BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496591
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63980.1 | Symbols: SAL1, ALX8, ATSAL1, HOS2, FRY1, RON1 | I... 2025 0.0
> AT5G63980.1 | Symbols: SAL1, ALX8, ATSAL1, HOS2, FRY1, RON1 |
Inositol monophosphatase family protein | chr5:25609812-25611933
FORWARD LENGTH=1383
Length=1383
Score = 2025 bits (1096), Expect = 0.0
Identities = 1203/1254 (96%), Gaps = 10/1254 (1%)
Strand=Plus/Plus
Query 1 ATATTTATCTTCTTG-AAAGCCGAAACATGTCTATAAATTGTTTTCGAACAGCCAAGGCT 59
||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||
Sbjct 6 ATATTTATCTTCTTGAAAAG-CGAATGATGTCTATAAATTGTTTTCGAACAGCGAAGGCT 64
Query 60 CCGCTTCAATCATTTGTAGCAGTAAGAACGAATTCGAGACCTAGAAATTCATCGAACCGT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CCGCTTCAATCATTTGTAGCAGTAAGAACGAATTCGAGACCTAGAAATTCATCGAACCGT 124
Query 120 CTCGCTTCTGTCTTCGGAAGCAAG---TCTTCTCCTTCATTTGTTACTCTCAGAGTTGTT 176
|||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 125 CTCGTTTCTGTATTCGGACGCAAGTCTTCTTCTCCTTCATTTGTTACTCTCAGAGTTGTT 184
Query 177 TCATCGATGGCTTACGAGAAAGAGCTTGATGCTGCTAAAAAAGCTGCTTCACTCGCTGCT 236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 185 TCATCGATGGCTTACGAGAAAGAGCTTGATGCTGCTAAGAAAGCTGCTTCACTCGCTGCT 244
Query 237 CGTCTCTGTCAGAAAGTTCAAAAGGCTTTGTTGCAATCGGATGTCCAATCAAAATCTGAT 296
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 245 CGTCTCTGTCAGAAAGTTCAAAAGGCTTTGTTGCAATCAGATGTGCAATCAAAATCTGAT 304
Query 297 AAAAGTCCAGTGACCGTTGCTGATTATGGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 AAAAGTCCAGTGACCGTTGCTGATTATGGTTCACAAGCAGTTGTTAGTTTAGTCTTAGAA 364
Query 357 AAGGAGCTCAGTTCTGAACCCTTTTCATTGGTGGCTGAGGAGGACTCAGGCGATCTACGC 416
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 365 AAAGAGCTCAGTTCTGAACCCTTTTCATTGGTGGCTGAAGAGGACTCAGGCGATCTACGC 424
Query 417 AAGGACT-GTTCTCGGGATACGCTGGAGCGCATCACGAAACTCGTGAACGACACTTTGGC 475
||||| | |||||| |||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 425 AAGGA-TGGTTCTCAGGATACTCTGGAGCGCATCACAAAACTCGTGAACGACACTTTGGC 483
Query 476 TACTGAGGAATCGTTTGGTGGTTCTACTTTGTCTACAGATGATCTACTTAGAGCCATTGA 535
||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 484 TACCGAGGAATCGTTTAATGGCTCTACTTTGTCTACTGATGATCTACTTAGAGCCATTGA 543
Query 536 CTGTGGAACATCTGAAGGTGGTCCAAATGGCCGACATTGGGTCTTGGATCCTATTGATGG 595
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 544 CTGTGGAACATCTGAAGGTGGTCCAAATGGTCGACACTGGGTCTTGGATCCAATTGATGG 603
Query 596 CACTAAAGGATTTCTGAGAGGAGATCAATACGCAGTAGCGCTAGGATTGCTGGAGGAAGG 655
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 604 CACTAAAGGATTTCTGAGGGGAGATCAATACGCAGTAGCACTAGGATTGCTCGAGGAAGG 663
Query 656 GAAAGTAGTTTTAGGTGTGCTTGCTTGTCCAAACTTGCCGTTAGCTTCCATAGCAGGAAA 715
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 664 GAAAGTAGTTTTAGGTGTGCTTGCTTGTCCAAACTTGCCGTTAGCATCCATAGCAGGAAA 723
Query 716 CAACAAGAACAACAAATCTTCGTCAGATGAAATTGGATGCCTCTTCTTTGCTACAATTGG 775
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 724 CAACAAG---AACAAATCTTCGTCAGACGAAATTGGATGCCTCTTCTTTGCTACAATTGG 780
Query 776 TTCAGGGACATATATGCAGCTCCTAGATTCGAAATCTTCTCCTGTCAAAGTACAAGTCTC 835
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 781 TTCAGGGACATATATGCAGCTCCTAGATTCAAAATCTTCTCCTGTAAAAGTGCAAGTCTC 840
Query 836 TAGTGTGGAGAATCCTGAAGAGGCATCGTTCTTCGAGTCATTTGAAGGAGCTCATTCTCT 895
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 841 TAGTGTTGAGAATCCTGAAGAGGCATCGTTCTTCGAGTCATTCGAAGGAGCTCACTCTCT 900
Query 896 TCACGATTTATCCAGCTCCATTGCCAATAAACTTGGTGTCAAAGCTCCACCTGTCCGTAT 955
|| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 901 ACATGACTTATCCAGCTCCATTGCCAATAAACTCGGTGTCAAAGCTCCACCAGTCCGTAT 960
Query 956 CGATAGCCAAGCAAAGTATGGAGCTTTATCAAGAGGAGATGGAGCTATATACTTACGGTT 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGATAGCCAAGCAAAGTATGGAGCTTTATCAAGAGGAGATGGAGCTATATACTTACGGTT 1020
Query 1016 TCCTCATAAAGGATACCGCGAAAAGATTTGGGACCATGTTGCTGGTGCTATAGTTGTTAC 1075
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1021 TCCTCATAAAGGATACCGCGAAAAGATTTGGGACCATGTCGCTGGTGCTATAGTTGTTAC 1080
Query 1076 AGAGGCGGGTGGAATAGTGACAGACGCAGCAGGAAAGCCACTGGATTTCTCGAAAGGGAA 1135
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1081 AGAGGCGGGTGGAATAGTGACAGATGCAGCAGGAAAGCCACTGGATTTCTCGAAAGGGAA 1140
Query 1136 GTATCTTGATTTGGACACAGGCATTATCGTTGCTAACGAGAAGCTAATGCCTCTGCTTTT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GTATCTTGATTTGGACACAGGCATTATCGTTGCTAACGAGAAGCTAATGCCTCTGCTTTT 1200
Query 1196 GAAAGCAGTTCGTGACTCCATAGCTGAGCAAGAGAAAGCTTCAGCTCTCTGATT 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAAAGCAGTTCGTGACTCCATAGCTGAGCAAGAGAAAGCTTCAGCTCTCTGATT 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61395266535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5