BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496615
Length=2459
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64170.2 | Symbols: | dentin sialophosphoprotein-related | ... 3369 0.0
> AT5G64170.2 | Symbols: | dentin sialophosphoprotein-related
| chr5:25672466-25676746 REVERSE LENGTH=2590
Length=2590
Score = 3369 bits (1824), Expect = 0.0
Identities = 2053/2163 (95%), Gaps = 17/2163 (1%)
Strand=Plus/Plus
Query 192 GTTTTGCAATAGAGATGACATGTCGGGGTAATGTGCATGATTTTAGTGGTGATTAAAGAG 251
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 226 GTTTTGCAATAGAGATGACATATCGGGGTAATGTGCATGATTTTAGTGGTGATTAAAGAG 285
Query 252 TCTTGAAGTTGGGAGGAAATGTCGGACTTTTACATTGATGAGCTAGGCGATTATATTTCA 311
|| ||||||||||||| |||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 286 TC-TGAAGTTGGGAGG-AATGTCGGACTTGTACATTCATGAGCTAGGCGATTATCTTTCG 343
Query 312 GATGAATTTCATGGGAACGATGATGGTATAGTGCCAGACTCAGCGTATGAGAATGGAGGA 371
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 344 GATGAATTTCATGGGAACGATGATGGTATAGTGCCAGACTCAGCGTATGAGGATGGAGGT 403
Query 372 CAGTTTCCAATTCTAGTTAGTAGCAGGAAGAAACGAAGAAATGAAGATATGGGTAGTGGA 431
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 404 CAGTTTCCAATTCTAGTTAGTAACAGGAAGAAACGAAGAAATGATGATATGGGTAGTGGA 463
Query 432 ACAAACAATCTAAAGAGTAATACTTTTATCAAGACG-GAGGCAAACATGTTAGGAAAAAA 490
|||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 464 ACAAACCATCTAAAGAGTAATACTTTTATCAAGA-GAGAGGCAAACATGTTAGGAAAAAA 522
Query 491 TCCATGGCCGGAGGAAA-ATAGTGGTGGCTCTTCGGTTTCTCGTGATACGGGATCAGGCA 549
||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 523 TCCATGGCCTGA-GAAAGATAGTGGTGGCTCTTCGGTTTCTCGTGATACGGGAACAGGAA 581
Query 550 AAGATGTTCAGGATATGACATTGGAGGATACAAATATTTCAGATCATGGTTTCAATGGTG 609
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 582 AAGATGTTCAGGATATGACATTGGAGGATACAAATACTTCAGATCATGGTTTCAATGGTG 641
Query 610 GCCACGTTGATGTGGTTGAAAATTTATCCACCGTGGATCCCATGCTGTGTGACAGTGCCG 669
||||||| ||||||||||||||||| ||||| | |||||||||| ||||||||| | |||
Sbjct 642 GCCACGTAGATGTGGTTGAAAATTTCTCCACTGGGGATCCCATGTTGTGTGACACTTCCG 701
Query 670 CTGCAAC-ACATGATGGCGTATATAATTATTCCCTCAACAACATTCCGGATGCTGAAAAT 728
||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 702 CTGCAACGA-ATGATGGCGTATATAATTATTCCCTCAACAGCATTCCGGATGCTGAAAAT 760
Query 729 AATCTTGGCTTTTTCGACAATGGAGATAAAGAAAGCAACGATCTCTTCTATGGCTGGGGT 788
||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 761 GATCTTAGCTTTTTCGACAATGGAGATAAAGAAAAAAATGATCTCTTCTATGGCTGGGGT 820
Query 789 GACATAGGAAATTTTGAGGATGTGGACAACATGCTTAGGAGTTGTGATTCAACTTTCGGC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 821 GACATAGGAAATTTTGAGGATGTGGACAACATGCTTAGGAGTTGTGATTCAACATTCGGC 880
Query 849 TTGGATAGTCTTAATAATGAAGATGACTTAGGCTGGTTCTCTTCTGCTCC-GCCAAATGA 907
|||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||
