BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496573
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63850.1 | Symbols: AAP4 | amino acid permease 4 | chr5:2555... 2798 0.0
AT5G09220.1 | Symbols: AAP2 | amino acid permease 2 | chr5:2866... 1275 0.0
> AT5G63850.1 | Symbols: AAP4 | amino acid permease 4 | chr5:25551055-25553520
FORWARD LENGTH=1847
Length=1847
Score = 2798 bits (1515), Expect = 0.0
Identities = 1716/1809 (95%), Gaps = 29/1809 (2%)
Strand=Plus/Plus
Query 23 ATGTAGCCG-AC-TTTTACATATCTGACCTGTATATTTCTTA-AATAATTTATCAAAGAA 79
||||||||| || ||||||||||||||||||||||| | | | ||| |||||||||||||
Sbjct 39 ATGTAGCCGAACTTTTTACATATCTGACCTGTATATATATAATAATTATTTATCAAAGAA 98
Query 80 ATTAGAAAAAGATTCCTCTCCACTTTTGATGGCTTATAAAAGATGATGACCCAAAGACAC 139
|||||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 99 ATTAGAGAAAGATT-CT-TCCACTTTTGATGGCTTATAAAAGATGATGACCCAAA-ACAC 155
Query 140 TCAATATGCAGCAGCAACTGCTCTCTCACCACCCATCTCATTatttctcttttgca---- 195
|||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 156 TCAAAATGCAGCAGCAACTGCTCTCTCACCACCCATCTCCTCATTTCTCTTTTGCATTTC 215
Query 196 --------tttct---tt-c-tt-tttt--ggggtttaattttgtgcatacctttgtcta 239
||||| || | || |||| ||||||||||||| |||||| |||||||||
Sbjct 216 TTTCTTTTTTTCTGCATTGCATTCTTTTGAGGGGTTTAATTTTCTGCATAGCTTTGTCTA 275
Query 240 atttcttAGAGCTCAATAAGTGAAGATGGATGTTCCACGGCCAGCTTTCAAATGTTTCGA 299
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 276 ATCTCTTAGAGCTCAATAAGAGAAGATGGATGTTCCACGGCCAGCTTTCAAATGTTTTGA 335
Query 300 TGACGATGGCCGGCTTAAACGTTCAGGGACGGTTTGGACCGCGAGTGCGCATATTATAAC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 336 TGACGATGGCCGGCTTAAACGTTCAGGGACGGTTTGGACCGCGAGTGCGCATATCATAAC 395
Query 360 CGCTGTGATTGGTTCTGGTGTTCTATCGCTTGCGTGGGCAATAGGTCAACTCGGTTGGAT 419
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 396 CGCCGTGATTGGATCTGGTGTTCTATCGCTTGCGTGGGCTATAGGTCAACTCGGTTGGAT 455
Query 420 CGCAGGTCCTACAGTGATGCTCTTGTTCTCTTTTGTCACTTACTACTCTTCGACTCTTCT 479
||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||
Sbjct 456 CGCAGGTCCTACAGTGATGTTGTTGTTCTCTTTTGTCACTTACTACTCTTCCACGCTTCT 515
Query 480 TAGCGACTGCTACAGAACCGGAGATCCTGTCTCTGGGAAGAGAAACTATACTTACATGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TAGCGACTGCTACAGAACCGGAGATCCTGTCTCTGGGAAGAGAAACTATACTTACATGGA 575
