BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496600
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64050.1 | Symbols: ATERS, OVA3, ERS | glutamate tRNA synthe... 3206 0.0
> AT5G64050.1 | Symbols: ATERS, OVA3, ERS | glutamate tRNA synthetase
| chr5:25629855-25633209 REVERSE LENGTH=2164
Length=2164
Score = 3206 bits (1736), Expect = 0.0
Identities = 1937/2029 (95%), Gaps = 34/2029 (2%)
Strand=Plus/Plus
Query 1 AGTTATGAGGCTTTAATCGAATTTATTGCTTTTGCTTTGCTTTGCGACTTTCTTCTTTCC 60
||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||
Sbjct 2 AGTTATGAGGCTTTAATCGAA--T-TTG---TTGCTTTGCTTTGCGACTTTCATCTTTCC 55
Query 61 GGA-TAATCAAATCCTTTTATCCTCTGAAAAATCTCAACTTTCGAAGAAAAAACGCAAAA 119
|| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 56 -GATTAATCAAATCCTTTTATCCTCTGAAAAATCTCAACTTTCGAAG--AAAACG-AAAA 111
Query 120 TGGCGAGCCTTGTCTACGGGACGCCGTGGCTTAGGATTAGGTCTTTACCGGAGCTTGCTC 179
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 112 TGGCGAGCCTTGTCTACGGGACGCCGTGGCTTAGGGTTAGATCTTTACCGGAGCTTGCTC 171
Query 180 CAGCTTTTCTCAGACGTCGTCAATCTTCTTTATTTTATTGTTCTCGGCGAAGCTTCGCGG 239
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 172 CAGCTTTTCTCAGACGGCGTCAATCTTCTTTATTTTACTGTTCTCGGCGAAGCTTCGCGG 231
Query 240 TGGTTGCGTGTTCTTCACCAGTTAGTACTGGTGGGTCTGTTAGAGTTCGTTTCGCGCCTT 299
||||||||||||| | ||||| | | |||||||||||| |||||||||||||||||||
Sbjct 232 TGGTTGCGTGTTCCACTCCAGTCAACAATGGTGGGTCTGTCAGAGTTCGTTTCGCGCCTT 291
Query 300 CTCCCACTGGTAATCTCCATGTAGGTGGAGCAAGGACTGCTCTTTTCAACTACTTGTTCG 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CTCCTACTGGTAATCTCCATGTAGGTGGAGCAAGGACTGCTCTTTTCAACTACTTGTTCG 351
Query 360 CGAGGTCTAAAGGAGGGAAATTTGTGCTGAGAATTGAAGATACGGATTTGGAGAGATCAA 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 352 CGAGGTCTAAAGGAGGGAAATTTGTGCTGAGAATTGAAGATACAGATTTGGAGAGATCAA 411
Query 420 CACGTGAATCTGAAGCAGCTGTTCTTCAGGATCTCTCATGGCTGGGTCTTGATTGGGATG 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 412 CACGTGAATCTGAAGCAGCTGTTCTTCAGGATCTCTCATGGCTTGGTCTTGATTGGGATG 471
Query 480 AAGGTCCTGGGGTTAGTGGAGACTTTGGTCCTTATCGACAATCCGAAAGAAATGCTTTGT 539
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 472 AAGGTCCTGGGGTTAGTGGAGACTTTGGTCCTTATCGGCAATCTGAAAGAAATGCTTTGT 531
Query 540 ACAAACAATATGCAGAGAAGCTTTTAGAGTCAGGTCATGTCTATCGATGCTTTTGCTCCA 599
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 532 ATAAACAATATGCAGAGAAGCTTTTAGAGTCAGGTCATGTCTATCGATGCTTTTGCTCAA 591
Query 600 GTGAGGAACTTGTAAAGATGAAGGAGATTGCAAAGTTGAAACAGTTGCCTCCAGTATATA 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 592 GTGAGGAACTTGTAAAGATGAAGGAGAATGCAAAGTTGAAACAGTTGCCTCCAGTATATA 651
Query 660 CCGGGAAATGGGCAACAGCTTCTGATTCTGAAATAGAGCAAGAGTTAGAAAAGGGAACAC 719
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 652 CCGGGAAATGGGCAACAGCTTCTGATGCTGAAATAGAGCAAGAGTTAGAAAAGGGAACAC 711
Query 720 CTTTTACTTACCGGTTTCGTGTGCCAAAGGAAGGCTCTTTGAAAATTAATGACCTGATTC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CTTTTACTTACCGGTTTCGTGTGCCAAAGGAAGGCTCTTTGAAAATTAATGACCTGATTC 771
Query 780 GTGGCGAGGTATGTTGGAACTTGGATACTCTTGGAGATTTTGTGGTAATGAGGAGTAATG 839
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 772 GTGGCGAGGTCTGTTGGAACTTGGATACTCTTGGGGATTTTGTGGTAATGAGAAGTAATG 831
Query 840 GCCAACCTGTTTACAACTTTTGTGTTACGGTAGATGATGCTACCATGGCTATATCACATG 899
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GCCAACCCGTTTACAACTTTTGTGTTACGGTAGATGATGCTACCATGGCTATATCACATG 891
Query 900 TTATAAGGGCTGAAGAACACTTACCTAATACTTTGAGGCAGGCTCTAATTTACAAGGCTC 959
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 892 TTATAAGGGCTGAAGAACACTTGCCTAATACTTTGAGGCAGGCTCTAATTTACAAGGCTC 951
Query 960 TGGAGTTCCCGATGCCTCAGTTTGCACATGTTTCTTTAATTCTAGCTCCGGATAGAAGTA 1019
| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 952 TTAAGTTCCCGATGCCTCAATTTGCACATGTTTCTTTAATTTTAGCTCCGGATAGAAGTA 1011
Query 1020 AACTGTCAAAGCGACATGGGGCAACTTCTGTAGGCCAGTACAGAGAGATGGGATATCTAC 1079
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AATTATCAAAGCGACATGGGGCAACTTCTGTAGGCCAGTACAGAGAGATGGGATATCTAC 1071
Query 1080 CTCAGGGAATGGTTAACTATTTGGCACTCTTAGGTTGGGGAGATGGGACTGAAAATGAAT 1139
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1072 CTCAGGGAATGGTTAACTATTTGGCACTCTTAGGTTGGGGAGACGGGACTGAAAATGAAT 1131
Query 1140 TCTTCACACTCGAGGAACTTGTTGAAAAATTCTCGATCGAACGTGTCAACAAAAGTGGTG 1199
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1132 TCTTCACACTCGAGGATCTTGTTGAAAAATTCTCGATTGAACGTGTCAACAAAAGTGGCG 1191
Query 1200 CGATTTTTGATTCAACAAAGTTAAGATGGATGAATGGTCAACATCTGAGGGCACTTCCAA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CGATTTTTGATTCAACAAAGTTAAGATGGATGAATGGTCAACATCTGAGGGCACTTCCAA 1251
Query 1260 AGGAAAAACTAACAAAACTTGTTGGTGAGCGATGGAAGAGTGCCGGTATCTTAACAGAAT 1319
| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1252 ATGAGAAACTAACAAAACTTGTTGGTGAGCGATGGAAGAGCGCTGGTATCTTAACAGAAT 1311
Query 1320 CCGAGGGGAGTTTTGTAGATGAAGCAGTCGAGCTTCTCAAGGATGGGATTGAGTTGGTGA 1379
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1312 CCGAGGGGAGTTTTGTAAATGAAGCTGTCGAGCTTCTCAAGGATGGGATTGAGTTGGTGA 1371
Query 1380 CAGATTCAGACAAAGTACTTTTGAACTTGCTTTCATATCCTCTACACGCTACATTGGCTA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CAGATTCAGACAAAGTACTTTTGAACTTGCTTTCATATCCTCTACACGCTACATTGGCTA 1431
Query 1440 GCCCTGAAGCTAAGCCTGCCGTGGAAGACAAACTTCATGAAGTAGCAGCCAGCCTCATAG 1499
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GCCCTGAAGCTAAGCCTGCTGTGGAAGACAAACTTCATGAAGTAGCAGCCAGCCTCATAG 1491
Query 1500 CTGCTTATGACAGCGGTGAGATTCCAAGCGCTTTAGAAGAAGGACAAGGTGCTTGGCAGA 1559
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 CTGCTTATGACAGCGGAGAGATTCCAAGCGCTTTAGAAGAAGGACAAGGTGCTTGGCAGA 1551
Query 1560 AATGGGTGAAAGCCTTTGGCAAATCATTGAAACGCAAAGGTAAATCACTTTTCATGCCAC 1619
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1552 AATGGGTGAAAGCCTTTGGCAAATCCTTGAAACGCAAAGGTAAATCACTTTTCATGCCAC 1611
Query 1620 TACGAGTGTTGTTAACGGGAAAACTCCATGGTCCTGAGATGGGCACCAGTATTGTTCTGA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TACGAGTGTTGTTAACGGGAAAACTCCATGGTCCTGAGATGGGCACCAGTATTGTTCTGA 1671
Query 1680 TTCACAAAGCTGGAAGTCCCGGTATAGTGGTTCCTCAGGCTGGGTTTGTATCCATGGAGG 1739
|| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1672 TTTACAAAGCTGGAAGTCCTGGTATAGTGGTTCCTCAAGCTGGGTTTGTGTCCATGGAGG 1731
Query 1740 AACGGTTTAAAATTCTCAGGGAGATAGACTGGGAAGCTTTGAACAAAGATGAGAGTGTGC 1799
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 AACGGTTTAAGATTCTTAGGGAGATAGACTGGGAAGCTTTGAACAAAGATGAGAGTGTGC 1791
Query 1800 CTCTTGAATCTACAGCCACAGTATCAACCTGAGAGAACTCCCCTTTTCTATTTTT----- 1854
|||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 1792 CTCTTGAATCTACAGCCACAGTATCAACCTGAGAAAACTCCCCTTTTTTTTTTTTTTTTT 1851
Query 1855 ----C-TTCAGT-TTTCGGTTAGTTGGTGAGA-AA-GACAGCCCAGAGATTTTGATTCCT 1906
| |||| | ||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1852 TTTTCCTTCAATATTT-GGTTAGTTGGTGAGAGAAAGACAGCCCAGAGATTTTGATTCCT 1910
Query 1907 CGTGCATTTCTTGTTTCCCGAAACAAATGGCACAACGAAATTTGTAGATTATAATGTATC 1966
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1911 CGTGCATTTCTTGTTTCCCGAAACAAATGGCACAAAGAAATTTGTAGATTATAATGTATC 1970
Query 1967 AGCAAAG--------G-AACAAACCAGAGTGCTTGTAACATTATCAGGC 2006
||||||| | |||||||||||| |||||||||||||||||||
Sbjct 1971 AGCAAAGCAAACTTAGGAACAAACCAGAGAGCTTGTAACATTATCAGGC 2019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99397079100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5