BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496561
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63750.1 | Symbols: ATARI13, ARI13 | RING/U-box superfamily ... 1371 0.0
AT5G63760.1 | Symbols: ARI15, ATARI15 | RING/U-box superfamily ... 233 3e-60
> AT5G63750.1 | Symbols: ATARI13, ARI13 | RING/U-box superfamily
protein | chr5:25512994-25514941 REVERSE LENGTH=1773
Length=1773
Score = 1371 bits (742), Expect = 0.0
Identities = 998/1115 (90%), Gaps = 44/1115 (4%)
Strand=Plus/Plus
Query 1 CCTAAATAGTTGAAACAGAAATCATCTAGAGACGACGATCAAGA-AAACACGAAGACCGA 59
|||||| |||||||||||||||||||| ||| |||||| |||| ||| || |||| |||
Sbjct 9 CCTAAAAAGTTGAAACAGAAATCATCT--AGA-GACGATTAAGAGAAA-ACTAAGAACGA 64
Query 60 TAACTCTCACCTTCGATTCTTTTTGTTGATTGAGGCACAAGCTACCGGTAAGCACACAAT 119
|||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 65 TAACTCTCGCCTTCGATTCTTTTTGTTGATTGAGGCGCAAGCTACC--T--GCACACAAT 120
Query 120 GGAGAACGATCGAGAGGGACCATACTCTGTTCTAACGAGAGATGAACTTAGAGAAAAGAT 179
||||||| ||||||||||||||||||||||||||||||||||| |||||| || ||| ||
Sbjct 121 GGAGAACAATCGAGAGGGACCATACTCTGTTCTAACGAGAGATCAACTTAAAGGAAATAT 180
Query 180 GGAGAAACAGATCGCTGAAATCTCTGAGATATTCTCGTTATCAAAATCCGATGCGACCGT 239
| |||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 181 GAAGAAGCAGATCGCCGAAATCTCTGAGATCTTCTCGTTATCAAAACCCGATGCGACCGT 240
Query 240 ACTCCTCATGTTTCTCCGATGGGACTCTCATCGA-GTTTCTGA-TTGTTTGGTTGAAAAC 297
||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||
Sbjct 241 ACTCCTCATGTTTCTCCGATGGGACTCTCAT-GAAGTTTCTGAGTT-TTTGGTTGAAAAC 298
Query 298 AAGGAGAAAGTCTTATCGGAGTCCGGTTTGAAACCAGTTGTAGCTAATCCGAATCAAGAA 357
|| || |||||||| ||||| || |||||||||||||| |||| | |||||||||||||
Sbjct 299 AACGAAAAAGTCTTGTCGGAATCAGGTTTGAAACCAGTGGTAGTTGATCCGAATCAAGAC 358
Query 358 TTATCTAATAT--CT-CTTGTGGGATTTGCTTTAAGACTTGTGATGATGATGATTACTTA 414
|||| ||| || || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 TTATATAAGATTTCTTCTTGTGGGATTTGCTTTAAGACTTGTGATGATGGTGATTACTTA 418
Query 415 ATCTCCACGCCCTATTGTTCTCACATGTTCTGCAAATCTTGTTGGAGAAAGTATCTTGGA 474
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 ATCTCCACGCCCTTTTGCTCTCACATGTTCTGCAAATCTTGTTGGAGAAAGTATCTTGAA 478
Query 475 AAGAATTTCTACTTGGTGGAGAAAAACCAAACTAGAATTTCTTGTCCTCATCCAGCTTGT 534
||||||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||
Sbjct 479 AAGAATTTCTACTTGGTGGAGAAAACCCAAACTCGAATCTCTTGTCCTCATGGAGCTTGT 538
Query 535 CAAGCTGCGGTTGGACCGGACACGATTCAGAAGCTAACCGTACGTGATCAAGAGATGTAC 594
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 CAAGCCGCGGTTGGACCGGACACGATTCAGAAGCTAACCGTATGTGATCAAGAGATGTAC 598
Query 595 GTGGAGTATGTTCTGAGGTCTTACCTTGAGG---------TATTAGAGATCAAAGAGTGT 645
||||||||| ||||||| |||||| |||||| |||| ||||||||| | |||
Sbjct 599 GTGGAGTATATTCTGAGATCTTACATTGAGGGAAACAAGGTATTGGAGATCAAATACTGT 658
Query 646 CCTGCAC-GTGATTGCAATTACGTCATTGAGTTTCATCAGAAGAATCATGATGGTGATGA 704
||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 659 CCTGCACAG-GATTGCAATTACGTCATTGAGTTTCATCAGAAGAATCATGATGGTGCTGA 717
