BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496566
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63780.1 | Symbols: SHA1 | RING/FYVE/PHD zinc finger superfa... 1964 0.0
AT5G08750.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 549 3e-155
AT5G63790.1 | Symbols: ANAC102, NAC102 | NAC domain containing ... 147 4e-34
> AT5G63780.1 | Symbols: SHA1 | RING/FYVE/PHD zinc finger superfamily
protein | chr5:25523845-25526593 FORWARD LENGTH=1691
Length=1691
Score = 1964 bits (1063), Expect = 0.0
Identities = 1208/1274 (95%), Gaps = 26/1274 (2%)
Strand=Plus/Plus
Query 367 AGTTTTCTTTTTCGGGCTTGATGGGTAAAGAGAATCAGTTGGAGACAACAAATTGTGGAG 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGTTTTCTTTTTCGGGCTTGATGGGTAAAGAGAATCAGTTGGAGACAACAAATTGTGGAG 480
Query 427 TCAATGATCACGATTGTCCACCCGTCAAGAACGAAGAACTAGCAGCTGAGGCGCGTTATA 486
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 TCAATGATCACGATTGTCCACCCGTCAAGAACGAGGAACTAGCAGCTGAGGCGCGTTATA 540
Query 487 GTACAGACAGTGACTCGGGTTTACCAACCTGTCGTGTATGCCATTCTGCAGAATCTGACA 546
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 541 GTACAGACAGTGACTCGGGTTTGCCAACCTGTCGTGTATGCCATTCTGCAGAATCCGACA 600
Query 547 GACGAGGAGATACTGCCTTGGGGTTTTTGGGGATTACTCCTCCGGTTCCAGAAGCTCGTA 606
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 GACGAGGAGATACCGCCTTGGGGTTTTTGGGGATTACCCCTCCGGTTCCAGAAGCTCGTA 660
Query 607 AAAGCAATACAGACGAAAACGCTGATGATGTCAGCAAAGCTACAGAGTCTGAGCTGAAGA 666
|||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAAGCAATGTAGATGGAACCGCTGATGATGTCAGCAAAGCTACAGAGTCTGAGCTGAAGA 720
Query 667 ATTCTGTCGTCAAAAGCAATGGAAGGGAATCTGGCTTCATCGAAATGACAAGTCCTGATG 726
||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 721 ATTCTGTTGTCAAAAGCAATGGAAGGGAATCTGGCTTCATCGAATTAACAAGTCCTGATG 780
Query 727 CGGAAGTTTTCATTTGCACAAATGATATAGAAATGGGAATCCAGCTGCATCAGGATGCAT 786
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 781 CGGAAGTTTTCATTTGCACAAATGATATAGAAATGGGAATCCAGCAGCATCAGGATGCAT 840
Query 787 TGCTTGAGCTTGGATGTTCTTGCAAAAACGAGCTTGCTTTGGTACACTACGCTTGCGCAC 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 TGCTTGAGCTTGGATGTTCTTGCAAAAACGAGCTTGCTTTGGTACACTACGCTTGCGCGC 900
Query 847 TCAAGTGGTTTCTCAACCATGGATCCACCGTGTGTGAAATCTGTGGACATCCTGCAGAAA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCAAGTGGTTTCTCAACCATGGATCCACCGTGTGTGAAATCTGTGGACATCCTGCAGAAA 960
Query 907 ATATAAAGACTGCTGATTTCAACAAAGTGCTCATTGCCTTGAGAGATTACACAGCACTAA 966
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 961 ATATAAAGACTGCTGATTTCAACAAAGTGGTCATTGCCTTGAGAGATTACACAGCAATAA 1020
