BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496574
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63860.1 | Symbols: UVR8 | Regulator of chromosome condensat... 2567 0.0
> AT5G63860.1 | Symbols: UVR8 | Regulator of chromosome condensation
(RCC1) family protein | chr5:25554508-25559499 REVERSE
LENGTH=2117
Length=2117
Score = 2567 bits (1390), Expect = 0.0
Identities = 1563/1643 (95%), Gaps = 25/1643 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTTTCCTTGTTCAACCCTC--GAGATTACGGATAGTGAAAGAGAAGCTGC-AAAT 57
||| |||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 329 TCTGTCTTTCCTTGTTCAACCCTCGAGAGATTACGGATAGTGAAAGAGAAGCTACAAAAT 388
Query 58 TTCCCAATTTATCAAAAAATAGAAATTTCATA-TTTTTT-aaaa-aaaTATCT-----TG 109
||||||||||||||||||||||||||||| || |||||| |||| || |||
Sbjct 389 TTCCCAATTTATCAAAAAATAGAAATTTCTTACTTTTTTCAAAATTCATTTCTCCCCAAA 448
Query 110 TGAGA-A-C---TG-CTACTGCTACTGTGATCCATGGCGGAGGAGATGGCTGCCGATGAA 163
| | | | || ||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 449 AAAAATATCTTGTGAAAACTGCAACTGTGATCCATGGCGGAGGATATGGCTGCCGACGAA 508
Query 164 GTTACAGCTCCTCCTCGTACGGTTCTTATCATCTCCGCTGGTGCTAGCCACTCCGTCGCT 223
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GTTACGGCTCCTCCTCGTAAGGTTCTTATCATCTCCGCTGGTGCTAGCCACTCCGTCGCT 568
Query 224 CTTCTCTCTGGTGACATTGTTTGTTCTTGGGGTCGAGGAGAGGATGGACAGTTAGGTCAT 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CTTCTCTCTGGTGACATTGTTTGTTCTTGGGGTCGAGGAGAGGATGGACAGTTAGGTCAT 628
Query 284 GGAGATGCAGAGGATCGACCTTCTCCCACGCAGCTTAGCGCGTTAGATGGCCACCAAATT 343
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 629 GGCGATGCAGAGGATCGACCTTCTCCGACTCAGCTTAGCGCTTTAGATGGCCACCAAATT 688
Query 344 GTTTCCGTTACCTGTGGTGCTGATCACACTGTTGCTTATTCACAATCTGGCATGGAGGTC 403
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 689 GTTTCCGTTACCTGTGGTGCTGATCACACTGTTGCTTATTCACAATCAGGCATGGAAGTC 748
Query 404 TACAGTTGGGGATGGGGGGATTTTGGGAGATTAGGCCATGGTAACTCAAGCGACTTGTTT 463
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TACAGTTGGGGATGGGGTGATTTTGGGAGATTAGGCCATGGTAACTCAAGCGACTTGTTT 808
Query 464 ACTCCCCTACCAATCAAAGCATTGCACGGTATTCGGATCAAGCAGATTGCTTGTGGGGAT 523
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 ACTCCGCTACCAATCAAAGCATTGCACGGTATTCGGATCAAGCAGATTGCTTGTGGGGAT 868
Query 524 AGTCATTGTTTAGCTGTCACTATGGAAGGAGAGGTCCAGAGTTGGGGGCGCAACCAGAAT 583
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 869 AGTCATTGTTTGGCTGTCACTATGGAAGGAGAGGTCCAGAGTTGGGGCCGCAACCAGAAT 928
Query 584 GGTCAACTTGGTCTGGGGGACACCGAAGATTCTCTAGTGCCTCAGAAGATTCAAGCCTTT 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GGTCAACTTGGTCTGGGGGACACCGAAGATTCTCTAGTGCCTCAGAAGATTCAAGCCTTT 988
Query 644 GAGGGAATACGAATCAAAATGGTTGCTGCTGGTGCGGAACACACTGCTGCGGTTACAGAA 703
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 989 GAGGGAATACGAATCAAAATGGTTGCTGCTGGTGCAGAACACACTGCTGCAGTTACAGAA 1048
Query 704 GATGGTGACCTATATGGATGGGGCTGGGGAAGATACGGAAATTTGGGATTAGGTGACCGG 763
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GATGGTGACCTCTATGGATGGGGCTGGGGAAGATACGGAAATTTGGGATTAGGTGACCGG 1108
