BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496596
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64020.1 | Symbols: TBL14 | TRICHOME BIREFRINGENCE-LIKE 14 |... 2305 0.0
AT2G37720.1 | Symbols: TBL15 | TRICHOME BIREFRINGENCE-LIKE 15 |... 833 0.0
AT3G10282.1 | Symbols: | unknown pseudogene | chr3:3181970-318... 289 7e-77
AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein... 233 3e-60
> AT5G64020.1 | Symbols: TBL14 | TRICHOME BIREFRINGENCE-LIKE 14
| chr5:25620308-25622573 REVERSE LENGTH=1683
Length=1683
Score = 2305 bits (1248), Expect = 0.0
Identities = 1408/1483 (95%), Gaps = 20/1483 (1%)
Strand=Plus/Plus
Query 1 AACGTTGAAATTGATGAGTCACTCGTACAATGGAGATTGTTTATTGACCAACGAACATGT 60
||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 4 AACGTTGAATTTGATGAGTCACTCGTACAATGAATATTGTTTATTGACCAACGAACATGT 63
Query 61 GAGAGATCCAAATTCAGAGGTGGATTCCTAA-TTGCTTGCTCTCCAGATCTACACTTCAC 119
||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct 64 GAGAGATCCAAATTCGGAGGGGGATTCGTAATTTGCTTGCTCTCCAGATCTACACTTCAC 123
Query 120 TATTCTTGCTCGTTGAAGATCCAATCCATCATCATCAATCGTCTCCGGATCTTGAAC-T- 177
||| |||||||||||||||||| | ||||||||||||||| |||||||||||||| |
Sbjct 124 TATCCTTGCTCGTTGAAGATCC-A---ATCATCATCAATCGTTTCCGGATCTTGAACTTA 179
Query 178 ------T-------AGCTTTCTTTGTTGAGAGAGTTGATGTTATCTCTAAGATGTTTGGT 224
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACAACATAGCAAGGAGCTTTCTTTGTTGAGAGAGTTGATGTTATCTCTAAGATGTTTGGT 239
Query 225 GGAAAAAGTCACATACTCAGAGGGAGTGTATCACTTGCCTTGATTATCCTCATTCTTTTG 284
||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 240 GGAAAAAGTCATATACTCAGAGGGAGTGTATCACTGGCCTTGATCGTCCTTATTCTTTTG 299
Query 285 GTGATTATACTCCTGATTTCCGAGGAAAACCCGCTTCGTGCTTCTCTCTTTGAAGTAAAA 344
|| |||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 300 GTCATTATACTCCTGGTTTCTGAGGAAAACCCGCTTCGTGATTCTCTCTTTGAAGTAAAA 359
Query 345 CGTCAGTTttcatcttcttcttcttcatcttcttcAGTTTGTAACTTTGCAAAGGGAAAA 404
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 CGTCAGTTTTCATCTTCTTCTTCTTCTTCTTCTTCAGTTTGTAACTTTGCAAAGGGAAAA 419
Query 405 TGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTTTGAATGTAAACAATGGTTATCA 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTTTGAATGTAAACAATGGTTATCA 479
Query 465 ACAATGTGGTCATGTAGAATAATGGGCAGACCCGATTTCTCATTTGAGGGTTATCGGTGG 524
| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 480 TCCATGTGGTCATGTAGAATAATGGGCAGACCCGATTTCTCATTTGAGGGTTACCGTTGG 539
Query 525 CAGCCAGAAGGTTGCAACATGCCACAGTTTGACAGATTCACTTTCTTGACAAGAATGCAG 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAGCCAGAAGGTTGCAACATGCCACAGTTTGACAGATTCACTTTCTTGACAAGAATGCAG 599
Query 585 AACAAGACGATAGCATTTATAGGAGACTCACTGGGACGGCAACAGTTTCAATCCCTGATG 644
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 600 AACAAGACGATAGCATTTATAGGAGACTCATTGGGGCGGCAACAGTTTCAATCCCTAATG 659