Sbjct 881 TTGGATAGTCTTAATAATGAAGGTGACTTAGGGTGGTTCTCTTCTGC-CCAGCCAAATGA 939
Query 908 GGAGACAGAAGGCGCGATGACAGATGATATCAAACCAGACAAAGTGTTAGAAAATCAAAG 967
|||||||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 940 GGAGACAGCAGGCGCGATGACAGATGATCTCAAACCAGACAAAATGTTGGAAAATCAAAG 999
Query 968 AACCCCTATGTTACAGGTTGAAGATTTTTTGAACAACAGTGAGTCCAACCTTGCTGTTGA 1027
|||| ||||||| ||||||||||| |||||||||||||||||| |||||| |||||||||
Sbjct 1000 AACCGCTATGTTGCAGGTTGAAGACTTTTTGAACAACAGTGAGCCCAACCATGCTGTTGA 1059
Query 1028 AGATGAGTATGGATATACCATCGGGGGTGATTCAGCTCAAGGAAAATCATCAGAAAATGT 1087
|||||||||||||||||| || | || |||||||||||||||||||||||| |||||||
Sbjct 1060 AGATGAGTATGGATATACTATTGAGGACGATTCAGCTCAAGGAAAATCATCACAAAATGT 1119
Query 1088 ATTCGATACGAGTTCGCAAAAGAAGGATATATTGATGCTGGATGTAGAGGCAAATCTTGA 1147
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 ATTCGATACAAGTTTGCAAAAGAAGGATATATTGATGCTGGATGTAGAGGCAAATCTTGA 1179
Query 1148 GAAGAAGCAGACTGATCATCTTCATCATCTGGATGGGAAAAGTGATGGGTTCTCTGAGAA 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1180 GAAGAAGCAGACTGATCATCTTCATCATCTGGATGGGAAAAGTGATGGGTTCTCGGAGAA 1239
Query 1208 CAGTTTTACTCTACAGCACAGTGGTATTTCAAGGGAAATAATGGACACAAACCAGTATTA 1267
|||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1240 CAGTTTTACTTTACAGCACAGTGGTATTTCAAGGGAAATAATGGATACCAACCAGTATTA 1299
Query 1268 CCCTCCCTCCGCATTCCAACAACGAGGTGTGCCATACTCGCATTTCAATTGTGAGCAGCC 1327
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1300 CCCTCCCTCCGCATTCCAACAGCGAGATGTGCCATACTCGCATTTCAATTGTGAGCAGCC 1359
Query 1328 TTCTGATCAAGTATCAGCTTGTGAAAGTAAATCTGGTATTAAATCTGAGAACAAACCCAA 1387
||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TTCCGTTCAAGTATCAGCATGTGAAAGTAAATCTGGTATTAAATCTGAGAACAAACCCAG 1419
Query 1388 TCCTTCCTCTGCTTCAAATGAGTCATACACATCAAATCAGGCACAATCTGTCGAGAGCTT 1447
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1420 TCCTTCCTCTGCTTCAAATGAGTCATACACATCAAATCATGCACAATCAATCGAGAGCTT 1479
Query 1448 ACAAGGTCCAACTGTTGATGATCGGTGTAGGAAGGGCTATGAAACGAGAGCCAACTTGCT 1507
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1480 ACAAGGTCCAACTGTTGATGATCGGTTTAGGAAGGTCTTTGAAACGAGAGCCAACTTGCT 1539
Query 1508 GCCTGGGCAAGATATAG-CTCCTTCTTTTGCTGCAAATACCAAGAAGAGTAGTAAGACAA 1566
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 GCCTGGGCAAGATAT-GCCTCCTTCTTTTGCTGCAAATACCAAGAAGAGTAGTAAGACAG 1598
Query 1567 ACCCCATGGTGTTTCCTGATGCTGCTTCTATCCAGAAGATCGGGCTTGAGAATGACCACA 1626
|| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1599 ACTCCATGGTGTTTCCTGATGCTGCTCCTATCCAGAAGATTGGGCTTGAGAATGACCACA 1658
Query 1627 GAAAAGCTGCAACTGAATTGGAAACATCAAACATGCAGGGAAGTTCTTGTGTTAGTTCTG 1686
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1659 GAAAAGCTGCAACTGAATTGGAAACATCAAATATGCAGGGAAGTTCTTGTGTTAGCTCTG 1718
Query 1687 TTGTGGATGACATTTCACTGGAAGCAACAAGTTTTCGCCAGCTTCAACAAGTTATAGAAC 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 TTGTGGATGACATTTCACTGGAAGCAACAAGTTTTCGCCAGCTTCAACAAGTTATAGAAC 1778