Query 540 CGCTGTCCGATCAATCCTCGGTGGCTTTAGGTTCAAGATTTGTGGGCTGATTCAGTATTT 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 576 CGCTGTCCGATCAATCCTAGGTGGCTTTAGGTTCAAGATTTGTGGGCTGATTCAGTATTT 635
Query 600 GAATCTCTTTGGTATCACGGTCGGGTACACAATCGCAGCATCTATAAGTATGATGGCGAT 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GAATCTGTTTGGTATCACGGTCGGGTACACAATCGCAGCATCTATAAGTATGATGGCGAT 695
Query 660 CAAGAGGTCCAACTGTTTCCATGAGAGCGGAGGGAAAAACCCGTGTCACATGTCGAGCAA 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 696 CAAGAGGTCCAACTGTTTCCACGAGAGCGGAGGGAAAAACCCGTGTCACATGTCGAGCAA 755
Query 720 TCCATACATGATCATGTTTGGTGTGACCGAGATCTTGCTCTCTCAGATCAAAGATTTTGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 TCCATACATGATCATGTTTGGTGTGACCGAGATCTTGCTCTCTCAGATCAAAGATTTTGA 815
Query 780 CCAGATTTGGTGGCTCTCCATTGTCGCTGCTATCATGTCCTTCACATACTCTGCAATCGG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CCAGATTTGGTGGCTCTCCATTGTCGCTGCTATCATGTCCTTCACATACTCTGCAATCGG 875
Query 840 TTTAGCTCTCGGAATCATTCAAGTCGCTGCCAATGGGGTTGTCAAGGGAAGTCTCACCGG 899
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 876 TTTAGCTCTCGGAATCATTCAAGTCGCGGCAAATGGAGTTGTCAAGGGAAGTCTCACCGG 935
Query 900 AATTAGCATCGGGGCAGTGACTCAGACCCAAAAGATATGGAGAACATTTCAAGCACTTGG 959
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 936 AATTAGCATCGGCGCAGTGACTCAGACCCAAAAAATATGGAGAACCTTTCAAGCACTTGG 995
Query 960 AGACATTGCCTTTGCTTATTCATACTCTGTTGTTCTTATCGAAATTCAGGACACTGTAAA 1019
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 996 AGACATTGCCTTTGCTTATTCATACTCTGTTGTTCTTATTGAAATTCAGGACACTGTAAG 1055
Query 1020 ATCTCCACCAGCAGAATCAAAAACGATGAAGATCGCCACAAGAATCAGCATCGCCGTTAC 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1056 ATCTCCACCAGCAGAATCAAAAACGATGAAGATCGCCACAAGAATCAGCATCGCTGTTAC 1115
Query 1080 AACGACATTTTACCTGCTATGTGGTTGTATGGGCTATGCCGCCTTTGGAGATGCAGCACC 1139
||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1116 AACGACATTTTACATGCTATGTGGTTGTATGGGCTATGCCGCCTTCGGAGATAAAGCACC 1175
Query 1140 GGGAAACCTCTTAACCGGTTTTGGTTTCTACAATCCGTTTTGGCTCCTTGACGTGGCTAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 GGGAAACCTCTTAACCGGTTTTGGTTTCTACAATCCGTTTTGGCTCCTTGACGTGGCTAA 1235
Query 1200 CGCTGCCATTGTTGTCCACCTCGTAGGAGCTTACCAAGTCTTTGCTCAGCCCATCTTCGC 1259
||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1236 CGCTGCCATAGTTATCCACCTTGTAGGAGCTTATCAAGTCTTTGCTCAGCCCATCTTCGC 1295
Query 1260 CTTTATTGAAAAACAAGCTGCCGCTAGGTTTCCTGACAGTGACTTGGTCACCAAGGAATA 1319