Query 645 TGTATGGCCAGTGGTGGTGAAGATAGCCCAGAGGTTCAAAACGTGGGATGGGAGTACGGT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTATGGCCAGTGGTGGTGAAGATAGCCCAGAGGTTCAAAACGTGGGATGGGAGTACGGT 719
Query 705 CTGGTGAAAGCCAAAGGAGCTCTCCGTCCTGATGGTTGGGCTTATCGGTTCCCAACCACA 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTGGTGAAAGCCAAAGGAGCTCTCCGTCCTGATGGTTGGGCTTATCGGTTCCCAACCACA 779
Query 765 AACACAACGATCTTGTATTATTGGTCAGCTAGTTTATCAGATTTGGTACCAATGAACAAC 824
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 780 AACACGACGATCTTGTATTATTGGTCAGCTAGCTTATCAGATTTGGTACCCATGAACAAT 839
Query 825 ACAGATCCACCTAGTCTTACTGCAATGCATCTGGACCGTCCACCAGCATTCATGAGAAAC 884
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 840 ACAGATCCACCTAGTCTTACTGCAATGCATCTAGATCGTCCACCAGCATTCATGAGAAAC 899
Query 885 TACCTTCACCGTTTCGATGTATTGGTTCTGAACACCGGTCACCATTGGAACAGAGGGAAG 944
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 900 TACCTTCACCGTTTCGATGTATTGGTTCTAAACACTGGTCACCATTGGAACAGAGGTAAG 959
Query 945 ATCGAAGGAAACCATTGGGTGATGCATGTAAATGGAACACAGGTCGAAGGCGAATATCTC 1004
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATTGAAGGAAACCATTGGGTGATGCATGTAAATGGAACACAGGTCGAAGGCGAATATCTC 1019
Query 1005 AAAGATATCAGAAACGCAAAGGATTTTACAATACACAGCGTTGTGAAGTGGCTCGATGCA 1064
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 AAAGATATCAGAAACGCCAAGGATTTTACAATACACAGCGTTGCGAAGTGGCTCGATGCA 1079
Query 1065 CAGCTTCCGTTGCATCCGCGGTTGAAAGCTTTCTTCAGGACAATTTCTCCGAGGCATTTT 1124
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1080 CAGCTTCCATTGCATCCGCGGTTGAAAGCTTTCTTTAGGACAATTTCTCCGAGGCATTTT 1139
Query 1125 AAAAACGGAGATTGGAATACTGGTGGAAACTGTAACAACACGGTCCCTTTGTCTAGAGGA 1184
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 AAAAACGGAGATTGGAATACAGGTGGAAACTGTAACAACACGGTTCCTTTGTCTAGAGGC 1199
Query 1185 AGCGAAATCACAGGCGATGATGGATCGATTGATGCAACAGTCGAGAGTGCTGTGAACGGG 1244
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1200 AGCGAAATCACAGGGGATGATGGATCGATCGATGCAACAGTTGAGAGTGCTGTGAACGGG 1259
Query 1245 ACAAGGATCAAAATTCTTGACATAACTGCACTTTCTGAGCTAAGAGATGAAGCTCATATC 1304
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1260 ACAAGGATCAAGATTCTTGACATAACTGCACTTTCTGAGCTAAGAGACGAAGCTCATATC 1319
Query 1305 TCAGGGTCTAAACTCAAACCCCGCAAACCAAAGAAGGCGAGTAACGTGACTTCAACTCCA 1364
||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct 1320 TCAGGGTCTAAACTCAAACCCCGAAAACCGAAGAAGGCAAGTAACGTGACCTCAACTCCA 1379
Query 1365 ACGATCAATGATTGCTTGCATTGGTGCTTACCAGGGATCCCAGATACTTGGAATGAACTT 1424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ACGATCAACGATTGCTTGCATTGGTGCTTACCAGGGATCCCAGATACTTGGAATGAACTT 1439
Query 1425 TTCATTGCCCAGATTTGAAGTATTCAACATCATAACACACACA 1467
|||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1440 TTCATTGCTCAGATTTGAAGTATTCAACATCATCACACACACA 1482
