BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496601
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64060.1 | Symbols: anac103, NAC103 | NAC domain containing ... 1788 0.0
> AT5G64060.1 | Symbols: anac103, NAC103 | NAC domain containing
protein 103 | chr5:25633536-25635781 REVERSE LENGTH=1658
Length=1658
Score = 1788 bits (968), Expect = 0.0
Identities = 1248/1372 (91%), Gaps = 63/1372 (5%)
Strand=Plus/Plus
Query 46 AAGTTACTTAGTGTAGTGAAAGTTTTCCCCTTCTCTTCCAATGGGGAAAACTAACTTGGC 105
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 266 AAGTTACTTAGTGTAGTGAAAGTTTTCCCCTTGTCTTCCAATGGGGAAAACTAACTTGGC 325
Query 106 ACCTGGATTTCGGTTTCATCCGACTGATGTTGAACTTGTGAGATACTACTTGAAGAGGAA 165
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 ACCTGGTTTTCGGTTTCATCCGACTGATGTTGAACTTGTGAGATACTACTTGAAGAGGAA 385
Query 166 AGTTATGGGGAAAAAGTTCCAAGTTGATGCCATTGCTGAGATCGACATTTACAAGTTCGA 225
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 386 AGTTATGGGAAAAAAGTTCCAAGTTGATGCCATTGCTGAGGTCGACATTTACAAGTTCGA 445
Query 226 ACCACCTGATTTACCCGAGAAATCATGTCTAGGGACTGGAGATCTCAAGTGGTACTTCTT 285
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 446 ACCTCCTGATTTACCCGACAAATCATGTCTAGGGACTGGAGATCTTAAGTGGTACTTCTT 505
Query 286 CTGTCCAAGAGAAAAGAAGTATCCCAAAGGCGGTAAGGCAAACCGCTCTACTGAATGTGG 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 CTGTCCAAGAGAAAAGAAGTATCCCAAAGGCGGTAAGGCAAACCGCTCTACTGAATGTGG 565
Query 346 TTACTGGAAGACCACAGGGAGAGACAGAGATGTTTCTTACAATGACGAAGTCACTGGGAA 405
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 566 TTACTGGAAGACCACAGGGAGAGACAGAGATGTTTCTTATAATGACGAAGTCACTGGGAA 625
Query 406 GATAAGAACTCTGATTTATCACTACGGGAAAATACCCCGCGGTGATCGGACTGATTGGGT 465
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 626 GATAAGAACTCTGATTTATCACTACGGGAAAATACCTCGCGGTGATCGGACTGATTGGGT 685
Query 466 CATACATGAATATAGACTTGAAGACAAAGTACTGGCCCAAAAGAATGTTCCTCAGGATAC 525
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 686 CATACATGAATATAGACTTGAAGACAAAGTACTGGCTCAAAAGAATGTTCCTCAGGATAC 745
Query 526 TTATGTGCTTTGCGTTCTCTTTAAGAAAAATGGACTTGGACCAAGACATGGATCTCAATA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TTATGTGCTTTGCGTTCTCTTTAAGAAAAATGGACTTGGACCAAGACATGGATCTCAATA 805
Query 586 TGGTGCTCCATTTAAAGAAGAGGATTGGAGTGATAAGGAAGAGGAATATACTCAGACTCA 645
||||||||||||||| |||||||||||||||||||||||||| | | ||| | ||||
Sbjct 806 TGGTGCTCCATTTAAGGAAGAGGATTGGAGTGATAAGGAAGAAG-A-ATA-T---ACTC- 858
Query 646 TATTGTAGCTGTTCCTTGTGCAGAAAACAACAATCCTGGTCCTAGCAAAGAAACCAGTCT 705
| | | | | ||||| || |||||||||| ||||||||||||||