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1296 CTTTATTGAGAAACAAGCTGCCGCTAGGTTTCCCGACAGTGACTTGGTGACCAAGGAATA 1355
Query 1320 CGAAATCCGAATCCCTGGTATTAGGTCACCTTACAAAGTCAACGTTTTCAGAGCAGTTTA 1379
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1356 CGAAATCCGAATCCCTGGTTTTAGGTCACCGTACAAAGTCAACGTTTTCAGAGCAGTTTA 1415
Query 1380 CCGGAGCGGGTTTGTGGTTTTGACCACTGTGATATCGATGCTTATGCCGTTTTTCAACGA 1439
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1416 CCGAAGCGGGTTTGTGGTTTTGACCACTGTGATATCCATGCTTATGCCGTTTTTCAACGA 1475
Query 1440 CGTCGTGGGGATTTTAGGTGCGTTAGGGTTTTGGCCATTGACGGTTTACTTTCCGGTTGA 1499
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1476 CGTCGTAGGGATTTTAGGTGCGTTAGGGTTTTGGCCTTTGACGGTTTACTTTCCGGTGGA 1535
Query 1500 GATGTATATAAGACAGAGGAAGGTTGAGAGATGGAGTATGAAGTGGGTTTGTCTGCAGAT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 GATGTATATAAGACAGAGGAAGGTTGAGAGATGGAGTATGAAGTGGGTTTGTCTGCAGAT 1595
Query 1560 GTTGAGCTGTGGTTGTTTGATGATCACATTGGTTGCCGGAGTTGGCTCCATCGCCGGAGT 1619
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1596 GTTGAGCTGTGGTTGTTTGATGATCACGTTGGTCGCCGGAGTTGGCTCCATCGCCGGAGT 1655
Query 1620 AATGCTTGACCTTAAGGTTTACAAGCCGTTCAAGACTACTTACTAAAGAAA--ATCATGA 1677
|||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1656 AATGCTAGACCTTAAGGTTTACAAGCCGTTCAAGACTACTTACTAAACAAACCATGATGA 1715
Query 1678 TGATGATGAAGAAGAAGGTGTTGGAGGAAAAAACAAAAGGTACAAATTTTAATATATTTC 1737
|||||| ||||||||||||| ||||| |||||||||||| || |||||||||||||||||
Sbjct 1716 TGATGAAGAAGAAGAAGGTGGTGGAGAAAAAAACAAAAGATATAAATTTTAATATATTTC 1775
Query 1738 ATTTGGGGAAATGTGAATAATGTAAAAGTTTCTTCGTTTAGTATAATTATTATCTTTCGT 1797
|||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||
Sbjct 1776 ATTTGGGGAAATGTGAATAATGTAAAAGTT-CTTCGTTTCGTATAATTTTTATCTTGCGT 1834
Query 1798 AATTTATAT 1806
|||||||||
Sbjct 1835 AATTTATAT 1843
> AT5G09220.1 | Symbols: AAP2 | amino acid permease 2 | chr5:2866252-2869054
FORWARD LENGTH=1794
Length=1794
Score = 1275 bits (690), Expect = 0.0
Identities = 1169/1401 (83%), Gaps = 30/1401 (2%)
Strand=Plus/Plus
Query 273 TCCACGGCCAGCTTTCAAATGTTTCGATGACGATGGCCGGCTTAAACGTTCAGGGACGGT 332
||||| || ||||| ||||| |||||||| |||||||| || ||| | | ||||| ||
Sbjct 211 TCCACAACCGGCTTTTAAATGCTTCGATGATGATGGCCGCCTCAAAAGAACTGGGACTGT 270
Query 333 TTGGACCGCGAGTGCGCATATTATAACCGCTGTGATTGGTTCTGGTGTTCTATCGCTT-G 391
|||||||||||| || ||||| ||||| || || || || || || ||| | || || |