Score = 56.5 bits (30), Expect = 7e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 1468 TGTTGATTCTTTGTTATAGAAAGGTTTTGTTTTT 1501
|||||||||||||||||||||||||||| |||||
Sbjct 1506 TGTTGATTCTTTGTTATAGAAAGGTTTT-TTTTT 1538
> AT2G37720.1 | Symbols: TBL15 | TRICHOME BIREFRINGENCE-LIKE 15
| chr2:15818082-15821295 FORWARD LENGTH=1525
Length=1525
Score = 833 bits (451), Expect = 0.0
Identities = 656/752 (87%), Gaps = 26/752 (3%)
Strand=Plus/Plus
Query 383 TTGTAACTTTGCAAAGGGAAAATGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTT 442
||||||||| |||||||| |||||||||||||| |||| | |||||||||||||||||
Sbjct 426 TTGTAACTTGGCAAAGGGGGAATGGGTTGAAGACAAGAAGCGGCCATTGTATTCTGGTTT 485
Query 443 TGAATGTAAACAATGGTTATCAA-CA-ATGTGGTCATGTAGAATAATGGGCAGACCCGAT 500
||||||||||||||||||||||| || || | || || || ||||||||||||||||
Sbjct 486 TGAATGTAAACAATGGTTATCAAACATATTT--TCCTGCAGGGTAATGGGCAGACCCGAC 543
Query 501 TTCTCATTTGAGGGTTATCGGTGGCAGCCAGAAGGTTGCAACATGCCACAGTTTGACAGA 560
||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 544 TTCTCATTTGAGGGTTACCGGTGGCAGCCAGAAGGTTGCAACATACCAGAGTTTAACAGA 603
Query 561 TTCA-CTTTCTTGACAAGAATGCAGAACAAGACGATAGCATTTATAGGAGACTCACT-GG 618
||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 604 GTCAACTT-CTTGAGAAGAATGCAGAACAAGACTATAGCATTTATAGGAGACTC-CTTGG 661
Query 619 GACGGCAACAGTTTCAATCCCTGATGTGTATGGCCAGTGGTGGTGAAGATAGCCCAGAGG 678
|| || |||| ||||||||||||||||||||||||| ||| ||| |||| || || ||||
Sbjct 662 GAAGGGAACAATTTCAATCCCTGATGTGTATGGCCACTGGAGGTAAAGAGAGTCCGGAGG 721
Query 679 TTCAAAACGTGGGATGGGAGTACGGTCTGGTGAAAGCC-AAAGGAGCTC-TCCGTCCTGA 736
||||||||||||||| |||||| ||||| |||| | || |||||||||| || ||||||
Sbjct 722 TTCAAAACGTGGGATCGGAGTATGGTCTTGTGATA-CCTAAAGGAGCTCCTC-GTCCTGG 779
Query 737 TGGTTGGGCTTATCGGTTCCCAACCACAAACACAACGATCTTGTATTATTGGTCAGCTAG 796
||||||||||||| |||| || ||||||||||||||| | |||| |||||||||||||||
Sbjct 780 TGGTTGGGCTTATAGGTTTCCGACCACAAACACAACGGTTTTGTCTTATTGGTCAGCTAG 839
Query 797 TTTATCAGATTTGGTACCAATGAACAACACAGATCCACCT-AGTCTTACTGCAATGCATC 855
|||| ||||||||||||| |||||||| |||||||||||| | ||||| |||||||||||
Sbjct 840 TTTAACAGATTTGGTACCGATGAACAATACAGATCCACCTCA-TCTTATTGCAATGCATC 898
Query 856 TGGACCGTCCACCAGCATTCATGAGAAACTACCTTCACCGTTTCGATGTATTGGTTCTGA 915
| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 899 TTGACCGTCCACCAGCATTCATAAGAAACTACCTTCACCGTTTCCATGTATTGGTTCTAA 958
Query 916 ACACCGGTCACCATTGGAACAGAGGGAAGATCGAAGGAAACCATTGGGTGATGCATGTAA 975
|||||||||||||||||| ||||| ||||| ||| ||| |||||||||||||| ||||
Sbjct 959 ACACCGGTCACCATTGGAGCAGAGATAAGATAGAAAAAAATCATTGGGTGATGCACGTAA 1018
Query 976 ATGGAACACAG-GTCGAAGGCGAATATCTCAAAGATA--TCAGAAA-CGC-AAAGGATTT 1030
||||||||| | |||||||||| |||| |||| || | | |||| ||| ||| ||||
Sbjct 1019 ATGGAACAC-GTGTCGAAGGCGGATATTTCAA-GA-ACGTT-GAAAACGCTAAA--ATTT 1072