Query 1747 AGTTGGATGTTAGGACAAAGCTTTGCATAAGAGACAGCTTATACCGATTGGCAAAAAGCG 1806
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1779 AGTTGGATGTTAGGACAAAGCTTTGCATAAGAGACAGCTTATACCGATTAGCAAAAAGTG 1838
Query 1807 CGGAACAGAGACACCATGGTGGAAACAGACCGGAGAAAGTTGCAGGCTCGCATCTGGTGA 1866
||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1839 CGGAACAGAGACATCATGGTGGAAACAGACCGGAGAAAGGCGCAGGCTCGCATCTCGTGA 1898
Query 1867 CTGATGAAACAGACAAGTACGCTGGATTCATGGATATCGAAACTGATACAAACCCGATAG 1926
||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 CTGGTGAAGCAGACAAGTATGCTGGATTCATGGATATCGAAACTGATACAAACCCGATAG 1958
Query 1927 ACCGATCCATAGCTCATTTGCTGTTTCACAGGCCCTCAGACTCATCGCTTTCATCAGATA 1986
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1959 ATCGATCGATAGCTCATTTGCTGTTTCACAGGCCCTCAGACTCATCTCTTTCATCCGATA 2018
Query 1987 ACAATGTTCTGTCTTATAAATCTCATCCAATGATTCCTCAGCCCAATAGTAGCCCGAGTC 2046
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2019 ACAATGTTCTGTCTTATAAATCTCATCCAATGATTCCTCAGCCCAATAGTAGTCCGAGCC 2078
Query 2047 TGAGGATGGAGAAACAAGAGGAAACTCCAGAACTTAGACCCGAAGCAGAAGTTGTAATAA 2106
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2079 TGAGGATAGAGAAACAAGAGGAAACTACAGAACTTAGACCCGAAGCAGAAGTTGTAACAA 2138
Query 2107 GTGACAACAATTAATGATGTCAACA-AAAACTGACTCTTTCACTGCTGAAGCATTCGAGA 2165
||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||||
Sbjct 2139 GTGACAACAATTAATGATGTCAA-ATAAAACTGGCTCTTTCATTGCTGAAGCATTCGAGA 2197
Query 2166 TATGGTTGTTAACACTAATCTCGATTTTGGCTAAGCGAAATTGCTCAGGTTAGTTACTAA 2225
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2198 TATTGTTGTTAACACTAATCTCGATTTTGGCTAAGCGAAATTGCTCAGGTTAGTTACTAA 2257
Query 2226 AATCCTGACTGCTTCTTTCATTAGAATCATGGATTTTGTAACATAGTTGTATT-A-GTGT 2283
||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 2258 AATCCTGACTGCTTCTT-CATTAGAATCATGGATTTTGTAACACAGTTGTATTTATGTGT 2316
Query 2284 TGAGATAACTTTCTGGTCTAGAATTCGGTTCGAACCTGATTGTACACCTGGTTGCTTGAA 2343
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 2317 TGAGATAACTTTCTGGTCTAGATTTCGGTTCGAACCTGATTGTACACCTGGTTGCTCGAA 2376
Query 2344 CCT 2346
|||
Sbjct 2377 CCT 2379
Score = 178 bits (96), Expect = 2e-43
Identities = 109/115 (95%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 2345 CTTTGCCTTTGTAATATGTTCAAGTTGTTAAGTAGAGGAAGAAGTAGAGACACATAGCAA 2404
|||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2423 CTTTACCTTTGTAATCTGTTCAAGTTGTTAAGTAGAGGAAGAAGTAGAGACA--TAGCAA 2480
Query 2405 TTCTGTAGATAAAGATGCTAGTTCGTTTTGTAATGCCATAAAATATTCTGCTGTG 2459
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 2481 TTCTGTAGATAAAGATGTTAGTTCGTTTTGTAATGCGATAAAATATTCTGCTGTG 2535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122006005376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5