BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496595
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1373 0.0
> AT5G64010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr5:25618606-25620179
REVERSE LENGTH=915
Length=915
Score = 1373 bits (743), Expect = 0.0
Identities = 868/925 (94%), Gaps = 21/925 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAGTTTCGAGAAATTCGAACCCATATTTGGCGAAGTCGTACCCGAACGTTCGGAT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGAGTTTCGAGAAATTCGAACCCATATTTGGAGAAGTCGTACCCGAACGTTCGGAT 60
Query 61 CCGGGTTCGGGTCTTCTCCGGCGATGTCTCTTCCACGTCTACGCTTCCGATTCGTATAAC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGGGTTCGGGTCTACTCCGGCGATGTCTCTTCCACGTCTACGCTTCCGATTCGTATAAC 120
Query 121 TTAACAGTCCATGTCACTGACTTCGTCTCCGGCGTCTGGGCGACGATCCTCTCCGTCTCG 180
|||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 121 TTAACAGTTCATGTCACTGACTTCATCTCCGGTGTCTGGACGACGATCCTCTCCGTCTCG 180
Query 181 CAGCTAGACGATATGAGGGATACTGTGGGGATTGGTGGTTCGTGGTCAGAGTTCCTCGAT 240
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 181 CAGCTAGACGATATGAGGGATACTGTTGGGATTGGTGGTTCGTGGTCTGAGTTCGTCGAT 240
Query 241 TATACTGTTGCTTCCTTGAAATCCGACAATGTGAAGCTTCTCTTGGGAGATAA-TTCAGT 299
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 TATACTGTTGCTTCCTTGAAATCCGACAATGTGAAGCTTCTCTTGGGAGA-AACTTCAGT 299
Query 300 TTCAAATGGTGTCAAAACTGCGCGATTAGTTTCTCAGAAGGCCAAAGGAATGCCTCGCAT 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TTCAAATGGTGTCAAAACTGCGCGATTAGTTTCTCAGAAAGCCAAAGGAATGCCTCGCAT 359
Query 360 AA-TAGTTCCTCTAACAATGATGGTGGACTCATCTGCTAGTGAAGCAATGGCAAATCTGT 418
|| | |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 AAAT-GTTCCTTTAACAAAGATGGTGGAATCATCTGCTAGTGAAGCAATGGCAAATCTGT 418
Query 419 CTCTTGAGTTGTTCAGAGCATTCAAGAGCAAGCAGCACCTACAAGGAGAAGTGAGTTCTT 478
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 CTCTCGAGTTGTTCAGAGCATTCAAGAGCAAGCAGCACCTACAAGGAGAAGTGAGTTTTT 478
Query 479 CAGCTGCAGCAACTGATGAAAAGGATAAGAGGGATGCTACCCATAACCAAGTGGAACGAT 538
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 479 CAGCTGCAGCAACTGATGAAAAGGATAAGAGGGATGCTACCTATAACCAACTGGAACGAT 538
Query 539 GCTCTGGAAAGCTAGATGTTATGGCTCCATCAACAGATAACCGGCAAGACTCTCCCGCCA 598
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 539 ACTCTAGAAAGCTAGATGTTATGGCTCCATCAACAAATAACCGGCAAGACTCTCCCGCCA 598
Query 599 AGCAATCTGCCCGAGAAGGTAACACAACAAAACC-TGTTAAACGTGTACCTGCTCACCGG 657
| |||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||
Sbjct 599 ACCAATCTGCCCGAGAAGCTAACACAA-AAAACCCTGTGAAACGAGTACCTGCTCACCGA 657
Query 658 AGAACCCGTAAACGGGGTGCCCTTCTGCAGGATTCAGAAGAAGAGGATGGCTGATTGGAA 717
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAACCCGTAAACGGGGTGCTCTTCTGCAGGATTCAGAAGAAGAGGATGGCTGATTGGAA 717
Query 718 CAGCCGACACTTAACAAACTGAATCGCCTGGGGAGTTATGCTTTATGCTCATGATAATTT 777
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAGCC-----TGAACAAACTGAATCGCCTGGGGAGTTATGCTTTATGCTCATGATAATTT 772
Query 778 CCCAGGTCCTT--TTTTA---CTCCTCTTTTGGTAATTCGATTTTCTGAAAAGAATCTGT 832
||||||||||| |||| ||||||||||||| ||||| |||| | ||||||||||||
Sbjct 773 CCCAGGTCCTTCCTTTTTTTTCTCCTCTTTTGGTGATTCGTTTTTGTAAAAAGAATCTGT 832
Query 833 AAGGTTAACATAGATTCGTTGTGGAAACATAT-T-AGAAGTTTTTGAAAGTTG-AAAACG 889
||||||||| ||||||| ||||||| |||||| | |||||||||||||||||| |||| |
Sbjct 833 AAGGTTAACTTAGATTCCTTGTGGACACATATATTAGAAGTTTTTGAAAGTTGGAAAA-G 891
Query 890 GAAGTAAAATCGAATCCTCCTTAGT 914
||||||||||||||| ||||||||
Sbjct 892 -AAGTAAAATCGAATCTTCCTTAGT 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44658156683
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5