BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496610

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64130.3 | Symbols:  | cAMP-regulated phosphoprotein 19-rela...   582    1e-165


> AT5G64130.3 | Symbols:  | cAMP-regulated phosphoprotein 19-related 
protein | chr5:25664350-25666244 REVERSE LENGTH=785
Length=785

 Score =  582 bits (315),  Expect = 1e-165
 Identities = 336/346 (97%), Gaps = 2/346 (1%)
 Strand=Plus/Plus

Query  309  AGGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGCAAGGTGTTG  368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  383  AGGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGCAAGGTGTTG  442

Query  369  CGAAGCCAAAGGGACCCCTTGAAGCTCTTCGTCCCAAGTTACAGCCAACGCAGCAGCAGA  428
            ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct  443  CGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGCCAACGCAGCAGCAGA  502

Query  429  CGCGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGATGGAGGAGCTGCTC  488
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  503  CACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGATGGAGGAGCTGCTC  562

Query  489  AGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGTGA-TGA-TGATGTATGAAAACTCT  546
            ||||||||||||||||||||||||||||||||||| ||  ||  ||||||||||||||||
Sbjct  563  AGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGAGACAGAGAGATGTATGAAAACTCT  622

Query  547  TGTGTAAGAAGTCTGTTATAATCGGATATTTTCTGTCCATTTGAAACATCAGATATGGCT  606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  623  TGTGTAAGAAGTCTGTTATAATCGGATATTTTCTGTCCATTTGAAACATCAGATATGGCT  682

Query  607  TTCATTAAAATCTTAACTTGATCGAGAAATGATAGTTTACCCCTTT  652
            |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  683  TTCATTAAAATCTTAACTTGATCGAGAAATTATAGTTTACCCTTTT  728


 Score =  394 bits (213),  Expect = 6e-109
 Identities = 282/312 (90%), Gaps = 18/312 (6%)
 Strand=Plus/Plus

Query  1    ATCAATTCACAAAGAAGATCTTCTTCTCCCATTTCGCCATTGACAACAACGAAGCTACGT  60
            |||||||||| ||||   ||||||||||||||||| |||||||| ||| |||||  ||||
Sbjct  16   ATCAATTCACCAAGATCTTCTTCTTCTCCCATTTCTCCATTGACGACAGCGAAGAAACGT  75

Query  61   CCCAACGAGCTCAGAGAGCCACACCAATCCtcttcttcttcttcttcttcttcttcttcC  120
            |||||||||||||||||||||||||||| | | ||  | | || ||||||||||||||||
Sbjct  76   CCCAACGAGCTCAGAGAGCCACACCAAT-C-C-TC--C-T-TT-TTCTTCTTCTTCTTCC  127

Query  121  TCCTGCATTTTTGG-TTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATGTGA  179
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  128  TCCTGCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATGTGA  187

Query  180  AAGAGCAATCAGTGCAAGGAAACCTCACCAACGAGGCAGAAAAGTCAATGCCATCATCAC  239
            ||||||||   | | ||  |  |||||||||||||||||| |||||||||||||||||||
Sbjct  188  AAGAGCAA---G-G-AA--A--CCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCAC  238

Query  240  AGCAGGAGGAGGCTGCTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCTCCTC  299
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  239  AGCAGGAGGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTC  298

Query  300  TCATTTCCAAGG  311
            ||||||||||||
Sbjct  299  TCATTTCCAAGG  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31496810169


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5