BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496562
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63760.1 | Symbols: ARI15, ATARI15 | RING/U-box superfamily ... 990 0.0
AT5G63730.1 | Symbols: ATARI14, ARI14 | IBR domain-containing p... 496 4e-139
AT5G63750.1 | Symbols: ATARI13, ARI13 | RING/U-box superfamily ... 185 9e-46
> AT5G63760.1 | Symbols: ARI15, ATARI15 | RING/U-box superfamily
protein | chr5:25515878-25517833 REVERSE LENGTH=1741
Length=1741
Score = 990 bits (536), Expect = 0.0
Identities = 753/852 (88%), Gaps = 38/852 (4%)
Strand=Plus/Plus
Query 1 TTTACCTTCGGAGTCAATCTTGATTCCGATGGGACTCGAATCGGGTTTTGGAGCGTTTGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 TTTACCTTCGGAGTCAATCTTGATTCCGATGGGACTCGAATCGGGTTTTGGAGCGTTTGG 107
Query 61 GTGAAGACGCGGAGAAACTAATGACTGAATCAGGTTTGAAATCAGTTGTAATTGATTCGA 120
|||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 108 GTGAAGACATGGAGAAACTAATGACTGAATCAGGTTTGAAACCAGTTGTTATTGATTCGA 167
Query 121 ATCAAGATTTA--TC-TG---A-TGT---ATCT--TGTGGGATT--TGCT--C---TAAG 161
||||||||||| || || | ||| |||| | | ||| || | | || |
Sbjct 168 ATCAAGATTTATCTCGTGTATATTGTGGGATCTGCTCTAATATTGGTGATGACGATTATG 227
Query 162 AT--TG--G-TGATG--G-TGAT-G-G-TTTAATCTCCACGGCTTGTTGTTCTCACAAGT 210
|| || | || || | |||| | | ||| ||||||||| ||| ||||||||||||||
Sbjct 228 ATGGTGATGCTGTTGTTGTTGATGGTGATTTGATCTCCACGCCTTTTTGTTCTCACAAGT 287
Query 211 TGTGCAACA-CTTGTTGGAGCGAGTATCTTGAGAAGAATTTCTTCTCTGTGGAGAAAAAC 269
| ||||| | ||||||||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 288 TCTGCAA-AGCTTGTTGGAGCAAGTATCTTAAGAAAAATTTCTTCTCTGTGGAGAAAAAC 346
Query 270 CAAACTGCAATCTCTTGTCCTGATCAATCTTGTCGAGCTGCTGTTGGACCGGACACGATT 329
|| |||||||||||||||||||||| | |||||||||||||||||||||||| ||| ||
Sbjct 347 CACACTGCAATCTCTTGTCCTGATCGAGATTGTCGAGCTGCTGTTGGACCGGAGACGGTT 406
Query 330 GAGAAACTCACCGTACGTGATCAAGAGATGTACGAGAAGTATGTTCTGAAATCTTACCGT 389
||||| || |||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 407 GAGAAGCTAACCGTACGTGATCAAGCGATGTACGAGTTGTATATTCTGAAATCTTACCGT 466
Query 390 GAGAGATGTCTGGGATGGAAGATCAAACAGTGTCCTGCTCCGGGTTGCAATTACAACATT 449
|||| || |||||||||||| |||||| ||||||||| | ||||||||||||| |||
Sbjct 467 GAGAAATACCTGGGATGGAAGCTCAAACTGTGTCCTGCACGGGGTTGCAATTACGTGATT 526
Query 450 GAGTTTCATCTGGCGAGTGAAGATGAAGAGCATAGCTTAAACATTGTGTGTCTCTGTGGT 509
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GAGTTTCATCTGGCAAGTGAAGATGAAGAGCATAGCTTAAACATTGTGTGTCTCTGTGGT 586
Query 510 CATATCTTCTGTTGGAGATGCATGCTTGAGTCACACAGACCAGTGACCTGCAACAACGCT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CATATCTTCTGTTGGAGATGCATGCTTGAGTCACACAGACCAGTGACCTGCAACAACGCT 646
