BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496617
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2420 0.0
> AT5G64190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G40390.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:25679432-25681265 FORWARD LENGTH=1621
Length=1621
Score = 2420 bits (1310), Expect = 0.0
Identities = 1477/1559 (95%), Gaps = 5/1559 (0%)
Strand=Plus/Plus
Query 14 AGAAGTTCCCTGATGTATTCACTTGGATACAGAACATCCCACAAATCACCAAATGGCGCA 73
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 8 AGAAGTTCCCTGATGTATTCACTTGGATACAAAACATCCCACAGATCACCAAATGGCGCA 67
Query 74 CAACTTCTCTTTCCTTTTGCATTTGCCCTTCAACTTCTGATTTTCCGAATTCAAACCTAA 133
||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 68 CAACTTCTCTTCCCTTTTGCATTTGCCCTTCAACTTCTGATTTTCCAAATTCAACCCTAA 127
Query 134 ATCTCATAGCACAAAAGAACCCTAACCCTACAGTTCCCACTTTCTCCATCATCGTCCAAT 193
|||||| ||||||||||| ||||| ||||| |||| |||||||||||||||||||||||
Sbjct 128 ATCTCACAGCACAAAAGAGCCCTAGCCCTAAAGTTGTCACTTTCTCCATCATCGTCCAAT 187
Query 194 CTAATAATCATTCTCCTTTGTATCTTTGGACGACTAAACAGGACCTCAACATCAACCCAA 253
| ||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||
Sbjct 188 CCAATAATCATTCTCCTTTGTATCTTTGGACCACTAAACAAGAGCTCAGCATCAACCCAA 247
Query 254 ACTCACCAAACCCTTTCGATGAACAAACAATCGTCTCTTTGCTCTTCAATTTCGTCGAAT 313
|||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct 248 ACTCACCAAACCCTTTCGATGAACTAACAATCATCTCTCTCCTCTTCAATTTCGTCGAAA 307
Query 314 CTATCTTAACCTATACCTCTAATAGTTCCAACTATTCAACGATCAAAATCCCTAACCCCA 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 308 CTATCTTAACCTATACCTCTAATAGTTCCAACTATTCAACGATCAAAATCCCTAACTCCG 367
Query 374 ATTCATCCAAGATCGACGGTCTTAAAGACATATTCAACGCCGTGATTCTCACTCTCTTGT 433
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 368 ATTCATCCAAGATCGGCGGTCTTAAAGACATAGTCAACACCGTGATTCTCACTCTCTCGT 427
Query 434 TCGTCGTTTGCGTCTACGAAGCTCCTTTGTATCTCCGTGAAAACTGCCTCAATACGCTCA 493
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 428 TCGTTGTTTGCGTCTACGAAGCTCCTCTGTATCTCCGTGAAAACTGCCTCAATACCCTCA 487
Query 494 AGAACCATTTGGTTACTTGTCATGCACGGCAAGCGACCGTATCTCTGATGAAGCTTCTAG 553
||||||||||| ||||||||||| |||||| ||| || |||||||||||||||||||||
Sbjct 488 AGAACCATTTGATTACTTGTCATACACGGCGAGCTACTATATCTCTGATGAAGCTTCTAG 547
Query 554 GGTCTAATTTGGAAGAGCAGTGGATGAGAACGGTGAATCTAGCGTTGACAAATTGGATCA 613
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 548 GGTCTAATTTGGAAGAGCAGTGGATGAGAACAGTGAATCTAGCGTTTACAAATTGGATCA 607
Query 614 TTGAGCAGCGTCGTTGTGAGTCCACCAAG---ACAACAACTCCTTTGTTCTCTTACGCTG 670
| |||||||||||| || |||| |||||| ||||||||||||||||||||||||||||
Sbjct 608 TCGAGCAGCGTCGTAGTCAGTCAACCAAGATCACAACAACTCCTTTGTTCTCTTACGCTG 667
Query 671 TTTCGGCTTATGGATTGTGGAAAGTGCAATTGTATTGTCCGGTTGAAGCCATGGAAATAG 730
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 668 TTTCGGCTTATGGATTGTGGAAAGTGCAATTGTATTGTCCCGTTGAAGCCATGGAAGTAG 727
