BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496605
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64090.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2043 0.0
> AT5G64090.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin
(InterPro:IPR018619); BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria -
0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:25648013-25649620
FORWARD LENGTH=1608
Length=1608
Score = 2043 bits (1106), Expect = 0.0
Identities = 1306/1399 (93%), Gaps = 27/1399 (2%)
Strand=Plus/Plus
Query 1 AATCCAGCGAAAACTTC-CCTTTGTCTCAACTCAAGTCAGACTCAATTACCATGGACTTC 59
|||| |||||||||||| | ||||||| |||||||||||||||||| |||||||||||
Sbjct 9 AATCTAGCGAAAACTTCTCTTTTGTCT---CTCAAGTCAGACTCAATTCCCATGGACTTC 65
Query 60 TCCGTCAAACCTCCCGCCGGCTCGCCTTCTCCATCGTCTTCCACCTCTTCCTCTACTCCT 119
|||||||||||| ||| |||||| |||||||| || |||||||||||||| ||||| |||
Sbjct 66 TCCGTCAAACCTTCCGGCGGCTCACCTTCTCCGTCATCTTCCACCTCTTCTTCTACGCCT 125
Query 120 CACCGTTTCAAATCCGCCACCACACCAACCGCTACTG-C-C-GCCG---CAGGAATCT-- 171
|| ||||||||||||| ||||||||||||||||||| | | |||| ||||| |||
Sbjct 126 CATCGTTTCAAATCCGTTACCACACCAACCGCTACTGCCGCTGCCGTCTCAGGATTCTCC 185
Query 172 -CATCCACCG-C-C-GATCGAGATCCGATGCATTCCTGGTGGGAATCAGTCTCAAAGCAA 227
| ||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CCCTCCGCCGCCGCTGATCGAGATCCGATGCATTCCTGGTGGGAATCAGTCTCAAAGCAA 245
Query 228 CGCTCTCGCATActctctctctcatctctcctctcCGGCGATTCTCACTTTGAAGACGGC 287
|| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 246 CGTTCTCGCATCCTCTCTCTTTCATCTCTTCTCTCCGGCGATTCTCACTTTGAAGACGGT 305
Query 288 GACGTAACTCCGATCTCCTCTCTTGCAGATTCCGATCGGCCGGCGTTATCGTTACTTTCT 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 306 GACGTAACTCCGATCTCCTCTCTTGCAGATTCCGATCGGCCGGCGTTATCGTTACTCTCT 365
Query 348 TCTCGCGCTGCTTACTCTTTGATCTCGAATTCTCTTTGCAATCCAGCTTCTGGTTCTGGA 407
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 366 TCTCGTGCTGCTTACTCTTTGATATCGAATTCTCTTTGCAATCCAGCTTCTGGTTCTGGA 425
Query 408 TCTGATCCGCTTTGTCAATGGCTATACGAAACCTACCTCTCCTCTGATCCACCGCTTCGT 467
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 426 TCTGATCCGCTTTGTCAATGGCTATACGAAACTTATCTCTCCTCTGATCCACCACTTCGT 485
Query 468 CTCGTCGTCCTCTCGTTCCTTCCGTTACTCGTCGGAATGTACCTTG-CTCGAATTCATTC 526
||||| |||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 486 CTCGTTGTCCTCTCGTTCTTTCCGTTACTCGTCGGAATGTA-CTTGTCTCGAATTCATTC 544
Query 527 CTCAGATTCTTCGTCTCTTCCTTCTCTATCCGGATTCGAAGCTGTGCTTCTCGCAATCTA 586
||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CTCGGATTCGACATCTCTTCCTTCTCTATCCGGATTCGAAGCTGTGCTTCTCGCAATCTA 604
Query 587 CGCCGCTGAGGTTAAAGCTCGCGCAGGTAAACCGATACTCGTACACATTCCAGATCTCTC 646