Query 570 TCTGATTGGTTGTCTAGAGACCTGAAGAAATTGATAGGAGAAGTAGACAAGCCATCGACC 629
||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 647 TCTGATTGGTTGTCTAGAGACTTGGAGAAATTGATAGAAGAAGTAGACAAGCCATCGACC 706
Query 630 CTCTCCTGGATTGAAACCAATACCAAGCCTTGCCCTCATTGCTTTATTCCTGTGGAGCTT 689
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 707 GTCTCCTGGATTGATGCCAATACCAAGCCTTGCCCTCATTGCTTTATTCCTGTGGAGATT 766
Query 690 GATGATGTAC-ACCAATGGAACCAGTTCTTGACTTGTGCCTGCAGTGGGCGTTTCTGTTG 748
|||| || || |||| ||| ||||||||||||||||| |||||| || |||||||||||
Sbjct 767 GATGGTGAACGACCA-TGGGCCCAGTTCTTGACTTGTGTCTGCAGCGGTCGTTTCTGTTG 825
Query 749 GAAGTGTTTTCAGTCACCGGAAGCTCACGGAATCT-ATGGATCCTGTTTTGCACCGGAG- 806
||||||||||| |||||||||| ||||||||| || | ||||||||||| ||||||| |
Sbjct 826 GAAGTGTTTTCGGTCACCGGAAACTCACGGAACCTCA-GGATCCTGTTTGGCACCGGCGC 884
Query 807 GATTTGAGCAAT 818
| || |||||||
Sbjct 885 G-TTCGAGCAAT 895
Score = 819 bits (443), Expect = 0.0
Identities = 521/558 (93%), Gaps = 8/558 (1%)
Strand=Plus/Plus
Query 819 ATTTCGTGTTTGGATCTCTGGAAGGCAAGTCAGGTTTCA-CTGGAGCAA-GCTAAATCCG 876
||||||||||||||||||||||| || ||||| | | | |||| | || ||||||| ||
Sbjct 932 ATTTCGTGTTTGGATCTCTGGAATGCGAGTCAAG-TGAATCTGGTG-AACGCTAAATACG 989
Query 877 AGCTAGAAGCTTTCGAGGAATCCATAATCAAGAAACCTAGTGACTTGAAGGAGCAAGACG 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 AGCTAGAAGCTTTCGAGGAATCCATAATCAAGAAACCTAGTGACTTGAAGGAGCAAGACG 1049
Query 937 TTAAAGTACTAAGAGAAGGACTGATGCTCGTTGTTCAGTGCAGACAGTTCCTCAAATGGA 996
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1050 TTAAGGTACTAAGGGAAGGACTGATGCTCATTGTTCAGTGCAGACAGTTCCTCAAATGGA 1109
Query 997 GCTGTGTGTACGACTATCTCCACACAGAGTATGATATGGCGAAGAGAGAGTACCTGCGAT 1056
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GCTGTGCGTACGACTATATCCACACAGAGTATGATATGGCGAAGAGAGAGTACCTGCGAT 1169
Query 1057 TCCTCCAAGAAAACGCGTCTGCCCTTGTCCACAGTTTCTCACAGGGTATAAAGGAGGAAA 1116
|||||||| |||||||||||| | ||||||| |||||||||||| |||||||||||||||
Sbjct 1170 TCCTCCAACAAAACGCGTCTGGCATTGTCCATAGTTTCTCACAGAGTATAAAGGAGGAAA 1229
Query 1117 CAGAAGCCAAAGAGCTTACTCGCGGTAAGCTATTGAGTGAGACAACCAACATTGGGAACT 1176
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1230 CAGAAGCCAAAGAGCTTACTTGCGGTAAGCTATTGAGCGAGACAACCAACATTGGGAACT 1289
Query 1177 ACTTTTATCATTTCATCAAGACTTTACGAGAAGGTTTAGCC-GAGGTGA-AGGCGAAGTC 1234
|||||||||||||||||||||||||||||||||||| ||| ||||| | ||||| ||||
Sbjct 1290 TCTTTTATCATTTCATCAAGACTTTACGAGAAGGTTT-GCCCGAGGT-ACAGGCGGAGTC 1347
Query 1235 GTACGACAACTATGGTGGTCCTTATTGGTTGTGCGATCGCTGCACATATGGAAACTCTTG 1294
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1348 GTACGACAACTATGGTGGTCCTTACTGGTTGTGCGATCGCTGCACATATGGAAACTCTTG 1407