Query 731 AGAGATCGAGCAACCCAACGGCTGATTCGAGATTGTTGTTCTCTCTCAAGTTTAATCAGC 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 AGAGATCGAGCAACCCAACGGCTGATTCGAGATTGTTGTTCTCTCTCAAGTTTAATCAGC 787
Query 791 TTGAAGGTGTTATGCAATTCAATCACAAAGTTGTAGTTAGAGACAAGTGGATCGATGTGA 850
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 788 TTGAAGGTGTGATGCAGTTCAATCACAAAGTTGTAGTTAGAGACAATTGGATCGATGTGA 847
Query 851 TCGTGAAGATAGACAACATCAGATACGATGTAATAAAGCTTGTAAACGAGAAACTGATGT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TCGTGAAGATAGACAACATCAGATACGATGTAATAAAGCTTGTAAACGAGAAACTGATGT 907
Query 911 CGAGAAGAGGAGCAGGAGAGCACGAAAAGCATTTCCCATCAAGGATCTCTCTGCAACTAA 970
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CGAGAAGAGGAGCAGGGGAGCACGAAAAGCATTTCCCATCAAGGATCTCTCTGCAACTAA 967
Query 971 CTCCAACTCTCCAAACCGATTTCATAAGCGTTTCGGTTAGCAAATCATCAAACAATCCAG 1030
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 968 CTCCTACTCTCCAAACCGATTTCATTAGCGTTTCGGTTAGCAAATCATCAAACAATCCGG 1027
Query 1031 GACGAGAGTTTGAAGTCGAGAGATCTATCGAAGGCTCATTCGATCCACCAAACTCACTAG 1090
|| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1028 GAAGAGAGTTTGAAGTCGAGAGATCTATTGAAGGCTCGTTCGATCCACCAAACTCACTAG 1087
Query 1091 GCTTAAGAGTCGCTGGACGAGAAGCCTCGACCATGACAATGACCCCATGGAAATTCGAGC 1150
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1088 GCTTAAGAGTTGCTGGACGAGAAGCCTCAACCATGACAATGACCCCGTGGAAATTAGAGC 1147
Query 1151 AATCTGTGCTCGGCTACACAGCTAATCTAAACTGGATCTTGTACGATAGCAGCGTTGGAG 1210
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1148 AATCTGTGCTCGGCTACACAGCTAATCTAAACTGGATCTTGTATGATAGCAGCGTTGGAG 1207
Query 1211 GAAGAGAGGTTTTTTCGACAAAGCCCTCACGGTTTTCGATAATGAGCCCAAGGTCTTGGT 1270
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1208 GAAGAGAGGTTTTTTCGACAAAGCCGTCACGGTTTTCAATAATGAGCCCAAGGTCTTGGT 1267
Query 1271 TTAAGGATCGGTATGCAAGGGCGTATCGGTCATTTACGAGGAGAGGAGGAGTGATATTTG 1330
|||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1268 TTAAGGATAGGTATGCAAGAGCGTATCGGTCATTTACGAGGAGAGGAGGTGTGATATTTG 1327
Query 1331 CAGGGGATGAGTATGGAGAGAGTGTGGTGTGGAAAATTGGGAAAGGAGCATTGGGGAGAA 1390
||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct 1328 CAGGGGACGAGTATGGAGAGAGTGTGGTGTGGAAGATTGGAAAAGGAGCATTGGGGGGAA 1387
Query 1391 CAATGGAGTGGGAGATTAAAGGGTTTATTTGGTTGACATATTGGCCAAATAAGTATAAGA 1450
||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1388 CAATGGAGTGGGAGATTAAAGGGTTTATTTGGTTGACTTACTGGCCAAATAAGTACAAGA 1447
Query 1451 CTTTTTACCATGAGACTCGGAGATTGGAGTTTACACAGCTTCTTAATCTCACCATTGCTT 1510
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 CTTTTTACCATGAGACTCGTAGATTGGAGTTTACACAGCTTCTTAATCTCACCATTGCTT 1507
Query 1511 AACCT-AAACCAAGAACATGTTATTACTTCTTTGTGATTTAAACTTTACCTTGGTAAAG 1568
||| | |||| || |||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 1508 AACTTTAAACAAA-AACATGTTATTACTTCTTTGTGATCTCAACTTTACATTGGTAAAG 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77409240390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5