BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496578 Length=859 Score E Sequences producing significant alignments: (Bits) Value AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:255... 708 0.0 AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-assoc... 675 0.0 > AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:25563724-25565434 FORWARD LENGTH=1074 Length=1074 Score = 708 bits (383), Expect = 0.0 Identities = 412/426 (97%), Gaps = 1/426 (0%) Strand=Plus/Plus Query 52 TCG-TAAGTGAAGAAAAGATGGGAAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTT 110 ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 149 TCGATAAGTGAAGAAAAGATGGGGAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTT 208 Query 111 GATCGAGCGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAG 170 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 209 GATCGAGCGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGAAG 268 Query 171 CTTGAGAAAGTAATTGAAGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGA 230 |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 269 CTTGAGAAAGTAATTGAAGCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCGA 328 Query 231 AAGGACAGAGCTTTGTTAGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAA 290 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 329 AAGGACAGAGCTTTGTTAGCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAAGCAA 388 Query 291 GTTGATCAGTGGGTCATCAATGTTGAACAACAATTAGCAGATATTGAACTTACGAGCAAA 350 || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 389 GTGGATCAATGGGTCATCAATGTTGAACAACAATTAACAGATATTGAACTTACGAGCAAA 448 Query 351 CAAAAGGCTGTGTTTGAGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGC 410 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 449 CAAAAGGCAGTGTTTGAGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGC 508 Query 411 GAGTTGGACCTTGATGATGTTCAAAAACTTATGGATGATACTGCTGATGCTAAAGCTTAT 470 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 509 GAATTGGACCTTGATGATGTTCAAAAACTAATGGATGATACTGCTGATGCTAAAGCTTAT 568 Query 471 CAAGAT 476 |||||| Sbjct 569 CAAGAT 574 Score = 494 bits (267), Expect = 7e-139 Identities = 358/398 (90%), Gaps = 22/398 (6%) Strand=Plus/Plus Query 477 GAGCTGAATGCTAT-TCTGGGAGAGAAGCTATCAGCAGAGGATGAAGAAGATGTATTAGC 535 |||||||| ||||| | |||||||||| ||||||||||||||||| |||||| ||||||| Sbjct 647 GAGCTGAACGCTATAT-TGGGAGAGAAACTATCAGCAGAGGATGAGGAAGATATATTAGC 705 Query 536 AGAATTTGACAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTCAAGTGCCTACGAA 595 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 706 AGAATTTGACAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTGAAGTGCCTACAAA 765 Query 596 GGAGTCCGAAGAATCTGACAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGC 655 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 766 GGAGTCTGAAGAATCTGAGAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGC 825 Query 656 TTCCAATGCAGAAATCACACCAGCTGAATCCGCCACAAAAACAAAAGTTCTCGAAGAACC 715 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 826 TTCCAATGCGGAAATCACACCAGCTGAGTCCGCCACAAAAACAAAAGTTCTCGAAGAACC 885 Query 716 TTTGCCGGCTTGAGCTAGAAGAAACTGATCAACAAGACGATTTCATCATTCTTTTAGCAC 775 ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| || Sbjct 886 TTTGCCGGCTTGAGCTAGAAGAAACTGATCAGCAATACGATTTTATCATTCTTTTACCAG 945 Query 776 ttttttttttCTTTATTGTGCTCTTTGAAGTTTTCTGTGTAA------A---C-C-GT-- 822 |||||| |||| ||||||| ||||||||||||| ||| | | | || Sbjct 946 TTTTTT----CTTTG--GTGCTCTCTGAAGTTTTCTGTATAATCTTTGAAGTCGCTGTCA 999 Query 823 TT-GTAAAGAACAAGATATATTTGGAATCCCATTGTGT 859 || ||||||||||||||||||||||||||||||||||| Sbjct 1000 TTTGTAAAGAACAAGATATATTTGGAATCCCATTGTGT 1037 > AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-associated protein 20.2 | chr5:2876753-2878700 FORWARD LENGTH=1040 Length=1040 Score = 675 bits (365), Expect = 0.0 Identities = 528/606 (87%), Gaps = 14/606 (2%) Strand=Plus/Plus Query 68 GATGGGAAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCT 126 |||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 44 GATGGGGAATTTATTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTCT 102 Query 127 CTCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAGCTTGAGAAAGTAATTG 186 |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| Sbjct 103 CTCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTG 162 Query 187 AAGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGAGCTTTGT 246 |||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 163 AAGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGT 222 Query 247 TAGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAAGTTGATCAGTGGGTCA 306 ||||||||| ||| ||||| || ||||||||||| ||||||||||| ||||||||| ||| Sbjct 223 TAGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCA 282 Query 307 TCAATGTTGAACAACAATTAGCAGATATTGAACTTACGAGCAAACAAAAGGCTGTGTTTG 366 ||||||| ||||||||||| |||||||| |||||||| ||||| ||||| || || |||| Sbjct 283 TCAATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAAAAAGCAGTCTTTG 342 Query 367 AGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGCGAGTTGGACCTTGATG 426 ||||||||||||| ||||| | ||| |||||||| ||||| |||||| | ||||||||| Sbjct 343 AGAGCTTAAAGCAAGGTAACAATGCAATTAAGGCGATTCAGAGCGAGGTCAACCTTGATG 402 Query 427 ATGTTCAAAAACTTATGGATGATACTGCTGATGCTAAAGCTTATCAAGATGAGCTGAATG 486 ||||||||||||| |||||||| ||||| || || || |||||||| ||||| |||| || Sbjct 403 ATGTTCAAAAACTGATGGATGACACTGCCGAGGCCAAGGCTTATCAGGATGAACTGAGTG 462 Query 487 CTAT-TCTGGGAGAGAAGCTATCAGCAGAGGATGAAGAAGATG-TATTAGCAGAATTTGA 544 | || | | || ||||| |||||||| || ||||||||||| | | ||||||||||| || Sbjct 463 CCATAT-TAGGTGAGAAACTATCAGCGGAAGATGAAGAAGA-GATCTTAGCAGAATTCGA 520 Query 545 CAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTCAAGTGCCTACGA-AGGAG-TC- 601 |||||||||||||| ||| |||||||| || |||||| |||||||||||| || || || Sbjct 521 CAACCTAGAAAGTCTGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAG-AGCTCA 579 Query 602 --C--GAAGAATCTGACAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGCTT 657 | |||||| | || || ||||||| || ||||||||||||||| | || ||||||| Sbjct 580 TGCCTGAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTT 639 Query 658 CCAATG 663 |||||| Sbjct 640 CCAATG 645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41895278598 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5