Query 1295 GTTCGAGAGGGCCTGTAAGATGTGCTGTGATCCTACTGCATCCAATACGGACGAGCTAAG 1354
|||| |||||||||||||||||||||||||||||||||| || || | ||||||||||||
Sbjct 1408 GTTCCAGAGGGCCTGTAAGATGTGCTGTGATCCTACTGCGTCTAAGATGGACGAGCTAAG 1467
Query 1355 TGATTGATCTCTTAGCTA 1372
||||||||| |||| |||
Sbjct 1468 TGATTGATCGCTTAACTA 1485
> AT5G63730.1 | Symbols: ATARI14, ARI14 | IBR domain-containing
protein | chr5:25508100-25509706 REVERSE LENGTH=1521
Length=1521
Score = 496 bits (268), Expect = 4e-139
Identities = 835/1094 (76%), Gaps = 98/1094 (9%)
Strand=Plus/Plus
Query 25 TCCGATGGGACTCGAATCGGGTTTTGGAGCGTTTGGGTGAAGACGCGGAGAAACTAATGA 84
|||||||||||||| ||| |||| |||||||| |||||| || ||||||| || |||
Sbjct 137 TCCGATGGGACTCGCTTCGTGTTTCAGAGCGTTTAGGTGAAAACAAGGAGAAATTATTGA 196
Query 85 CT-GAATCAGGTTTGAAATCAGTTGTAATTGATTCGAATCAAGATTTATCT-----GATG 138
| || ||||||||||||||||| | || ||| | | || ||||| |||| |||
Sbjct 197 -TGGATTCAGGTTTGAAATCAGTCATGATCGATCCCAGTCCAGATTCATCTAGCGAGAT- 254
Query 139 TATCTTGTGGGA-T-TTGCTCTA--AGATTGGTGATGGTGATGGTTTAATCTCCACG-GC 193
|| |||| | || | || | || || ||| || || | ||| ||||||||||| | |
Sbjct 255 TAGCTTG-GAGACTGATG-TTTATGAGTTTGATGGTGATAATGATTTAATCTCCATGCCC 312
Query 194 TTGTTGTTCTCACAAGTT-G--TGCAACACTTGTTGGAGCGAGTATCTTGAGAAGAATTT 250
|| ||||||||||||||| | | ||| | | |||||| ||||||||||||||||||||
Sbjct 313 TT-TTGTTCTCACAAGTTCGACT-CAA-A-ATATTGGAGAGAGTATCTTGAGAAGAATTT 368
Query 251 CTTCTCTGTGGAGAAAAACCAAACTGCAATCTCTTGTCCTGATCAATCTTGTCGAGCTGC 310
|| || ||||||||||| |||||| |||||||||||||||||||| ||||||| ||||
Sbjct 369 CTACTATGTGGAGAAAATCCAAACCACAATCTCTTGTCCTGATCAAGATTGTCGATCTGC 428
Query 311 TGTTGGACCGGACACGATTGAGAAACTCACCGTACGTGATCAAGAGATGTACGAGAAGTA 370
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 429 GGTTGGACCAGACACGATTGAGAAACTAACAGTACGTGATCAAGAGATGTACGAGAGGTA 488
Query 371 TGTTCT-GAAATCTTACCGTG-AGAGATGTC-TGGGATGGAAGATCAAACAGTGTCCTGC 427
|| | || ||||||| || || || | || || || ||||||||||||||||||
Sbjct 489 CATT-TGGAGATCTTACATTGAAG-GA-AACAAGGTATTGATGATCAAACAGTGTCCTGC 545
Query 428 TCCGG-GTTGCAATTACAACATTGAGTTTCATCTGGCG-A-G-TGAAGATGAAGAGCATA 483
||| |||| |||| ||||||||||||| | | | | ||| ||||| ||| |||
Sbjct 546 -ACGGAATTGCGATTATGTTATTGAGTTTCATCAAGAGAATGATGATGATGATGAGTATA 604
Query 484 GCTTAAACATTGTGTGTCTCTGTGGTCATATCTTCTGTTGGAGATGCATG-CTTGAGTCA 542
| |||||| | |||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 605 GTTTAAACGTGGTGTGTATCTGTGGTCATATCTTCTGTTGGAGATGCA-GACTTGAGTCA 663
Query 543 CACAGACCAGTGACCTGCAACAACGCTTCTGATTGGTTGTCTAGAGACCTGAA-GAAATT 601
||||||||||||| || ||||| || ||||||||||||| ||| | || || |||| |