Query 1031 T-ACAATACACAGCGTTGTGAAGTGGCTCGATGCACAGCTTCCGTTGCATCCGCGGTTGA 1089
| |||||||||||| | ||||||||||| |||||||| ||||| |||||||| |||||||
Sbjct 1073 TTACAATACACAGCCTGGTGAAGTGGCTTGATGCACAACTTCCATTGCATCCACGGTTGA 1132
Query 1090 AAGCTTTCTTCAGGACAATTTCTCCGAGGCAT 1121
|||||||||| | ||| ||||| || ||||||
Sbjct 1133 AAGCTTTCTTTACGACGATTTCCCCTAGGCAT 1164
> AT3G10282.1 | Symbols: | unknown pseudogene | chr3:3181970-3183328
FORWARD LENGTH=638
Length=638
Score = 289 bits (156), Expect = 7e-77
Identities = 293/352 (83%), Gaps = 37/352 (11%)
Strand=Plus/Plus
Query 232 GTCACATACTCAGAGGGAGTGTATCACTTGCCTTGATTATCCTCATTCTTTTGGTGATTA 291
|||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 GTCATATATTCAGAGGGAGTGTATCACTTGCCTTGATTATCATCATTCTTTTGGTGATTT 298
Query 292 TACTCCTGATTTCCGAGGAAAACCCGCTTCGTGCTTCTCTCTTTGAAGTAAAACGTCAGT 351
|||||||| |||| ||||||||| |||||| || |||||| ||||| ||| |||||||||
Sbjct 299 TACTCCTGGTTTCTGAGGAAAACTCGCTTCATGATTCTCTTTTTGATGTATAACGTCAGT 358
Query 352 Tttcatcttcttct--tcttcatcttct-tc-A--G-TTT-----GTAACTTTGCAAAGG 399
||||||||||||| | || || | || || | | ||| |||||| ||||||||
Sbjct 359 TTTCATCTTCTTCAGGTATTTATATGCTCTCCACAGCTTTTATTTGTAACTCTGCAAAGG 418
Query 400 GAAAATGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTTTGAATGTAAACAATGGT 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAAAATGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTTTGAATGTAAACAATGGT 478
Query 460 TATCAACAATGTGGTCATGTAGAATAATGGGCAGACCCGATTTCTCATTTGAGGGTTATC 519
||| | | ||||| |||| |||||||||||||||||||||||| |
Sbjct 479 CATC-----T-TC--CATGTGGAAT---GGGCAGACCCGATTTCTCATTTGA---T---- 520
Query 520 GGTGGCAGCCAGAAGGTTGCAACATGCCACAGTTTGACAGATTCACTTTCTT 571
| | | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 521 G----C--C-AGAAGGTTGCAACATGCCACAGTTTGACAGATTCAGTTTCTT 565
> AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein,
blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420
68 kDa protein {Cicer arietinum}
| chr2:19200860-19203138 FORWARD LENGTH=2279
Length=2279
Score = 233 bits (126), Expect = 3e-60
Identities = 156/170 (92%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 198 GTTGATGTT-ATCTCTAAGATGTTTGGTGG-AAAAAGTCACATACTCAGAGGGAGTGTAT 255
||||||||| |||||||| |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 583 GTTGATGTTAATCTCTAACATGTCTGGTGGAAAAAAATCACATACTCAGAGGGAGTGTAT 642
Query 256 CACTTGCCTTGATTATCCTCATTCTTTTGGTGA-TTATACTCCTGATTTCCGAGGAAAAC 314
||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||||
Sbjct 643 CACTTGCCTTGATTATCCTCATTCTTTTGGTGACTT-TACTCCTGGTTTCTGAGGAAAAC 701
Query 315 CCGCTTCGTGCTTCTCTCTTTGAAGTAAAACGTCAGTTttcatcttcttc 364
||||||| || |||||| ||||| ||| ||||||||||||||||||||||
Sbjct 702 CCGCTTCATGATTCTCTTTTTGATGTATAACGTCAGTTTTCATCTTCTTC 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5