Query 705 ---GGAAGACTATAGCTTAAACGTGGTGTGTCTCTGTGGTCATATCTTCTGCTGGAGATG 761
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCAGGAAGACTATGGCTTCAACGTGGTGTGTCTCTGTGGTCATATCTTCTGCTGGAGATG 777
Query 762 CATGCTTGAGTCACACAAACCAGTGACCTGCAACAATGCGTCTGATTGGTTGTTTAGAGA 821
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 778 CATGCTTGAGTCACACAAACCAGTGACCTGCAACAACGCGTCTGATTGGTTGTTTCGAGA 837
Query 822 CCTAAAGAGCTTATCGAAGGTATCAGGTAAAAAACCATTGAGCCTCTCCTCGATCAAAAC 881
|||||| ||||||||||||| ||||||| |||| |||||||||||||||||| || ||||
Sbjct 838 CCTAAATAGCTTATCGAAGGAATCAGGTGAAAAGCCATTGAGCCTCTCCTCGTTCGAAAC 897
Query 882 CACCCGCCAAAAGACTTGCTCTCTC-CCGTTGATCAAAGCCACCACGAACACTT-GCCCT 939
|| | ||||||||| | ||||| || | |||||||||||||| ||| | || |||||
Sbjct 898 CAGA-G--AAAAGACTTACCCTCTCTCC-TCGATCAAAGCCACCAAGAA-AGTTTGCCCT 952
Query 940 CATTGTTTTCGTCGTGTGGACCTGGGTACTAAACAATACCTCCGGTTCTTGACTTGTGCC 999
|||||| |||||| || ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 953 CATTGTCTTCGTCCTGCGGATCTTGGTACTAAACAATACCTCCGGTTCTTGACTTGTGCC 1012
Query 1000 TGCGGGTACGGTCGTTTCTGCTGGAAGTGTATGCAGTCAGAGGAAGACCACAAAACGGAA 1059
||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1013 TGCA---ACGGTCGTTTCTGCTGGAAGTGTATGCAGCCAGAGGAAGCCCACAAAACGGAA 1069
Query 1060 TCAGGATGGTATAAACTCTGCAGTAATGTACTCGA 1094
||||||| |||||| |||| ||||||| ||||
Sbjct 1070 TCAGGATTCTATAAATTCTG---TAATGTA-TCGA 1100
Score = 791 bits (428), Expect = 0.0
Identities = 533/585 (91%), Gaps = 2/585 (0%)
Strand=Plus/Plus
Query 1089 ACTCGAGAGAAGAGCAGAAGTGGAGAATTCGTGCATGGAACACTGGAAGGCGAGTAAAGT 1148
||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| | ||
Sbjct 1129 ACTCGAGGGAAGAGCAGAACCGGAGAATTCGTGCGTGGGACTCTGGAAGGCGAGTGAGGT 1188
Query 1149 TTCAATGAAGCAAGCTATATCCGATCTACAAGCTTTCGAGGAATCCAACATGGAGAATCC 1208
|||| |||||||||||| ||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 1189 TTCACTGAAGCAAGCTAAATCTGATCTACAAGCTTTTGAGGAGTCCAACATCAAGAATCC 1248
Query 1209 AGGTTACTTGAGCGAGAAAGACATGACAATTATAAGAAAAGGATTGATGCTGATTGTTCA 1268
| || |||||| |||||||||| | || ||||||||||||||||||||||||||||| ||
Sbjct 1249 AAGTGACTTGACCGAGAAAGACTTTACCATTATAAGAAAAGGATTGATGCTGATTGTCCA 1308
Query 1269 ATGCAGACAAGTTCTTAAATGGAGCTGCGTGTACGACTACTTCCACACAGAGTATGAGAT 1328
|||||| ||||| |||||||||||||| || || || ||||| || |||||||||||||
Sbjct 1309 ATGCAGGCAAGTCCTTAAATGGAGCTGTGTATATGATTACTTACATGCAGAGTATGAGAT 1368
Query 1329 GTCGAAGAGGGAATACCTGCGATTCCTGCAAGCAAACGCGACCTCACTTGTGGAGGGTTA 1388
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 1369 GTCGAAGAGGGAGTACCTGCGATTCCTGCAAGCAGACGCGACCTCACTGGTGGAGAGTTT 1428
Query 1389 CTCAAAGACTCTAAATGAGGAGATAGAAAGAGCCTCGTCAGCTACTTCTGAAAACTTTTG 1448
||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 1429 CTCAAAGACGCTAAATGAGGAGATAGGAAGAGCCTCGTCAGCTACTTATGAAAATTTTTG 1488
Query 1449 TTGCGTCAAGCATAAGGTAACGATTGAGACTATCAACATTGGGAACTACTTTTATCATTT 1508
||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||
Sbjct 1489 TTGCGTCAAGCATAAGGTAACCATTGAGACAAGCAACATTGGGAACTACTTTTATCATTT 1548
