BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496612
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64150.1 | Symbols: | RNA methyltransferase family protein ... 1594 0.0
AT5G64160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 316 3e-85
> AT5G64150.1 | Symbols: | RNA methyltransferase family protein
| chr5:25668831-25671218 REVERSE LENGTH=1787
Length=1787
Score = 1594 bits (863), Expect = 0.0
Identities = 988/1049 (94%), Gaps = 6/1049 (1%)
Strand=Plus/Plus
Query 542 AAATCCTCTACGG-AGACTAATTCTCTCAGCATAACTCCCAAGACACCGCTATTCCTTAG 600
||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 602 AAATCCTCT-CGGCCGACTAAGTCTCTCAGCATAACTCCCAAGACACCGCTATACCTTAG 660
Query 601 AACGCCGTCGCACGCAACTTCTCTATCTGAGGTTTGGAAATGGCACGACTGGGCGAAAGA 660
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 GACGCCGTCGCACGCAACTTCTCTATCGGAGGTTTGGAAATGGCACGACTGGGCGAAAGA 720
Query 661 TCTGGCCTCCTCCGTAGAGGAATCTTCGACGAATTCTGAAGATGTTCTTGACTCTGTAAT 720
|||||| |||||||||||||||||||||| |||||| |||||| |||||||||||| ||
Sbjct 721 TCTGGCGTCCTCCGTAGAGGAATCTTCGAAGAATTCCGAAGATACTCTTGACTCTGTCAT 780
Query 721 TCTCCACCGTGAGCTAAAATGGCTGATCGAAGACTCAATCGTAGACGATCCTTTAGTGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCTCCACCGTGAGCTAAAATGGCTGATCGAAGACTCAATCGTAGACGATCCTTTAGTGAT 840
Query 781 TCTTCACAGAAGCGAAATCGCGGACAACGGCGAGAAGAATGTGAAATTGAGAGCGCCGTT 840
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 TCTTCATAGAAGCGAAATCGCGGACAACGGCGAGAAGAATGTGAAATTGAGAGCGTCGTT 900
Query 841 GGAGGAGCTTTATGATTTATGGAGGCAGAGGATCGAGAAGCGGCGGCCGTTTCAGTACGT 900
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 901 GGAGGAGCTTTACGATTTATGGAGGCAGAGGATCGAGAAGCGTCGGCCGTTTCAGTACGT 960
Query 901 GGTCGGATGCGAATACTGGAGAGATTTGGTGTTGTGCGTCGAGGAAGGGGTTCTAATTCC 960
||||||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 961 CGTCGGATGCGAGCATTGGAGAGATCTAGTGTTGTGCGTTGAGGAAGGGGTTCTAATTCC 1020
Query 961 GAGACCGGAGACGGAACTTATCGTCGATATGGTGGAGGAGCTTGTAGCGAGAGATGAATG 1020
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 GAGACCGGAGACGGAACTGATCGTCGATATGGTGGAGGAGCTTGTAACGAGAGATGAATG 1080
Query 1021 GTTTAAGAAAGGTTTTTGGGCTGATCTTGGGACAGGAAGTGGTGCAATTGCGATCGGCAT 1080
||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1081 GTTTAAGAAAGATATTTGGGCTGATCTTGGGACAGGAAGTGGTGCTATTGCGATCGGCAT 1140
Query 1081 TGCTAAAGTCTTGGGAAGCAGTGGGAGAGTTATAGCTACAGATCTCAGTCCGGTGGCAGT 1140
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 TGCTAAAGTCTTGGGAAGCCGTGGGAGAGTTATAGCTACAGATCTCAGTCCGGTGGC-GA 1199
Query 1141 T-GCCGTTGCCGGAAAAAATGTGCAGAGATACAGCCTTGAGGGGATGATTGAAGTGAGAG 1199
| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCGCCGTCGCCGGCCACAATGTGCAGAGATACAGCCTTGAGGGGATGATTGAAGTGAGAG 1259
Query 1200 AAGGATCATGGTTTGAGCCTTTGAAAGGTCTTGAAGGAAAACTTGTGGGGCTTGTAAGTA 1259
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1260 AAGGATCTTGGTTTGAGCCTTTGAAAGATCTTGAAGGAAAACTTGTGGGGCTTGTGAGTA 1319
Query 1260 ATCCACCATACATACCAAGTGATGACATACCAGACCTACAAGCTGAAGTTGGTAAACATG 1319
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |
Sbjct 1320 ATCCACCATACATACCAAGTGATGACATTCCAGGCCTACAAGCTGAAGTTGGTAGACACG 1379
Query 1320 AACCGAAACTTGCATTGGATGGTGGTATCGATGGAACTGATAGTCTTCTCCATCTCTGTC 1379
|||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 1380 AACCGAAACTTGCATTGGATGGTGGTATTGATGGAACTGATAGTCTTTTTCATCTCTGTC 1439
Query 1380 ATGGGGCTTCTCGGATGCTTCAACGC-GGTGGTTTTTTCGTTTTCGAGACCAATGGAGAG 1438
|||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||
Sbjct 1440 ATGGGGCTTCTCGGATGCTTCAAC-CTGGTGGCTTTTTCGTTTTCGAGACTAATGGAGAG 1498