Sbjct 271 TTGGACCGCGAGCGCTCATATAATAACTGCGGTTATCGGATCCGGCGTTTTGTC-ATTGG 329
Query 392 CGTGGGCAATAGGTCAACTCGGTTGGATCGCAGGTCCTACAGTGATGCTCTTGTTCTCTT 451
||||||| || | || ||||| |||||||| || ||| | |||||||| |||||||||
Sbjct 330 CGTGGGCGATTGCACAGCTCGGATGGATCGCTGGCCCTGCTGTGATGCTATTGTTCTCTC 389
Query 452 TTGTCACT-TACTACTCTTCGACTCTTCTTAGCGACTGCTACAGAACCGGAGATCCTGTC 510
|||| ||| | ||||| || || |||||||||||||||||||||||||| ||| | ||
Sbjct 390 TTGTTACTCT-TTACTCCTCCACACTTCTTAGCGACTGCTACAGAACCGGCGATGCAGTG 448
Query 511 TCTGGGAAGAGAAACTATACTTACATGGACGCTGTCCGATCAATCCTCGGTGGCTTTAGG 570
||||| ||||||||||| ||||||||||| || || |||||||| |||||||| || | |
Sbjct 449 TCTGGCAAGAGAAACTACACTTACATGGATGCCGTTCGATCAATTCTCGGTGGGTTCAAG 508
Query 571 TTCAAGATTTGTGGGCTGATTCAGTATTTGAATCTCTTTGGTATCACGGTCGGGTACACA 630
||||||||||||||| ||||||| || |||||||||||||||||| | | || |||||
Sbjct 509 TTCAAGATTTGTGGGTTGATTCAATACTTGAATCTCTTTGGTATCGCAATTGGATACACG 568
Query 631 ATCGCAGCATCTATAAGTATGATGGCGATCAAGAGGTCCAACTGTTTCCATGAGAGCGGA 690
|| ||||| || ||||| ||||||||||||||||| |||||||| ||||| |||| |||
Sbjct 569 ATAGCAGCTTCCATAAGCATGATGGCGATCAAGAGATCCAACTGCTTCCACAAGAGTGGA 628
Query 691 GGGAAAA-ACCCGTGTCACATGTCGAGCAATCCATACATGATCATGTTTGGTGTGACCGA 749
|||||| |||| ||||||||||| || ||||| ||||||||| | ||||||||| | ||
Sbjct 629 -GGAAAAGACCCATGTCACATGTCCAGTAATCCTTACATGATCGTATTTGGTGTGGCAGA 687
Query 750 GATCTTGCTCTCTCA-GATCAAAGATTTTGACCAGATTTGGTGGCTCTCCATTGTCGCTG 808
||||||||||||||| | || ||||| || |||||||||||| |||||||||| || |
Sbjct 688 GATCTTGCTCTCTCAGGTTC-CTGATTTCGATCAGATTTGGTGGATCTCCATTGTTGCAG 746
Query 809 CTATCATGTCCTTCACATACTCTGCAATCGGTTTAGCTCTCGGAATCATTCAAGTCGCTG 868
|| | ||||||||||| |||||||| || ||| ||||||| |||||| ||||||| || |
Sbjct 747 CTGTTATGTCCTTCACTTACTCTGCCATTGGTCTAGCTCTTGGAATCGTTCAAGTTGCAG 806
Query 869 CCAATGGGGTTGTCAAGGGAAGTCTCACCGGAATTAGCATCGGGGCAGTGACTCAGACCC 928
| ||||| ||| |||| ||||||||||| ||||| |||||||| |||||||||| || |
Sbjct 807 CGAATGGAGTTTTCAAAGGAAGTCTCACTGGAATAAGCATCGGAACAGTGACTCAAACAC 866
Query 929 AAAAGATATGGAGAACATTTCAAGCACTTGGAGACATTGCCTTTGCTTATTCATACTCTG 988
| |||||||||||||| || |||||||||||||||||||||||||| || ||||||||||
Sbjct 867 AGAAGATATGGAGAACCTTCCAAGCACTTGGAGACATTGCCTTTGCGTACTCATACTCTG 926
Query 989 TTGTTCTTATCGAAATTCAGGACACTGTAAAATCTCCACCAGCAGAATCAAAAACGATGA 1048
|||| || ||||| |||||||| ||||||| ||| ||||| || ||||| ||||||||||
Sbjct 927 TTGTCCTAATCGAGATTCAGGATACTGTAAGATCCCCACCGGCGGAATCGAAAACGATGA 986
