BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496576
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63870.2 | Symbols: PP7 | serine/threonine phosphatase 7 | c... 2028 0.0
> AT5G63870.2 | Symbols: PP7 | serine/threonine phosphatase 7 |
chr5:25561160-25563274 REVERSE LENGTH=1539
Length=1539
Score = 2028 bits (1098), Expect = 0.0
Identities = 1254/1328 (94%), Gaps = 16/1328 (1%)
Strand=Plus/Plus
Query 1 GCTAGGTCCAAGATCGAAGCTTTGG-ATTTTGTTTTACAGTTTTAGCTTCA-T-TTA--- 54
||||||||||||||| ||||||||| |||||| || | || | || || | |||
Sbjct 62 GCTAGGTCCAAGATCCAAGCTTTGGAATTTTG---TA-AATTGT--CTCCACTCTTAGCC 115
Query 55 GTTCCAATGGAATCTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAGGTCTCACC 114
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 116 GTTTTAATGGAAACTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAGCTCTCACT 175
Query 115 AACGAGTGGGTACATGGGCTTATGTCGTCTTTCCAATGGTCTTCATGGAATCTACCTCCT 174
||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 176 AACGACTGGGTACATGGGCTTATGTCGTGTTTCGAATGGTCTTCATGGAATCTACCTCCT 235
Query 175 TCCCAGTTACCTTCACTTTTGCCAGTCAGCGTCTTTGATTCCCTCGTCCTCACCGCTTC- 233
||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 236 TCCCAGTTACCTTCACTATTGCCTGTCAACGTCTTTGATTCCCTCGTCCTCACCGC-TCA 294
Query 234 CAAAATCCTCCACAAAGAGCGCAACTGCGTTCATATCGATGGCCTTGATTCTG-AGTCCA 292
||||||||||||||||| || ||||||||||||||||||| ||||| |||| | ||||
Sbjct 295 TAAAATCCTCCACAAAGAACGTAACTGCGTTCATATCGATGATCTTGACTCTGTA-TCCA 353
Query 293 ACGTTGTTGTGGTTGGTGACATTCATGGTCAGCTCCATGACCTTCTCTTCCTATTGAAAG 352
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 354 ACGTTGTTGTGGTTGGTGACATTCATGGTCAGCTTCATGACCTTCTTTTCCTATTGAAAG 413
Query 353 ATACTGGCTTTCCTTGTCAAAACCGGTTTTATGTATTCAACGGCGACTATGTGGATCGTG 412
||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |
Sbjct 414 ATACTGGCTTTCCTTGTCAAAACCGGTGTTATGTTTTCAACGGAGACTATGTGGATCGCG 473
Query 413 GTGCTTGGGGACTCGAGACCTTCCTTGTTCTCTTGTCCTGGAAGGTTCTGATGCCGGACA 472
||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 474 GTGCTTGGGGACTTGAAACCTTCCTTGTTCTCTTGTCCTGGAAGGTTTTGATGCCGGACA 533
Query 473 GAGTCTACCTACTCCGTGGTAATCATGAATCAAAGTATTGTACATCTATGTATGGTTTTG 532
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 534 GAGTCTACCTACTCCGTGGTAATCATGAGTCAAAGTATTGTACATCTATGTATGGTTTCG 593
Query 533 AAAAGGAGGTGCTCACAAAATACGGAGACAAGGGAAAACATGTTTACCGCAAATGCTTGG 592
| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 594 AGAAGGAAGTGCTTACAAAATACGGAGACAAGGGAAAACATGTGTACCGGAAATGTTTGG 653
Query 593 GTTGCTTTGAAGGTCTTCCTTTGGCTTCCATAATTTCTGGACGTGTTTATACAGCACATG 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTTGCTTTGAAGGTCTTCCTTTGGCTTCCATAATTTCTGGACGTGTTTATACAGCACATG 713
Query 653 GAGGGCTTTTCCGCAGCCCAGTCTTGCCTAAGAGAACAACAAGGGGGAAAAAGAACCGTC 712
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 714 GAGGGCTTTTCCGCAGCCCAGTCTTGCCTAAGCGAACAACAAGGGGGAAAAAGAACCGTC 773
Query 713 GGGTAGTTCTTCTGGAACCTGAGCCGAGCTCGTTGAAACTCGGTACCTTAGATGAGTTGA 772
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 774 GGGTAGTTCTTCTGGAACCTGAGCCGAGCTCAATGAAACTCGGTACCTTAGATGAGTTGA 833
Query 773 TGCAAGCTCGAAGATCAGTTCTTGATCCTCCTTGGGAAGGTTCAAACTTGATTCCCGGGG 832
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 834 TGCAAGCTCGAAGATCAGTTCTTGATCCTCCTTGGGAAGGTTCAAACTTGATACCAGGAG 893
Query 833 ACGTTTTATGGTCTGATCCTTCAATGACTCCGGGCCTTTCACCAAATGAACAGAGAGGCA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ACGTTTTATGGTCTGATCCTTCAATGACTCCGGGCCTTTCACCAAATGAACAGAGAGGCA 953
Query 893 TTGGTCTTCTCTGGGGTCCCGATTGTACAGAGGATTTTTTGAAGAAATATGAACTAAAGT 952
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 954 TTGGTCTTCTTTGGGGTCCCGATTGTACAGAGGATTTTTTGAAGAAATATGAACTGAAGT 1013
Query 953 TGATCATCAGATCACATGAAGGTCCAGATGCTAGAGAGAAGAGAACTGGTCTTGGTGGGA 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1014 TGATCATCAGATCACATGAAGGTCCAGATGCTAGAGAGAAGAGAACTGGTCTTGGTGGAA 1073
Query 1013 TGGACAAAGGATATACAATAGACCACAATGTCGAATCCGGAAAGCTTATCACTATTTTCA 1072
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TGGACAATGGATATACAATAGACCACAATGTCGAATCCGGAAAGCTTATCACTATTTTCA 1133
Query 1073 GTGCACCAGACTATCCACAATTCCAAGCAACAGAAGAGAGGTACAAAAACAAAGGAGCAT 1132
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GTGCACCTGACTATCCGCAATTCCAAGCAACAGAAGAGAGGTACAAAAACAAAGGAGCAT 1193
Query 1133 ATATTATTTTGCAGGCGCCTGATTTCTCCGATCCTCAATTTCATAGTTTCGAGGCTGTTA 1192
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1194 ATATTATTTTGCAGGCGCCTGATTTCTCGGATCCTCAATTTCATAGTTTCGAAGCTGTTA 1253
Query 1193 AACCGCGACCAAAGGCGCATCCGTATTATGACTTTGAAAATGTGATTGATTCTGATGATG 1252
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1254 AACCGCGACCAAAGGCGCATCCATATTATGACTTTGAAAATGTCATTGATTCTGATGATG 1313
Query 1253 AGATGGATAAGTCGGCACTGGACACCAATGACGAACAACCAAATCGCTGACCGAAGCTGA 1312
||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1314 AGATGGATAAGTCAGCAATGGACACCAATAACGAACAACCAAATAGCTGACCGAAGCTGA 1373
Query 1313 AAAGGAGT 1320
||||||||
Sbjct 1374 AAAGGAGT 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5