BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496578
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:255... 708 0.0
AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-assoc... 675 0.0
> AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:25563724-25565434
FORWARD LENGTH=1074
Length=1074
Score = 708 bits (383), Expect = 0.0
Identities = 412/426 (97%), Gaps = 1/426 (0%)
Strand=Plus/Plus
Query 52 TCG-TAAGTGAAGAAAAGATGGGAAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTT 110
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 149 TCGATAAGTGAAGAAAAGATGGGGAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTT 208
Query 111 GATCGAGCGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAG 170
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 209 GATCGAGCGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGAAG 268
Query 171 CTTGAGAAAGTAATTGAAGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGA 230
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 269 CTTGAGAAAGTAATTGAAGCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCGA 328
Query 231 AAGGACAGAGCTTTGTTAGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAA 290
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 329 AAGGACAGAGCTTTGTTAGCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAAGCAA 388
Query 291 GTTGATCAGTGGGTCATCAATGTTGAACAACAATTAGCAGATATTGAACTTACGAGCAAA 350
|| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 389 GTGGATCAATGGGTCATCAATGTTGAACAACAATTAACAGATATTGAACTTACGAGCAAA 448
Query 351 CAAAAGGCTGTGTTTGAGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGC 410
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 CAAAAGGCAGTGTTTGAGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGC 508
Query 411 GAGTTGGACCTTGATGATGTTCAAAAACTTATGGATGATACTGCTGATGCTAAAGCTTAT 470
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 509 GAATTGGACCTTGATGATGTTCAAAAACTAATGGATGATACTGCTGATGCTAAAGCTTAT 568
Query 471 CAAGAT 476
||||||
Sbjct 569 CAAGAT 574
Score = 494 bits (267), Expect = 7e-139
Identities = 358/398 (90%), Gaps = 22/398 (6%)
Strand=Plus/Plus
Query 477 GAGCTGAATGCTAT-TCTGGGAGAGAAGCTATCAGCAGAGGATGAAGAAGATGTATTAGC 535
|||||||| ||||| | |||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 647 GAGCTGAACGCTATAT-TGGGAGAGAAACTATCAGCAGAGGATGAGGAAGATATATTAGC 705
Query 536 AGAATTTGACAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTCAAGTGCCTACGAA 595
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 706 AGAATTTGACAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTGAAGTGCCTACAAA 765
Query 596 GGAGTCCGAAGAATCTGACAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGC 655
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GGAGTCTGAAGAATCTGAGAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGC 825
Query 656 TTCCAATGCAGAAATCACACCAGCTGAATCCGCCACAAAAACAAAAGTTCTCGAAGAACC 715
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 826 TTCCAATGCGGAAATCACACCAGCTGAGTCCGCCACAAAAACAAAAGTTCTCGAAGAACC 885
Query 716 TTTGCCGGCTTGAGCTAGAAGAAACTGATCAACAAGACGATTTCATCATTCTTTTAGCAC 775
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||
Sbjct 886 TTTGCCGGCTTGAGCTAGAAGAAACTGATCAGCAATACGATTTTATCATTCTTTTACCAG 945
Query 776 ttttttttttCTTTATTGTGCTCTTTGAAGTTTTCTGTGTAA------A---C-C-GT-- 822
|||||| |||| ||||||| ||||||||||||| ||| | | | ||
Sbjct 946 TTTTTT----CTTTG--GTGCTCTCTGAAGTTTTCTGTATAATCTTTGAAGTCGCTGTCA 999
Query 823 TT-GTAAAGAACAAGATATATTTGGAATCCCATTGTGT 859
|| |||||||||||||||||||||||||||||||||||
Sbjct 1000 TTTGTAAAGAACAAGATATATTTGGAATCCCATTGTGT 1037
> AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-associated
protein 20.2 | chr5:2876753-2878700 FORWARD LENGTH=1040
Length=1040
Score = 675 bits (365), Expect = 0.0
Identities = 528/606 (87%), Gaps = 14/606 (2%)
Strand=Plus/Plus
Query 68 GATGGGAAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCT 126
|||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 44 GATGGGGAATTTATTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTCT 102
Query 127 CTCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAGCTTGAGAAAGTAATTG 186
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 103 CTCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTG 162
Query 187 AAGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGAGCTTTGT 246
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 163 AAGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGT 222
Query 247 TAGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAAGTTGATCAGTGGGTCA 306
||||||||| ||| ||||| || ||||||||||| ||||||||||| ||||||||| |||
Sbjct 223 TAGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCA 282
Query 307 TCAATGTTGAACAACAATTAGCAGATATTGAACTTACGAGCAAACAAAAGGCTGTGTTTG 366
||||||| ||||||||||| |||||||| |||||||| ||||| ||||| || || ||||
Sbjct 283 TCAATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAAAAAGCAGTCTTTG 342
Query 367 AGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGCGAGTTGGACCTTGATG 426
||||||||||||| ||||| | ||| |||||||| ||||| |||||| | |||||||||
Sbjct 343 AGAGCTTAAAGCAAGGTAACAATGCAATTAAGGCGATTCAGAGCGAGGTCAACCTTGATG 402
Query 427 ATGTTCAAAAACTTATGGATGATACTGCTGATGCTAAAGCTTATCAAGATGAGCTGAATG 486
||||||||||||| |||||||| ||||| || || || |||||||| ||||| |||| ||
Sbjct 403 ATGTTCAAAAACTGATGGATGACACTGCCGAGGCCAAGGCTTATCAGGATGAACTGAGTG 462
Query 487 CTAT-TCTGGGAGAGAAGCTATCAGCAGAGGATGAAGAAGATG-TATTAGCAGAATTTGA 544
| || | | || ||||| |||||||| || ||||||||||| | | ||||||||||| ||
Sbjct 463 CCATAT-TAGGTGAGAAACTATCAGCGGAAGATGAAGAAGA-GATCTTAGCAGAATTCGA 520
Query 545 CAACCTAGAAAGTCAGCTTATTGTTGATGAGATGCCTCAAGTGCCTACGA-AGGAG-TC- 601
|||||||||||||| ||| |||||||| || |||||| |||||||||||| || || ||
Sbjct 521 CAACCTAGAAAGTCTGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAG-AGCTCA 579
Query 602 --C--GAAGAATCTGACAAGCTGGATCTTCCGGATGTGCCAACAAAAACTCCTGTCGCTT 657
| |||||| | || || ||||||| || ||||||||||||||| | || |||||||
Sbjct 580 TGCCTGAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTT 639
Query 658 CCAATG 663
||||||
Sbjct 640 CCAATG 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5