Query 1439 AAACAAAGCAAGATGATCGTTGATTACATGATGAGCAATGATCTAAAAGACTGTTTCTCA 1498
|| ||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||
Sbjct 1499 AAGCAAAGCAAGATGATCGTAGATTACATGATGACCAGTGATCTCAAAGACTGTTTCTCT 1558
Query 1499 GATTTGAAGATAGTTTCTGATTTTGCTGGAATCAATCGGTTCGTGACTGGCTTTCGTCTC 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GATTTGAAGATAGTTTCTGATTTTGCTGGAATCAATCGGTTCGTGACTGGCTTTCGTCTC 1618
Query 1559 TGAGATTTTTTACACAGCTTGCTGTGGTG 1587
|||| ||||||||||| || ||||| |||
Sbjct 1619 TGAGCTTTTTTACACAACTCGCTGTAGTG 1647
Score = 715 bits (387), Expect = 0.0
Identities = 502/554 (91%), Gaps = 21/554 (4%)
Strand=Plus/Plus
Query 1 AATTCGATGAATTGAGGT-T-T---A-GAAGATCAAAGAGAAAGATGACCTGAGAGAAAA 54
|||||||||||||||||| | | | || ||||||||||| || ||||||||||||||
Sbjct 26 AATTCGATGAATTGAGGTGTATAAAATCAAAATCAAAGAGAAGGAAGACCTGAGAGAAAA 85
Query 55 CGTCGTCAGCTGAAGGAAGGCCGGAGTGTTTAGCGGAGGAGGCAGATGCAGAGAAATCAA 114
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 86 CGTCGTCAGCTGAAGGAAGGCCGGCGTTTTTAGCGGAGGAGGCAGATGCAGAGAAATCAA 145
Query 115 ACACAGACGACGATTCATATCTCCGAACACCATTATCGTCATC-T--TCAGAGTTCTCGT 171
||||||| ||||||||||||||||||||| ||||||| |||| | || ||||| ||||
Sbjct 146 ACACAGAAGACGATTCATATCTCCGAACATCATTATCCCCATCTTCGTCGGAGTTGTCGT 205
Query 172 AATCTCCAAAAGTTCTCTCCTCTGCTTCTTCTTCTTCTGCAGAAGAATAGCCTTGAAGCA 231
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 206 AATCCCCAAAAGCTCTCTCCTCTGCTTCTTCTTCTTCAGCAGAAGAATAGCCTTGAAGCA 265
Query 232 GCGTCAAGCTCATGTTTGTTCGTTGCTCCAAAGATCTATCGGAGCCGCAAACGAAAATAA 291
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 266 GCGTCAAGCTCATGTTTGTTCGTTGCTCCAAAGATCTATCGGAGCCGCAAACAAAAATAA 325
Query 292 GTAGAACTTTTCTTAATTTATGCTTTAGCCCTTTAGATTCCTTGTAAATCTAATTTCAAT 351
| |||||||||||| |||||||||||||||| ||| ||||||||| ||||| ||||||||
Sbjct 326 GAAGAACTTTTCTTTATTTATGCTTTAGCCCCTTATATTCCTTGTTAATCTTATTTCAAT 385
Query 352 CCTCGGTTCAAAACCCGGCGAAAACGAAACCGGAACCGGATTATCCGGTTTACGGTTTAG 411
||||||||||||||||||| |||| | | | ||||||||||||||||||| | || |
Sbjct 386 CCTCGGTTCAAAACCCGGCTAAAA--ACA--G-AACCGGATTATCCGGTTTA-G-TTG-G 437
Query 412 TTGGAA-AGATTTATAAACCGATTTGGTCTGTTTGTGCGGCAAAAACCTTGAAATGATAA 470
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 T---AATATATTTATAAACCGATTTGGTCTGTTTGTGCGGCAAAAACCTTGAAATGATAA 494
Query 471 GAATCTTTCCAAGTTTACGGTTTACCTCTCTGCTCTCTGCCGCTAAACCTCTTTGCTCAT 530
||||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 495 GAATCTTCCCAAGTCTACGGTTAACCTCTTTGCTCTCTGCCGCTAAACCTCTTTGCTCAT 554
Query 531 ATTCTCCGGCGAAA 544
|||||||||||||
Sbjct 555 CTTCTCCGGCGAAA 568
> AT5G64160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr5:25670930-25672463 FORWARD LENGTH=840
Length=840
Score = 316 bits (171), Expect = 3e-85
Identities = 201/215 (93%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 44 CTGAGAGAAAACGTCGTCAGCTGAAGGAAGGCCGGAGTGTTTAGCGGAGGAGGCAGATGC 103
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 215 CTGAGAGAAAACGTCGTCAGCTGAAGGAAGGCCGGCGTTTTTAGCGGAGGAGGCAGATGC 156
Query 104 AGAGAAATCAAACACAGACGACGATTCATATCTCCGAACACCATTATCGTCATC-T--TC 160
|||||||||||||||||| ||||||||||||||||||||| ||||||| |||| | ||
Sbjct 155 AGAGAAATCAAACACAGAAGACGATTCATATCTCCGAACATCATTATCCCCATCTTCGTC 96
Query 161 AGAGTTCTCGTAATCTCCAAAAGTTCTCTCCTCTGCTTCTTCTTCTTCTGCAGAAGAATA 220
||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 95 GGAGTTGTCGTAATCCCCAAAAGCTCTCTCCTCTGCTTCTTCTTCTTCAGCAGAAGAATA 36
Query 221 GCCTTGAAGCAGCGTCAAGCTCATGTTTGTTCGTT 255
|||||||||||||||||||||||||||||||||||
Sbjct 35 GCCTTGAAGCAGCGTCAAGCTCATGTTTGTTCGTT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5