Query 1509 CATCAAGACTTTACGAGAAGGTTTGGACGACGTGAAGGTGAAGTCCTAC-ACCGACTATG 1567
|||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||
Sbjct 1549 CATCAAGACTTTACAAGAAGGTTTGGATGACGTGAAGGTGAAGTCCTACGAC-GACTATG 1607
Query 1568 GTGGTCTTTTTTGGCTCTGTGATCGCTGCACATTTGGAAACACTTGGTTCCATAAGGAGT 1627
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1608 GTGGTCTTTTTTGGCTCTGTGATCGCTGCACATATGGAAACACTTGGTTCCATAAAGAGT 1667
Query 1628 GTACGATGTGCAGTGATGATATTGCAGCTCGTGTGGAGCTAAGTG 1672
|| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1668 GTTTGATGTGCAGTGATGATATTGCAGCTCGTGTGGATCTAAGTG 1712
> AT5G63760.1 | Symbols: ARI15, ATARI15 | RING/U-box superfamily
protein | chr5:25515878-25517833 REVERSE LENGTH=1741
Length=1741
Score = 233 bits (126), Expect = 3e-60
Identities = 424/560 (76%), Gaps = 52/560 (9%)
Strand=Plus/Plus
Query 1099 AGAGCAGAAGTGGAGAATTCGTGCATGGAACACTGGAAGGCGAGTAAAGTTTCAA--TGA 1156
|||||| || || || |||||| |||| | |||||| |||||| ||| | || ||
Sbjct 917 AGAGCAAAACCGGGGATTTCGTGTTTGGATCTCTGGAATGCGAGTCAAG--TGAATCTGG 974
Query 1157 AGCAA-GCTATATCCGATCTACAAGCTTTCGAGGAATCCA-ACATGGAGAATCC-AGGTT 1213
| || |||| || ||| ||| |||||||||||||||||| | || |||| || | ||
Sbjct 975 TG-AACGCTAAATACGAGCTAGAAGCTTTCGAGGAATCCATA-ATCAAGAAACCTA-GTG 1031
Query 1214 ACTTG-AGCGAGAAAGACATGACAATTA-TAAGAAAAGGATTGATGCTGATTGTTCAATG 1271
||||| || ||| ||||| | | | || |||| ||||| ||||||| |||||||| ||
Sbjct 1032 ACTTGAAG-GAGCAAGACGTTA-AGGTACTAAGGGAAGGACTGATGCTCATTGTTCAGTG 1089
Query 1272 CAGACAAGTT-CTTAAATGGAGCTGCGTGTACGACTACT-TCCACACAGAGTATGAGATG 1329
||||| |||| || ||||||||||| | ||||||||| | |||||||||||||||| |||
Sbjct 1090 CAGAC-AGTTCCTCAAATGGAGCTGTGCGTACGACTA-TATCCACACAGAGTATGATATG 1147
Query 1330 TCGAAGAGGGAATACCTGCGATTCCTGCAAGC-AAACGCGACCT--CACTTGTGGAGGGT 1386
||||||| || |||||||||||||| ||| | ||||||| || || |||| | ||
Sbjct 1148 GCGAAGAGAGAGTACCTGCGATTCCTCCAA-CAAAACGCG-TCTGGCA-TTGTCCATAGT 1204
Query 1387 TACTCAAAGACTCTAAATGAGGAGATAGAAAGAGCCTCGTCAGCTACTTCTGAAAACTTT 1446
| |||| ||| | |||| ||||| | | | | || | | || | || || |
Sbjct 1205 TTCTCACAGAGTATAAAGGAGGA-A-ACAGA-AG-C-C-AAAG--A--GCT---TAC--T 1249
Query 1447 TGTTGCGTCAAGCATAAGGTAACGATTGAGACTATCAACATTGGGAACTACTTTTATCAT 1506
|| | || |||| | | | || ||||| | |||||||||||||| ||||||||||
Sbjct 1250 TG-CG-GT-AAGC-T-A--T--TGAGCGAGACAACCAACATTGGGAACTTCTTTTATCAT 1300
Query 1507 TTCATCAAGACTTTACGAGAAGGTTTGGACGACGTGA-AGGTGAAGTCCTAC-ACCGACT 1564
||||||||||||||||||||||||||| ||| || | ||| | |||| ||| || |||
Sbjct 1301 TTCATCAAGACTTTACGAGAAGGTTTGCCCGAGGT-ACAGGCGGAGTCGTACGACA-ACT 1358
Query 1565 ATGGTGGTCTTTTTTGGCTCTGTGATCGCTGCACATTTGGAAACACTTGGTTCCATAAGG 1624
||||||||| || ||| | || ||||||||||||| ||||||| |||||||||| | ||
Sbjct 1359 ATGGTGGTCCTTACTGGTTGTGCGATCGCTGCACATATGGAAACTCTTGGTTCCAGAGGG 1418
Query 1625 AGTGTACGATGTGCAGTGAT 1644
|||| ||||||| |||||
Sbjct 1419 CCTGTAAGATGTGCTGTGAT 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82630097070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5