61 ATGAAGAAACAGATCAATGAAATCTCTGACATCTTCTTCATATCAAAATCCGATGCGACC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ATGAAGAAACAGATCAATGAAATCTCTGACATCTTCTTCATATCAAACTCCGATGCGACC 120
Query 121 GTACTTCTTATGTATCTCCGATGGGATTCGCTTCGTGTTTCAGAGCGTTTGGGTGAAAAT 180
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 121 GTACTTCTTATGTATCTCCGATGGGACTCGCTTCGTGTTTCAGAGCGTTTAGGTGAAAAC 180
Query 181 AAGGAGAAGTTATTGATGGATTCAGGTTTGGAATCAGTTGTGATTGATCCCAATCCAGAT 240
|||||||| ||||||||||||||||||||| ||||||| |||| ||||||| |||||||
Sbjct 181 AAGGAGAAATTATTGATGGATTCAGGTTTGAAATCAGTCATGATCGATCCCAGTCCAGAT 240
Query 241 TCATCTAGCGAGATTAGCTTGGAGACCGATGTTTATGAGTTTGCTGATGATGATGATTTG 300
|||||||||||||||||||||||||| |||||||||||||||| || |||| |||||||
Sbjct 241 TCATCTAGCGAGATTAGCTTGGAGACTGATGTTTATGAGTTTGATGGTGATAATGATTTA 300
Query 301 ATCTCCACGCCCTTTTGTTCTCACAAGTTCGACACAACATATTGGAGAGAGTATCTTGAG 360
||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 301 ATCTCCATGCCCTTTTGTTCTCACAAGTTCGACTCAAAATATTGGAGAGAGTATCTTGAG 360
Query 361 AAGAACTTT-TACTATGTGGAGAAAATCCAAACTGCAATCTCTTGTCCTGATCAAGATTG 419
||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 AAGAA-TTTCTACTATGTGGAGAAAATCCAAACCACAATCTCTTGTCCTGATCAAGATTG 419
Query 420 TCGATCTGCGGTTGGACCGGACACGATTGAGAAACTAACTGTACGTGATCAAGAGATGTA 479
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TCGATCTGCGGTTGGACCAGACACGATTGAGAAACTAACAGTACGTGATCAAGAGATGTA 479
Query 480 CGAGAGGTACATCTT-GAGATCTTACATTGAAGGAAACAAGGTATTGATGATCAAACAGT 538
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGAGAGGTACAT-TTGGAGATCTTACATTGAAGGAAACAAGGTATTGATGATCAAACAGT 538
Query 539 GTCCTGCTCGGGATTGCAATTACGTCATTGAGTTTCATCAGGAGAATGATGATGATGATG 598
||||||| ||| ||||| |||| || |||||||||||||| |||||||||||||||||||
Sbjct 539 GTCCTGCACGGAATTGCGATTATGTTATTGAGTTTCATCAAGAGAATGATGATGATGATG 598
Query 599 AGTATAGTTTAAACGTGGTGTGTCTCTGTGGTCATATCTTCTGTTGGAGATGCAGACTTG 658
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTATAGTTTAAACGTGGTGTGTATCTGTGGTCATATCTTCTGTTGGAGATGCAGACTTG 658
Query 659 AGTCACACAGACCAGTGACCTGCAACAAGGCCTCTGATTGGTTGTCTAGTGCCTCAAGGA 718
|||||||||||||||||| || |||||||||||||||||||||| ||||||| ||| ||
Sbjct 659 AGTCACACAGACCAGTGAGTTGTAACAAGGCCTCTGATTGGTTGTGTAGTGCCACAATGA 718
Query 719 AATTATCAGATGAATCATTTAGCCTTTGCT-CGACCAAAACCAAGACAGTGACTTGCCCT 777
|| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 719 AAATATCAGATGAATCATTTAGCCTTT-ATCCGACCAAAACCAAGACAGTGACTTGCCCT 777