Sbjct 664 CACAGACCAGTGAGTTGTAACAAGGCCTCTGATTGGTTGTGTAGTG-CCACAATGAAAAT 722
Query 602 GATAGGAGAAGTAGACAAGCCATCGACCCTCT--CCTGGATTGAAACCAATACCAA-GCC 658
|| ||| | || | | || | ||| | || | | ||||||| || | | |
Sbjct 723 -ATC--AGA--T-GA-AT-C-ATTTAGCCTTTATCC-G-ACCAAAACCAAGAC-AGTGAC 770
Query 659 TTGCCCTCATTGCTT-TATTCCTGTGGAGCTTGATGATGTACACCAATGGAACCAGTTCT 717
||||||||||||| | | ||| | ||||| | |||| ||| |||| ||||||||
Sbjct 771 TTGCCCTCATTGCCTCTGTTC-TCTGGAG-TC--TGAT--ACAAAAATGCC-CCAGTTCT 823
Query 718 TGACTTGTGCCTGCAGTGGG-CGTTTCTGTTGGAAGTGTTTTCAGTCACCGGAAGCTCAC 776
||||||||| |||||| | |||||||||| || |||||| | |||| |||||| |||
Sbjct 824 TGACTTGTGTCTGCAG-GCTTCGTTTCTGTTCGAGGTGTTTGCGGTCAGAGGAAGCCCAC 882
Query 777 GGAAT-----C--TA---T--GGATCCTGTTTTGCACCGGAGGATTTGAGCAATATTTCG 824
||| | || | |||| |||| || | | || | | | | | | |||
Sbjct 883 AAAATTGAAGCAGTAGACTCTGGATTCTGTATTAAAACAGAAG-TGGG-G-A-T-TTTA- 936
Query 825 TGTTTGGATCTCTGGAAGGCAAGTCAG--GTTTCACTGGAGCAAGCTAAATCCGAGCTAG 882
||| ||||| |||||| | ||||| ||| |||||||||||| |||||||| ||||
Sbjct 937 TGTGAGGATCGCTGGAACGTGTGTCAGAAGTT--ACTGGAGCAAGCCAAATCCGATCTAG 994
Query 883 AAGCTTTCGAGGAATCCATA-ATCAAGAAACCTAGTGACTTG--AAGG-AGCAAGACGTT 938
|||||||||||||| ||| | ||||||||||| |||||||| |||| |||||||| ||
Sbjct 995 AAGCTTTCGAGGAAACCA-ACATCAAGAAACCGAGTGACTTATTAAGGGAGCAAGACATT 1053
Query 939 AA-AGTACTAAGAGAAGGACTGATGCTCG-TTGTTCAGTGCAGAC-AGTTCCTCAAATGG 995
| | || |||||||||| ||||| | | ||||||| ||||||| ||| ||| ||||||
Sbjct 1054 ATGATTA-TAAGAGAAGGGTTGATGTT-GATTGTTCAATGCAGACGAGT-CCTTAAATGG 1110
Query 996 AGCTGTGTGTACGACTATCTCCACACAGAGTATGATATGGCGAAGAGAGAGTACCTGCGA 1055
| |||||||| |||||| |||||||||||||||| | ||||| ||| || || |||
Sbjct 1111 TGTTGTGTGTATGACTATTTCCACACAGAGTATGAGAACTCGAAG-GAG--TATCTACGA 1167
Query 1056 TTCCTCCAAGAAAA 1069
| |||||||| |||
Sbjct 1168 TACCTCCAAGGAAA 1181
> AT5G63750.1 | Symbols: ATARI13, ARI13 | RING/U-box superfamily
protein | chr5:25512994-25514941 REVERSE LENGTH=1773
Length=1773
Score = 185 bits (100), Expect = 9e-46
Identities = 130/145 (90%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 1154 TGAGACAACCAACATTGGGAACTACTTTTATCATTTCATCAAGACTTTACGAGAAGGTTT 1213
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1513 TGAGACAAGCAACATTGGGAACTACTTTTATCATTTCATCAAGACTTTACAAGAAGGTTT 1572
Query 1214 AGCCGAGGTGAAGGCGAAGTCGTACGACAACTATGGTGGTCCTTATTGGTTGTGCGATCG 1273
| || ||||||| |||||| |||||| |||||||||||| || |||| | || |||||
Sbjct 1573 GGATGACGTGAAGGTGAAGTCCTACGACGACTATGGTGGTCTTTTTTGGCTCTGTGATCG 1632
Query 1274 CTGCACATATGGAAACTCTTGGTTC 1298
|||||||||||||||| ||||||||
Sbjct 1633 CTGCACATATGGAAACACTTGGTTC 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5