Query 1049 AGATCGCCACAAGAATCAGCATCGCCGTTACAACGA-CATTTTACCTGCTATGTGGTTGT 1107
||| || |||| |||||| || ||||| ||||| | | || ||| |||||||||| |
Sbjct 987 AGAAAGCAACAAAAATCAGTATTGCCGTCACAACTATC-TTCTACATGCTATGTGGCTCA 1045
Query 1108 ATGGGCTATGCCGCCTTTGGAGATGCAGCACCGGGAAACCTCTTAACCGGTTTTGGTTTC 1167
||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 1046 ATGGGTTATGCCGCTTTTGGAGATGCAGCACCGGGAAACCTCCTCACCGGTTTTGGATTC 1105
Query 1168 TACAATCCGTTTTGGCTCCTTGACGTGGCTAACGCTGCCATTGTTGTCCACCTCGTAGGA 1227
||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| |||
Sbjct 1106 TACAACCCGTTTTGGCTCCTTGACATAGCTAACGCCGCCATTGTTGTCCACCTCGTTGGA 1165
Query 1228 GCTTACCAAGTCTTTGCTCAGCCCATCTTCGCCTTTATTGAAAAA-CAAG-CTGCCGCTA 1285
||||||||||||||||||||||||||||| ||||||||||||||| || | | || | |
Sbjct 1166 GCTTACCAAGTCTTTGCTCAGCCCATCTTTGCCTTTATTGAAAAATCA-GTC-GCAGAGA 1223
Query 1286 GGTTTCCTGACAGTGACTTGGTCACCAAGGAATACGAAATCCGAATCCCTGGTATT-AGG 1344
| | ||| |||| |||||| ||| |||||||| |||||| ||||||| || ||| | |
Sbjct 1224 GATATCCAGACAATGACTTCCTCAGCAAGGAATTTGAAATCAGAATCCCCGG-ATTTAAG 1282
Query 1345 TCACCTTACAAAGTCAACGTTTTCAGAGCA-G-TTTACCGGAGCGGGTTTGTGGTTTTGA 1402
|| ||||||||||| ||||||||||| | | | ||||| |||| || ||||| ||| |
Sbjct 1283 TCTCCTTACAAAGTAAACGTTTTCAG-G-ATGGTTTACAGGAGTGGCTTTGTCGTTACAA 1340
Query 1403 CCACTGTGATATCGATGCTTATGCCGTTTTTCAACGACGTCGTGGGGATTTTAGGTGCGT 1462
|||| |||||||||||||| ||||||||||| |||||||| || ||||| ||||| ||||
Sbjct 1341 CCACCGTGATATCGATGCTGATGCCGTTTTTTAACGACGTGGTCGGGATCTTAGGGGCGT 1400
Query 1463 TAGGGTTTTGGCCATTGACGGTTTACTTTCCGGTTGAGATGTATAT-AAGACAGAGGAAG 1521
||||||||||||| ||||||||||| |||||||| ||||||||||| ||| |||||||||
Sbjct 1401 TAGGGTTTTGGCCCTTGACGGTTTATTTTCCGGTGGAGATGTATATTAAG-CAGAGGAAG 1459
Query 1522 GTTGAGAGATGGAGTATGA-AGTGGGTTTGTCTGCAGATG-TTGAGCTGTGG-TTGT-TT 1577
||||||| |||||| | || | ||||| ||| | |||||| || || ||| | |||| ||
Sbjct 1460 GTTGAGAAATGGAGCACGAGA-TGGGTGTGTTTACAGATGCTT-AG-TGTTGCTTGTCTT 1516
Query 1578 GATGATCACATTGGTTGCCGGAGTTGGCTCCATCGCCGGAGTAATGCTTGACCTTAAGGT 1637
| ||||| | |||| ||||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct 1517 G-TGATCTCGGTGGTCGCCGGGGTTGGATCAATCGCCGGAGTGATGCTTGATCTTAAGGT 1575
Query 1638 TTACAAGCCGTTCAAGACTAC 1658
|| ||||| |||||| ||||
Sbjct 1576 CTATAAGCCATTCAAGTCTAC 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89356970100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5