Query 967 GAGAAAGAACCGCTGATGGAGGAGATCCAATCCCTGTATTAGCGGTGAGTGCAGATTCAA 1026
|||||||||| |||||||||||||||| ||||||||||||| |||||| | |||||||||
Sbjct 1021 GAGAAAGAACTGCTGATGGAGGAGATCAAATCCCTGTATTACCGGTGAATACAGATTCAA 1080
Query 1027 CCATAGATTCAGATGAAGTTGCTGCCATTCGAAGGCAACGACTTAGTGAGATATCGTCAT 1086
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1081 CCATTGATTCAGATGAAGTTGCTGTCATTCGAAGGCAACGACTTAGTGAGATAACGTCAT 1140
Query 1087 GGTTTGGTCCCCATTCCCTGAACAACAACAACAATAGTTCT-GTTGCGGCTTCTCAGGCT 1145
|||||||||||||||||||||||||||||||||| | | ||| | | || | ||||
Sbjct 1141 GGTTTGGTCCCCATTCCCTGAACAACAACAACAACAACAATAGTT-CTG-TTG-C-GGCT 1196
Query 1146 ATCCCTGACCAACCTTTAGGAGTTGTGAACTTTGACATCTTACCTATGGAAAGCCGTGCA 1205
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 1197 ATCCCTGACCAACCTTTAGGTGTTGTGAACTTCGACATCTTACCTATGGAAAACCGTGCA 1256
Query 1206 ACTAAATGGGCTGTGGAAGGTACTGGGATTCTACTTGCTACCGGTTTACTCACTGTTACT 1265
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1257 ACTAAATGGGCTGTGGAAGGTACTGGGATTCTACTTGCTACAGGTTTACTCACTGTTACT 1316
Query 1266 TTGGTCTGGCTCATTGCCCCTCGTGTTGGAAAGAAAACTGCTAGGAGCGGACTTCACATC 1325
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TTGGTCTGGCTCATTGCCCCTCGTGTTGGAAAGAAAACTGCTAGGAGCGGACTTCACATA 1376
Query 1326 CTTCTTGGTGGTCTCTGTGCTTTAACAATAGTCATCTTCTTCAGATTTGTTGTGCTCACT 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CTTCTTGGTGGTCTCTGTGCTTTAACAATAGTCATCTTCTTCAGATTTGTTGTGCTCACT 1436
Query 1386 AGAATCAGGTATGGTCCTGCACGCTACTGGGCAATCTTATTCATCTTCTGGTTTCTTGTG 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGAATCAGGTATGGTCCTGCACGCTACTGGGCAATCTTATTCATCTTCTGGTTTCTTGTG 1496
Query 1446 TTTGGTATTTGGGCTTCTCGTTCTAATGCTTCTCACAATAACCCTTGAATTCACCATCTC 1505
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1497 TTTGGTATTTGGGCTTCTCGTTCTAATGCTTCTCACAATAGCCCTTGAATCCACCATCTC 1556
Query 1506 TCTC--T-----AT--CT----ATCT----GAGTCTGT--ATTCTT-CTCATGGAGAAAA 1545
|||| | || || |||| |||||||| |||||| ||| |||||||||
Sbjct 1557 TCTCAATCTCTCATGTCTCTCTATCTATCTGAGTCTGTGTATTCTTTCTCTTGGAGAAAA 1616
Query 1546 ATGTACATTGCTTCATTAAAGAA-AAATAAGCTCATGCTTCATTGAATATATATATGATT 1604
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1617 ATGTACATTGCTTCATTAAAGAAGAAATAAGCTCATGCTTCATTGAATATATATATGATT 1676
Query 1605 CATAATGGTTGGTC 1618
||||||||||||||
Sbjct 1677 CATAATGGTTGGTC 1690
Score = 501 bits (271), Expect = 8e-141
Identities = 344/376 (91%), Gaps = 18/376 (5%)
Strand=Plus/Plus