Query 778 CATTGCCTTTGTTCTCTGGAGTCTGATACAAAAATGCCTCAGTTCTTGACTTGTGTCTGC 837
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 CATTGCCTCTGTTCTCTGGAGTCTGATACAAAAATGCCCCAGTTCTTGACTTGTGTCTGC 837
Query 838 AGGCTTCGTTTCTGTTCGAGATGTTTGCGGTCAGAGGAAGCCCACAAAATTGAAGCAGTA 897
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGGCTTCGTTTCTGTTCGAGGTGTTTGCGGTCAGAGGAAGCCCACAAAATTGAAGCAGTA 897
Query 898 GACTCTGGATTCTGTGTTAAAACAGAAGTGGGGATTTTATGTGAGGATCGCTGGAACGTG 957
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GACTCTGGATTCTGTATTAAAACAGAAGTGGGGATTTTATGTGAGGATCGCTGGAACGTG 957
Query 958 TGTCAGAATTTACTCGAGCAAGCCAAATCCGATCTAGAAGCTTTCGAGGAATCCAACATC 1017
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 958 TGTCAGAAGTTACTGGAGCAAGCCAAATCCGATCTAGAAGCTTTCGAGGAAACCAACATC 1017
Query 1018 AAGAATCCGAGTGACTTATTAAGGGAACAAGACATTATGATTATAAGAGAAGGGTTGATG 1077
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 AAGAAACCGAGTGACTTATTAAGGGAGCAAGACATTATGATTATAAGAGAAGGGTTGATG 1077
Query 1078 TTGATTGTTCAATGCAGACGAGTCCTTAAATGGTGTTGTGTGTATGACTATTTCTACACA 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 TTGATTGTTCAATGCAGACGAGTCCTTAAATGGTGTTGTGTGTATGACTATTTCCACACA 1137
Query 1138 GAGTATGAGAACTCGAAGGAGTATCTACGATACCTGCAAGGAAATGCGATCGCGGCTCTC 1197
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||
Sbjct 1138 GAGTATGAGAACTCGAAGGAGTATCTACGATACCTCCAAGGAAATGCAATCGCCACGCTC 1197
Query 1198 CAGAGTTACTCAAACACTTTACAAGAGCAAAAAGATATCGTCCTCACTGCAGCTACTTAT 1257
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1198 CAGAGTTACTCAAACACTTTACAAGAGCAAAAAGATATCGTCCTCGCTGCAGCTACTTAT 1257
Query 1258 GAAGAGTGTAGTTTCTTCAGACATACGATACCCACGGCGACAAGCAACATTGGTAACTAC 1317
|||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1258 GAAGAGTGTACTTTCTTCAGACATACGATACCTACTGCGACAAGCAACATTGGTAACTAC 1317
Query 1318 TTTTATGATTTCATCAAAACTTTGCAAGATGGTTTGGTCGATGTGAGGGTGAAGTCATAC 1377
||||||||||| || |||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 1318 TTTTATGATTTTATGAAAACTTTACAAGATGGTTTGGTCGATGTAAAGGTGAAGTCATAC 1377
Query 1378 AACGGTGGGGCGGGTCCTTTATGGTACTGTGATCGCTGCACCTATGCAAACACTTGGCAC 1437
||||| ||| | |||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 1378 AACGGCGGGACTGGTCCTTTCTGGTACTGTGATCGCTGCACGTATGCAAACACTTGGGAG 1437
Query 1438 GATAAGGAGTGTGAGATGTGCTATTATGATAGTGCCTCTCTTGTGGGAGAGTTAAGTGAT 1497
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1438 GATAATGAGTGTGAGATGTGCTATGATGATAGTGCCTCTCTTGTGGGAGAGATAAGTGAT 1497
