BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496593
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63990.1 | Symbols: | Inositol monophosphatase family prote... 2032 0.0
> AT5G63990.1 | Symbols: | Inositol monophosphatase family protein
| chr5:25613258-25615880 FORWARD LENGTH=1347
Length=1347
Score = 2032 bits (1100), Expect = 0.0
Identities = 1263/1338 (94%), Gaps = 25/1338 (2%)
Strand=Plus/Plus
Query 1 AGTTGCTTCAGAGTCGCGAGAGGTTTTT-CATTCATATCATAAAAATCGATTC-TTGAGA 58
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 21 AGTTGCTTCAGAGTCGCGAGAGGTTTTTCCATTCATATCATAAAAATCGATTCTTTCAGA 80
Query 59 GATTttcttcttcatcttcgt-cttcttcgtttcttcttcAGCC--TTTTCAATGTCTTA 115
|||||||||||||| |||||| | | || ||| | ||| | || ||||||||||||||
Sbjct 81 GATTTTCTTCTTCAACTTCGTGGTAC-TC-TTT-TGCTTTACCCATTTTTCAATGTCTTA 137
Query 116 CGATGAGATGCTTTCTGCTGCCAAGAAAGCTGTCTCTCTCGCTGCTCGTCTCAGCAACCA 175
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 138 CGATGAGATGCTTTCTGCTGCGAAGAAAGCTGTTTCTCTCGCTGCTCGTCTCAGCAACGA 197
Query 176 AGTGAGGAAATCTCTGTTGGTATCTGACGTTTGGAACAAATCAGATGAGAGTCCTGTTAC 235
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 198 AGTGAGGAAATCTCTGTTGGTAACTGACGTTTGGAACAAATCAGATGATAGTCCTGTTAC 257
Query 236 TGTTGCTGATTATGGTTCGCAGGCCGTGGTTAGCCTTGTACTCGAAAGGGAACTCCTGAA 295
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 258 TGTTGCTGATTATGGTTCGCAGGCGGTGGTTAGCCTTGTACTGGAAAGGGAACTCCAGAA 317
Query 296 TGAACCTGTGTCATTAGTAGCTGAAGAGGATTCTGGTGAGCTAAGGAAGATTGCTGCTGA 355
|||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 318 TGAACCTGTGTCTTTAGTGGCTGAAGAGGATTCTGGTGAGTTAAGGAAGATTGCTGCTGA 377
Query 356 GACTGTTTTGGCACGTATTACAGAGCTTGTGAAAGATACTCTTGCCAGTGATGAATCATA 415
||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 378 GACCGTTTTGGCTCGTATTACAGAGCTTGTCAAAGATACTCTTGCAAGTGATGAATCATA 437
Query 416 TGC---TGCTTCTCCTTTGTCTTCCGATGATGTGCTCAACGCTATAGACCGTGGTAAATC 472
||| ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 438 TGCTATTGCTTCTCCTTTGACTTCGGATGATGTGCTCAACGCTATAGATCGTGGTAAATC 497
Query 473 AGAAGGAGGTCCTATGGGTCGCCATTGGATCTTGGATCCTATAGGTGGCACTAGAGGATT 532
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 498 AGAAGGAGGTCCTAAGGGTCGCCACTGGATCTTGGATCCTATTGGTGGCACTAGAGGATT 557
Query 533 TATAAGAGGAGAACAATATGCAATAGGATTAGCATTGTTGGTGGATGGCAAAGTAGTACT 592
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 558 TATAAGAGGAGAACAATATGCAATAGGATTAGCATTGTTGGTGGAAGGCAAAGTAGTACT 617
Query 593 AGGTGTAATGGCTTGTCCTAAGCTTCCATTGGCATCAACTGCTGCTGGTAACACACTCAA 652
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 618 AGGTGTAATGGCTTGTCCTAAGCTTCCATTGGCATCAA---CTGCTGGTAATGCACTCAA 674
Query 653 GTCTTTACCTGAAAAAGTTGGTTGCCTTTTCTATGGTTCGGTTGGCAATGGGACTTATGT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GTCTTTACCTGAAAAAGTTGGTTGCCTTTTCTATGGTTCGGTTGGCAATGGGACTTATGT 734
Query 713 CCAGTCTCTCAGTGTTGACTCTCCTCCTGTGAAGGTGGAGGTAAGCAGCATAGATGATCC 772
||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 735 CCAGTCTCTCAGTGTCGACTCTCTTCCTGCGAAGGTGGAGGTTAGCAGCATAGATGATCC 794
Query 773 CGCGAAAGCGAGTTTCTTCGAGTCATACCACACACCTGTCCCCATCCATAACACCATTGC 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TGCGAAAGCGAGTTTCTTCGAGTCATACCACACACCTGTCCCCATCCATAACACCATTGC 854
Query 833 TACGAAACTGGGGATAAAAGAATCGCCAATCAAGATCAACAGTCAGACAAAGTATGCAGC 892
||||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 855 TACGAAATTGGGGATAAAAGAATCTCCAATCAAGATCAACAGCCAGACTAAGTATGCAGC 914
Query 893 TTTATCTAGAGGAGATGGAGAGGTGTACTTGAGGTTTACTCGCAAAGCAAGACCCGAATC 952
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 915 TTTATCTAGAGGAGATGGAGAGGTTTACTTGAGGTTTACTCGCAAAGCAAGACCCGAATC 974
Query 953 AATATGGAATCACGCTGCTGGCTCAATCATCGTTTCAGAAGCGGGAGGGAAAGTGACTGA 1012
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 975 AATATGGAATCACGCTGCTGGCTCAATCATTGTTTCAGAAGCAGGAGGGAAAGTGACTGA 1034
Query 1013 TGCAGCAGGGAATCCGTTGGACTTTTCGAAAGGGAAGTATCTTGATTACAAGAGAGGAAT 1072
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TGCAGCAGGGAATCCATTGGACTTTTCGAAAGGGAAGTATCTTGATTACAAGAGAGGAAT 1094
Query 1073 TGTGGTTACGACGCAGAAACTGTTGCCAAGGCTTTTGATAGCAGTAAGAGAATCAATTaa 1132
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1095 CGTCGTTACGACGCAGAAACTGTTGCCAAGGCTTTTAACAGCAGTAAGAGAATCAATTAA 1154
Query 1133 agaagaagaagaggaagaagaaaaagCAGCTTCTCTGAAACTTCACTAACACGCAACTGT 1192
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1155 AGAAGAAGAAGAGGAAGAAGAAAAAGCTGCTTCTCTAAAACTTCACTAACACGCAACTGT 1214
Query 1193 AATATACTTATTATTGTTGTCTTTGGGTATACTCTGTTGTCT--GTGTTTTTCACACAGT 1250
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1215 AATATACTTATTATTGTTGTCTTTGGGTATACTCTGTTGTCTCTGTGTTTTTCACA--GT 1272
Query 1251 CTATTTATTGAAAACCAGAAACaaaaaaaaaaaaTACTCACCTTTGATATATATATAAGA 1310
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 1273 CTATTTATTGAAAACCAGAAACAAAAAAAAAA----CTCACCTTTGATATATATA-A-GA 1326
Query 1311 AAACACTAATTCTCTTTT 1328
|| |||||||||||||||
Sbjct 1327 AA-CACTAATTCTCTTTT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65361109590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5