BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496603
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64080.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 1125 0.0
> AT5G64080.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:25645263-25646735
REVERSE LENGTH=858
Length=858
Score = 1125 bits (609), Expect = 0.0
Identities = 762/834 (91%), Gaps = 17/834 (2%)
Strand=Plus/Plus
Query 1 CTCTCTACTCTCTCCTCAGAAACCTCAAAA-A-CTCAAAAGAGAGAAGAAGAATCAAAAT 58
|||||||||||||||||| ||| ||||||| | | |||| |||||||||||||||||||
Sbjct 31 CTCTCTACTCTCTCCTCA-AAAACTCAAAAGAGCAAAAAAAAGAGAAGAAGAATCAAAAT 89
Query 59 CCCACACAATGGCAACACTCTCTTCTTTCACCGCAACAACACctctccttctcatcgttc 118
|||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 90 CCCACACAATGGCAACACACTCTTCCTTCACCGCAACAACACCTCTCTTTCTCATCGTTC 149
Query 119 ttctatctctctcctccgtctcagttctcggcgcatctcACCGCCACGCGGCGGCGCCGG 178
||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 150 TTCTATCCCTATCCTCCGTCTCAGTTCTCGGCGCATCTCACCACCACGCAACGGCGCCGG 209
Query 179 CTCCGTCTGTAGACTGTTCGACTCTCATTCTCAACATGGCTGACTGTTTGTCCTTTGTTT 238
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 210 CTCCGTCTGTAGACTGTTCGACTCTCATACTCAACATGGCTGACTGTTTATCCTTCGTTT 269
Query 239 CTAGCGGAGGCACGGTGGCGAAACCGGAAGGTACTTGTTGTTCTGGTCTTAAGACGGTGC 298
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 270 CGAGCGGAGGCACGGTGGCGAAACCGGAAGGTACATGTTGCTCTGGTCTTAAGACGGTGC 329
Query 299 TTAAAACTGACGCTGAGTGTCTCTGTGAAGCGTTTAAGAGCAGTGCTTCTCTTGGAGTTA 358
||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 330 TTAAAGCTGACTCTCAGTGTCTATGTGAAGCGTTTAAGAGCAGTGCTTCTCTTGGAGTTA 389
Query 359 CTTTGAATATCACCAAGGCTTCTACTCTTCCCGCCGCATGCAAGCTTCACGCTCCTTCTA 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CTTTGAATATCACTAAGGCTTCTACTCTTCCCGCCGCATGCAAGCTTCACGCTCCTTCTA 449
Query 419 TCGCTAACT-GTGGATTGTCTGTTGCTCCAAGTACTGCACCAGATATTTCTCCAGGAGGA 477
|||||| || |||||||||||||||||||||||||||| |||| | || ||||||||| |
Sbjct 450 TCGCTA-CTTGTGGATTGTCTGTTGCTCCAAGTACTGCTCCAGGTCTTGCTCCAGGAGTA 508
Query 478 GCTGCTGCTGGACCTGAAACAGCCGGAGTTCTAGCTCCTAACCCATCTCCAGGGAACGAT 537
||||||||||||||||| ||||||||| |||||||||| || || ||| |||||||||||
Sbjct 509 GCTGCTGCTGGACCTGAGACAGCCGGATTTCTAGCTCCAAATCCTTCTTCAGGGAACGAT 568
Query 538 GGATCTTCTTTGATTCCGATCTCGATCACAACCT-TATTCAGCGCCGTATTGTTCGTTTT 596
||||||||||||||||||| |||| ||||||| | || |||| |||||| ||||||||||
Sbjct 569 GGATCTTCTTTGATTCCGACCTCGTTCACAAC-TGTACTCAGTGCCGTACTGTTCGTTTT 627
Query 597 GTTCTCCTCTAGAGTGTAATAAAAA-CCTGAACCTTTTTTCACCAGCTAGATTTGGCTTT 655
||||| |||||| | |||| ||||| |||||| ||||||||||||||||||||||||| |
Sbjct 628 GTTCTTCTCTAGTGCGTAAAAAAAAACCTGAATCTTTTTTCACCAGCTAGATTTGGCTGT 687
Query 656 ATGAAATTGGTTTA-GGTTTTTATTAGAGTTAAATCTGTGT--GTTTTGGAGTGTTCTGT 712
||||||||| || | |||||||||||| ||||| ||| ||| |||||||||||||||||
Sbjct 688 ATGAAATTGATTAATGGTTTTTATTAGGGTTAA-TCTATGTATGTTTTGGAGTGTTCTGT 746
Query 713 TTTGAGACCATATCGGTTTCTCTATTACAGTAGCTTTTACTCTTTTAGTTTATGTTATTA 772
||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 747 TTTTAGACCATATCGGTTTCTCTATTAC--TAGCGTTTACTCTTTTAGTTTATGTTATTA 804
Query 773 CTTTGTGTCGCA-CATTGGTCCTTTTGTTCGAT--ATCGCTTATTCCTTCCTCT 823
|||||| || || ||||||||||||| |||||| ||||||||||||||| |||
Sbjct 805 CTTTGTCTCACAACATTGGTCCTTTTATTCGATCTATCGCTTATTCCTTCATCT 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5