Query 764 AATGACCGCTTGGTTCCTGAAAGAGTTACCTCTGCTGGGGGTGAGAAGATGTCAATGGTC 823
| ||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 1109 ACTGACCGCTTAGTTCCTGAAAGAGTTACCTCTACTGGTGGTGAGAAAATGTCAATGGTT 1168
Query 824 GCTTGTGGATGGCGGCACACAATATCAGTTTCCTACTCTGGAGCATTATATACTTATGGA 883
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1169 GCTTGTGGATGGCGGCACACAATATCAGTTTCCTACTCTGGAGCATTGTATACTTATGGA 1228
Query 884 TGGAGCAAATATGGACAGCTAGGACATGGAGACTTGGAGGATCACCTTATTCCTCACAAA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 TGGAGCAAATATGGACAGCTAGGACATGGAGACTTGGAGGATCACCTTATTCCTCACAAA 1288
Query 944 TTGGAAGCACTGAGCAACAGTTTTATCTCCCAGATTTCGGGAGGTTGGAGACATACAATG 1003
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 CTGGAAGCACTGAGCAACAGTTTTATCTCCCAGATTTCGGGAGGTTGGAGACATACAATG 1348
Query 1004 GCATTGACTTCAGATGGAAAACTATATGGATGGGGTTGGAATAAGTTTGGGCAAGTAGGA 1063
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1349 GCATTGACTTCAGATGGAAAACTATATGGATGGGGTTGGAATAAGTTTGGACAAGTAGGA 1408
Query 1064 GTCGGCAATAATTTAGATCAGTGTTCTCCTGTGCAAGTGCGATTTCCCGATGATCAGAAA 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 GTCGGCAATAATTTAGATCAGTGTTCTCCTGTGCAAGTGCGATTTCCCGATGATCAGAAA 1468
Query 1124 GTAGTTCAAGTCTCATGTGGATGGAGACATACCTTGGCTGTTACTGAAAGAAATAATGTG 1183
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1469 GTAGTTCAAGTCTCATGTGGATGGAGACATACCTTGGCTGTCACTGAAAGAAATAACGTG 1528
Query 1184 TTTGCGTGGGGTAGAGGTACAAATGGACAGCTCGGCATTGGAGAGTCAGTTGACAGGAAC 1243
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1529 TTTGCTTGGGGTAGAGGTACAAATGGACAGCTCGGCATTGGAGAGTCGGTTGACAGGAAC 1588
Query 1244 TTTCCCAAGATTATAGAGGCACTGAGCGTCGATGGAGCAAGTGGGCAACATATAGAATCT 1303
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1589 TTTCCCAAGATTATAGAGGCACTCAGCGTCGATGGAGCAAGTGGACAACATATAGAATCT 1648
Query 1304 TCTAATATCGATCCATCTTCAGGGAAAAGCTGGGTGTCCCCTGCAGAGAGATATGCAGTT 1363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1649 TCTAATATCGATCCATCTTCAGGGAAAAGCTGGGTGTCGCCTGCAGAGAGATATGCAGTT 1708
Query 1364 GTTCCTGATGAAACGGGCCTAACCGATGGTTCAAACAAAGGTAATGGAGGTGATATCAGT 1423
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1709 GTTCCTGATGAAACGGGCCTAACGGATGGTTCAAGCAAAGGTAATGGAGGTGATATCAGT 1768
Query 1424 GTTCCACAAACTGATGTCAAGCGTGTACGAATTTGAGCTTGAGACACTTCCGtttttttt 1483
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct 1769 GTTCCACAAACTGATGTCAAGCGTGTACGAATTTGAGCCTGAGTCAATTCCGTTTTTTTT 1828
Query 1484 ---CTTCCGGTTCTTCCGTTGGATTGGATTCGAAGGTGTTTCAGTGATCTCTTTTGGGTT 1540
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1829 TTACTTCCGGTTCTTCCGTTGGATT-----CGAAGGTTTTTCAGTGATCTCTTTTGGGTT 1883
Query 1541 GAGGTTTGTAGTAAGAGTACGTCTGTCTAGTTTGGGATTGTATTTTTTGTTGTTGTTGTT 1600
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1884 GAGGTTTGTACTAAGAGTACGTCTGTCTAGTTTGGGATTGTACTTTTTGTTGTTGTTGTT 1943
Query 1601 AGTTTGTAACTTGTGATGCTTCC 1623
|||||||||||||||||||||||
Sbjct 1944 AGTTTGTAACTTGTGATGCTTCC 1966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684308515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5