Sbjct 859 -A--G-A-ATCAT-CTTGT--AG------------CTGGTCCTAGTAAAGAAACCAGTCT 898
Query 706 AGCTGCTACGGCCTCACAATCGCACGCTCCTAAGGATTGTTTGACAGGAGTGATCTCAGA 765
|||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 899 AGCTGCTAAGGCCTCACACTCGTACGCTCCTAAGGATGGTTTGACAGGAGTGATCTCAGA 958
Query 766 ATCTTGCGTCTCTGATGTACCGCCACTAACTGCCACAGTACTGCTTCCACCTCTAACAAG 825
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 959 ATCTTGCGTCTCTGATGTGCCGCCACTAACTGCCACAG---TGCTTCCACCTCTAACAAG 1015
Query 826 TGATGTTGTAGCTTACAATCCCATGTCTTCTTCAGCTCTTCCTGAGGTTCCTCAGGTATC 885
||||||| |||||||||||||| | ||||||||| |||||| |||||||||||| |||||
Sbjct 1016 TGATGTTATAGCTTACAATCCCTTTTCTTCTTCACCTCTTCTTGAGGTTCCTCAAGTATC 1075
Query 886 TCTCGATGATGGCGAGTTAAATTCGTTGCTCGATCTCTTTTCTGTTGACAATGACGACTG 945
|||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1076 TCTCGATGGTGGCGAGTTAAATTCGATGCTTGATCTCTTTTCTGTTGACAATGACGACTG 1135
Query 946 TTTACTTTTCGACGATTTCGACTACCAAAATGAGGTAAGACATGAGCCTGATGTTTTTGT 1005
||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 1136 TTTACTTTTCGACGATTTCGACTACCATAATGAGGTAAGACAT---CCTGATGGTTTTGT 1192
Query 1006 AAACGAGGAAGCTCCAGTTTTCTTAGGAGATGGCAATTTCAGTGGAATGTTTGACCTGAG 1065
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AAACAAGGAAGCTCCGGTGTTCTTAGGAGATGGCAATTTCAGTGGAATGTTTGACCTGAG 1252
Query 1066 CAACGAC-ATGGTCGTAGAGCTACAGGATCTGATCCAGCCAGCCACAcctcctcctcctc 1124
||| ||| | | |||||||||||||||||||||| ||| || |||| |||| |||||||
Sbjct 1253 CAATGACCAAG-TCGTAGAGCTACAGGATCTGATACAGTCACCCACTCCTCATCCTCCTT 1311
Query 1125 ctcct---GCTCAAGCCAGTAATCCTGATGACTCAAGAAGCAACGGTCAGACTTAGGACC 1181
||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1312 CTCCTCCAGCTCAAGCTAGTATTCCTGATGACTCAAGAAGCAACGGTCAGACTAAGGACG 1371
Query 1182 ATCAAAAAATATTATGTGCTGATTTATGATCTTTCTTGCATTG-----ATGCTTCATGGA 1236
|| || | | || |||||||| ||||| |||||||||| ||| ||||| ||||||
Sbjct 1372 ATTAAGTA-T-TT-TGTGCTGACTTATGCTCTTTCTTGCTTTGGTCTGATGCTCCATGGA 1428
Query 1237 AACAGAGACCAAACATGTGAAGCTTCAGCTAGAATGTTTTTCTTCTGGCGCCATCTCTGT 1296
||||||||||||||||||||||||| ||| |||| |||| | || | || | ||||||||
Sbjct 1429 AACAGAGACCAAACATGTGAAGCTTTAGCCAGAACGTTTCTATTGTTGC-C-ATCTCTGT 1486
Query 1297 CTGCACGAAAGA-GA--CAAAACCATGAATCAGTAA----A--C-GTCCAGCT-GTGGAG 1345
|||||||||||| || ||||||||||||||||||| | | |||||| | ||||||
Sbjct 1487 CTGCACGAAAGAAGAGACAAAACCATGAATCAGTAACTTGAAACCGTCCAG-TAGTGGAG 1545
Query 1346 CCAGCTTTCTATGTTATGTTTCTGCAACT---TTGTCTGTAGTCTTAGATTT 1394
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1546 CCAGCTTTCTATGTTATGTTTCTGCAACTGCGTTGTCTGTAGTCTTAGATTT 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5