Query 1498 TTGTCTCTTAACAAGGTTTCTT 1519
|||| ||||||||| |||||||
Sbjct 1498 TTGTTTCTTAACAAAGTTTCTT 1519
> AT5G63750.1 | Symbols: ATARI13, ARI13 | RING/U-box superfamily
protein | chr5:25512994-25514941 REVERSE LENGTH=1773
Length=1773
Score = 542 bits (293), Expect = 5e-153
Identities = 595/733 (81%), Gaps = 51/733 (7%)
Strand=Plus/Plus
Query 1 ATGGAGCACGATCGAG-GGAAACCCTACTCTGTTCTAACGAGAAATGAAATTAGCGTAAA 59
|||||| || |||||| || ||| |||||||||||||||||| || || ||| | |||
Sbjct 119 ATGGAGAACAATCGAGAGG-GACCATACTCTGTTCTAACGAGAGATCAACTTAAAGGAAA 177
Query 60 GATGAAGAAACAGATCAATGAAATCTCTGACATCTTCTTC-ATATCAAAATCCGATGCGA 118
|||||||| |||||| ||||||||||| |||||| || |||||||| |||||||||
Sbjct 178 TATGAAGAAGCAGATCGCCGAAATCTCTGAGATCTTC-TCGTTATCAAAACCCGATGCGA 236
Query 119 CCGTACTTCTTATGTATCTCCGATGGGATTCGCTTCG-TGTTTCAGAGCGTTTGGGTGAA 177
||||||| || |||| |||||||||||| || | | | ||||| ||| ||||| ||||
Sbjct 237 CCGTACTCCTCATGTTTCTCCGATGGGACTCTCAT-GAAGTTTCTGAGTTTTTGGTTGAA 295
Query 178 AATAA-GGAGAAGTTATTGAT-GGATTCAGGTTTGGAATCAGTTGTGA-TTGATCCCAAT 234
|| || | | ||| | ||| | ||| ||||||||| || |||| || | ||||||| |||
Sbjct 296 AACAACGAAAAAG-TCTTG-TCGGAATCAGGTTTGAAACCAGTGGT-AGTTGATCCGAAT 352
Query 235 CCAGA-TTCATCTAGCGAGA-TT-AGCTTG-GAGACCGATG-TTTATGAGTT-TGCTGAT 288
| ||| || || || ||| || |||| | || || |||| || || || ||||
Sbjct 353 CAAGACTT-ATATA---AGATTTCTTCTTGTGGGA--TTTGCTTTAAGACTTGTGATGAT 406
Query 289 GATGATGATTTGATCTCCACGCCCTTTTGTTCTCACAAGTTC-GACACAA-CATATTGGA 346
| |||| | || ||||||||||||||||| ||||||| |||| | || || | | |||||
Sbjct 407 GGTGATTACTTAATCTCCACGCCCTTTTGCTCTCACATGTTCTG-CA-AATCTTGTTGGA 464
Query 347 GAGAGTATCTTGAGAAGAACTTT-TACTAT-GTGGAGAAAATCCAAACTGC-AATCTCTT 403
|| |||||||||| ||||| ||| |||| | |||||||||| ||||||| | ||||||||
Sbjct 465 GAAAGTATCTTGAAAAGAA-TTTCTACT-TGGTGGAGAAAACCCAAACT-CGAATCTCTT 521
Query 404 GTCCTGATCAAGATTGTCGATCTGCGGTTGGACCGGACACGATTGAGAAACTAACTGTAC 463
||||| || || ||||| | | ||||||||||||||||||||| |||| ||||| |||
Sbjct 522 GTCCTCATGGAGCTTGTCAAGCCGCGGTTGGACCGGACACGATTCAGAAGCTAACCGTAT 581
Query 464 GTGATCAAGAGATGTACG-AGAGGTACA-TCTTGAGATCTTACATTGAAGGAAACAAGGT 521
|||||||||||||||||| || ||| | || |||||||||||||||| |||||||||||
Sbjct 582 GTGATCAAGAGATGTACGTGGA-GTATATTC-TGAGATCTTACATTGAGGGAAACAAGGT 639
Query 522 ATT-GATGATCAAACAGTGTCCTGCTCGGGATTGCAATTACGTCATTGAGTTTCATCAGG 580
||| || ||||||| | |||||||| | |||||||||||||||||||||||||||||||
Sbjct 640 ATTGGA-GATCAAATACTGTCCTGCACAGGATTGCAATTACGTCATTGAGTTTCATCAGA 698