Query 1 GAATCTAAAACCACTCAGCTCTCCGCACCATGTGAAAGGTTGGTGTAGTGGCAAGAACTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAATCTAAAACCACTCAGCTCTCCGCACCATGTGAAAGGTTGGTGTAGTGGCAAGAACTC 60
Query 61 TTTCGAATCTGAACGCCTT-AGCTCAGAGATACGAGCA--TT--------TT----TTAC 105
||||||||||||||||||| ||||| |||| ||||||| || || ||||
Sbjct 61 TTTCGAATCTGAACGCCTTAAGCTCTGAGAGACGAGCATTTTCCAGAAAATTCCCATTAC 120
Query 106 CTAATCCCCACAATTCCAGGAACCCAGAAATGATGGTTTTCGAAAGGCTCTAGCTTTCTC 165
|||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTAATCCCCAGGATTCGATGAACCCAGAAATGATGGTTTTCGAAAGGCTCTAGCTTTCTC 180
Query 166 AAATCGAGATTTTGCTGAGGAGCTCATTGAAAGAATGCAAAATAGACCATCTTTCTCTTG 225
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 181 AAATCCAGATTTTGCTGAGGAGCTCGTTGAAAGAATGCAAAATAGACCATCTCTCTCTTG 240
Query 226 TCCTTTGTCTTTCAGATCGTTTCTCTTTCAACGTGATATTAGAAG-ACAATACTAGATAC 284
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 241 TCCTTTGTCTTTCAGATCGTTTCTCTTTCAACGTGATATTAGA-GTACAATACTAGATAC 299
Query 285 AGTGAGGTCCTTTGTATTATCGGACCTTGAGTTGTCTTGTTTAAGTGGGATAACCTTT-T 343
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 300 CGTGAGGTCCTTTGTATTATTGGACCTTGAGTTGTCTTGTCTAAGTGGGATAACCTTTCT 359
Query 344 AGTGAACttttttttG 359
||||||| |||| |||
Sbjct 360 AGTGAACATTTTCTTG 375
> AT5G08750.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:2852106-2854513 FORWARD LENGTH=1416
Length=1416
Score = 549 bits (297), Expect = 3e-155
Identities = 656/821 (80%), Gaps = 58/821 (7%)
Strand=Plus/Plus
Query 702 TTCATCGAAATGACAAGTCCTGATGCG-GAAG-TTTTCATT-TGCACAA--ATGATATAG 756
||||||||| ||| ||||||||||| | |||| |||| || |||| || | |||||||
Sbjct 431 TTCATCGAACTGATAAGTCCTGATG-GAGAAGTTTTTGTTTGTGCA-AACGACGATATAG 488
Query 757 AAATGGGAATC-CAGCTGCATCAG-GATGCA-TTGCTTGAGCTTGGATGTTCTTGCAAAA 813
||||||| | | || ||||| | ||| | ||||| || ||||||||||||||||| |
Sbjct 489 AAATGGG-AGCGTGGCAGCATC-GAGAT-AAGTTGCTAGAACTTGGATGTTCTTGCAAGA 545
Query 814 ACGAGCTTGCTTTGGTACACTACGCTTGCGCACTCAAGTGGTTTCTCAACCATGGATCCA 873
| || || |||||||||||||| ||||| ||| | || |||||| ||||||| ||||| |
Sbjct 546 ATGATCTCGCTTTGGTACACTATGCTTGTGCATTGAAATGGTTTGTCAACCACGGATCAA 605
Query 874 CCGTGTGTGAAATCTGTGG-ACATCCTGCAGAAAATATAAAG-ACTGCTGATTTCAACAA 931
| || ||||| || || || | | || | || ||||| ||| || | ||||||||||||
Sbjct 606 CTGTTTGTGAGATATGCGGAAAAACC-ACGGAGAATAT-AAGAACAGTTGATTTCAACAA 663
Query 932 AGTGCTCATTGCCTTGAGAGATTACACAGCACTAAGAGAAAGAACCGCTGATGGAGGAGA 991
|||| | || ||||| | ||||||| |||| |||||||||||||| || ||| |||||
Sbjct 664 AGTGGTTATCGCCTTAAAAGATTACGCAGCGCTAAGAGAAAGAACAGCGGAT---GGAGA 720