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 605 CGCCGCTGAGGTTAAAGCTCGCGCAGGTAAACCTATACTCGTACACATTCCAGATCTCTC 664
Query 647 TCAGCCATCTCTCTACCACACACCGAGAAACGGCGTTGACAAATCGCGTGATTCCAATCC 706
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TCAGCCATCTCTTTACCACACACCGAGAAACGGCGTTGACAAATCGCGTGATTCCAATCC 724
Query 707 CACCGCCTCCGTTGGAGTCTTGTCTCCGCAGCTTGAGCCTCAGATCGCGGTTAAGTCAAC 766
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CACCGCCTCCGTCGGAGTCTTGTCTCCGCAGCTTGAGCCTCAGATCGCGGTTAAGTCAAC 784
Query 767 TAAGCGAGCCAGCATCGTTGGCGTGGGACTACAATGCTATTTCAAGGAGATCTCACAGAT 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 785 TAAGCGAGCCAGCATCGTTGGCGTGGGACTACAATGCTATTTCAAGGAGATCTCACAAAT 844
Query 827 GCCGGCTTGGTCTAAGCTTGAATTCTGTAAATTCGCTGCTAATTGGGCTGGTCAAGACTG 886
|||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 845 GCCGGCTTGGTCTAAGCTTGAATTCTGTAAGTTCTCTGCTAGTTGGGCTGGTCAAGACTG 904
Query 887 CGATTGCAAGGAAAAGATCGATGGAGACGAAGACAAAGTCTTAGCACTAACTAATGGTTT 946
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 905 CGATTGCAAGGAAAAGATCGATGAAGACGAAGACAAAGTCTTAGCACTAACTAATGGTTT 964
Query 947 TGGAGATTCCTCCTCTTTCAATGGCAGTAGTGGACGTAGTCTTGAGATCGAAGAGGATTT 1006
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 965 TGGAGATTCATCCTCTTTCAATGGAAGCAGTGGACGTAGTCTTGAGATCGAAGAGGATTT 1024
Query 1007 TGATAGATTAGCAATCAGAGAGAACGGAGAACAACTTAGCTCCAATGGCGGCCTCG---- 1062
|||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 1025 TGATAGATTAGCAATCAGAGAGAACGAAGAACAACTTAGCTCTAATGGCGGAGGAGGGGG 1084
Query 1063 --TAGGA-G-G-CGTGAGGATTCCACTTCCATGGGAACTGTTTCAACCTACACTACGGAT 1117
||||| | | |||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1085 AGTAGGAAGAGGCGTGAGGATTCCACTTCCATGGGAGCTGTTTCAACCTACGTTAAGGAT 1144
Query 1118 TCTAGGTCATTGCTTGCTTAGTCCATTGAACACTGGAGATGTTAAAGATGCAGCTTCCAA 1177
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1145 TCTAGGTCATTGCTTGCTTAGTCCATTGAATACTGAAGATGTTAAAGATGCAGCTTCCAA 1204
Query 1178 TGCAGTAAGATCATTGTACGCAAGAGCCTCTCATGATCTGAATCCACAGGCGATTTTAGC 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 TGCAGTAAGATCATTGTACGCAAGAGCCTCTCATGATCTGAATCCACAGGCGATTTTAGC 1264
Query 1238 TACACGGAGTTTGGTTAACCTCGATACAAGCTCACGAACCGCGGCAAAGACCGTAGCTGC 1297
|||| ||||||| |||||||| ||||||||| |||||||| ||| |||||||||||||||
Sbjct 1265 TACAAGGAGTTTAGTTAACCTTGATACAAGCGCACGAACCTCGGGAAAGACCGTAGCTGC 1324
Query 1298 AGAGACTGTTAATGGCTCGTCGAATGTTAACACTCCAAGCAAGGCGAAAAAACCAGAGAT 1357
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1325 AGAGACTGTTAATGGCTCATCGAATGTGAACACTCCAAGCAAGGCGAAAAAACCTGAGAT 1384
Query 1358 TCTTCTGGCGTCAAAGTGA 1376
||||||||| |||||||||
Sbjct 1385 TCTTCTGGCATCAAAGTGA 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5