Query 581 AG-A--ATGATGATGATGAT---G-AG--TATAGTTTAAACGTGGTGTGTCTCTGTGGTC 631
|| | |||||| || |||| | || ||| | || ||||||||||||||||||||||
Sbjct 699 AGAATCATGATGGTGCTGATCAGGAAGACTATGGCTTCAACGTGGTGTGTCTCTGTGGTC 758
Query 632 ATATCTTCTGTTGGAGATGCA-GACTTGAGTCACACAGACCAGTGACCTGCAACAAGGCC 690
|||||||||| |||||||||| | ||||||||||||| |||||||||||||||||| ||
Sbjct 759 ATATCTTCTGCTGGAGATGCATG-CTTGAGTCACACAAACCAGTGACCTGCAACAACGCG 817
Query 691 TCTGATTGGTTGT 703
|||||||||||||
Sbjct 818 TCTGATTGGTTGT 830
> AT5G63760.1 | Symbols: ARI15, ATARI15 | RING/U-box superfamily
protein | chr5:25515878-25517833 REVERSE LENGTH=1741
Length=1741
Score = 431 bits (233), Expect = 1e-119
Identities = 370/434 (85%), Gaps = 17/434 (4%)
Strand=Plus/Plus
Query 281 TTGCTGATGATGATGATTTGATCTCCACGCCCTTTTGTTCTCACAAGTTC-GACACAA-C 338
||| || ||||| |||||||||||||||||| |||||||||||||||||| | || || |
Sbjct 240 TTGTTGTTGATGGTGATTTGATCTCCACGCCTTTTTGTTCTCACAAGTTCTG-CA-AAGC 297
Query 339 ATATTGGAG-AGAGTATCTTGAGAAGAACTTT-TACTATGTGGAGAAAATCCAAACTGCA 396
| |||||| | |||||||| |||| || ||| | || ||||||||||| ||| ||||||
Sbjct 298 TTGTTGGAGCA-AGTATCTTAAGAA-AAATTTCTTCTCTGTGGAGAAAAACCACACTGCA 355
Query 397 ATCTCTTGTCCTGATCAAGATTGTCGATCTGCGGTTGGACCGGACACGATTGAGAAACTA 456
|||||||||||||||| |||||||||| |||| ||||||||||| ||| ||||||| |||
Sbjct 356 ATCTCTTGTCCTGATCGAGATTGTCGAGCTGCTGTTGGACCGGAGACGGTTGAGAAGCTA 415
Query 457 ACTGTACGTGATCAAGAGATGTACGAGAGGTACA-TCTTGAGATCTTACATTGAAGGAA- 514
|| ||||||||||||| |||||||||| ||| | || ||| ||||||| || || ||
Sbjct 416 ACCGTACGTGATCAAGCGATGTACGAGTTGTATATTC-TGAAATCTTACCGTG-AGAAAT 473
Query 515 ACAAGGTATTGATGATCAAACAGTGTCCTGCTCGGGATTGCAATTACGTCATTGAGTTTC 574
|| || || || | |||||| ||||||||| |||| |||||||||||| ||||||||||
Sbjct 474 ACCTGGGATGGAAGCTCAAACTGTGTCCTGCACGGGGTTGCAATTACGTGATTGAGTTTC 533
Query 575 ATCAGGAGAATGATGATGATGATGAGTATAGTTTAAACGTGGTGTGTCTCTGTGGTCATA 634
||| || || | ||| ||||| ||| |||| |||||| | |||||||||||||||||||
Sbjct 534 ATCTGG-CAA-G-TGAAGATGAAGAGCATAGCTTAAACATTGTGTGTCTCTGTGGTCATA 590
Query 635 TCTTCTGTTGGAGATGCA-GACTTGAGTCACACAGACCAGTGACCTGCAACAAGGCCTCT 693
|||||||||||||||||| | |||||||||||||||||||||||||||||||| || |||
Sbjct 591 TCTTCTGTTGGAGATGCATG-CTTGAGTCACACAGACCAGTGACCTGCAACAACGCTTCT 649
Query 694 GATTGGTTGTCTAG 707
||||||||||||||
Sbjct 650 GATTGGTTGTCTAG 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74949413685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5