Query 992 TCC-AATCCCTGTA----TTAGCGGTGAGTGCAGAT--TCAACCATAGATTCAGATGAAG 1044
||| ||| |||||| ||| | | ||| | ||| || ||| | |||| ||
Sbjct 721 TCCAAAT-CCTGTAGTGGTTAACAACAACACCAGTTCGTCAGGGATTGATCCTGATGCAG 779
Query 1045 TTGCTGCCATTCGAAGGCAACGACTTAGTGAGATATCGTCATGGTTTGGTCCCCATTCCC 1104
|||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 780 TTGCAGCCATTCGAAGGCAACGACTTAGTGAGATATCGTTATGGTTTGGTCCTCATTGT- 838
Query 1105 TGAAC-AACAACAACAATAGT--TC-T---G-T--TGC-GG--C---TTCT-C--AGGCT 1145
| ||| ||||||||||||||| | | | | ||| || | |||| | ||| |
Sbjct 839 TCAACCAACAACAACAATAGTAGTAATTCCGCTGCTGCAGGGACGGCTTCTTCTCAGGTT 898
Query 1146 ATCC-CTGACCAACCTTTAGGAGT-T-GTGAACTTTGACATCTTACCTATGGAAAGCCGT 1202
| | |||| |||||| | || || | || |||||||| ||||| |||||||||||||||
Sbjct 899 A-CATCTGAACAACCTGT-GG-GTATAGTAAACTTTGATATCTTGCCTATGGAAAGCCGT 955
Query 1203 GCAACTAAATGGGCTGTGGAAGGTACTGGGATTCTACTTGCTACCGGTTTACTCACTGTT 1262
|| ||||||||||| ||||||||||| || || |||||||| ||||| |||||||| |||
Sbjct 956 GCGACTAAATGGGCGGTGGAAGGTACCGGAATACTACTTGCAACCGGATTACTCACAGTT 1015
Query 1263 ACTTTGGTCT-GGCTCATTGCCCCTCGTGTTGGAAAGAAAACTGCTAGGAGCGGACTTCA 1321
||||||| || |||||||||| |||||||| ||||||| |||||| | ||| || || ||
Sbjct 1016 ACTTTGG-CTTGGCTCATTGCTCCTCGTGTCGGAAAGAGAACTGCAAAGAGTGGTCTACA 1074
Query 1322 CATCCTTCTTGGTGGTCTCTGTGCTTTAACAATAGTCATCTTCTTCAGATTTGTTGTGCT 1381
||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1075 CATACTTCTAGGTGGTCTCTGTGCTTTAACAGTAGTCATCTTCTTCAGATTCGTTGTGCT 1134
Query 1382 CACTAGAATCAGGTATGGTCCTGCACGCTACTGGGCAATCTTATTCATCTTCTGGTTTCT 1441
|| ||||||||||| || || ||||| ||||||||||| || ||| |||||||||||||
Sbjct 1135 GACAAGAATCAGGTACGGACCAGCACGTTACTGGGCAATATTGTTCGTCTTCTGGTTTCT 1194
Query 1442 TGTGTTTGGTATTTGGGCTTCTCGTTCTA-ATGCTTCTCAC 1481
||||||||| ||||||||||| ||||| | | |||||||||
Sbjct 1195 TGTGTTTGGCATTTGGGCTTCACGTTC-ACACGCTTCTCAC 1234
> AT5G63790.1 | Symbols: ANAC102, NAC102 | NAC domain containing
protein 102 | chr5:25526509-25528013 REVERSE LENGTH=1317
Length=1317
Score = 147 bits (79), Expect = 4e-34
Identities = 82/83 (99%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 1537 TGGAGAAAAATGTACATTGCTTCATTAAAGAA-AAATAAGCTCATGCTTCATTGAATATA 1595
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1316 TGGAGAAAAATGTACATTGCTTCATTAAAGAAGAAATAAGCTCATGCTTCATTGAATATA 1257
Query 1596 TATATGATTCATAATGGTTGGTC 1618
|||||||||||||||||||||||
Sbjct 1256 TATATGATTCATAATGGTTGGTC 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79919267640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5