BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496619
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of huma... 1847 0.0
> AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681202-25683641 REVERSE LENGTH=1457
Length=1457
Score = 1847 bits (1000), Expect = 0.0
Identities = 1193/1280 (93%), Gaps = 37/1280 (3%)
Strand=Plus/Plus
Query 37 CTCCCAGTCTCTCCGCCGGCGGGAAAACTATGTCGCACTTCGGAAGGTCAGGTCCACCGG 96
|||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 60 CTCCCAATTTCTCCGCCGGCGGGAAAACCATGTCGCACTTCGGAAGGTCAGGTCCACCGG 119
Query 97 ATATCAGCGACACCTACTCGCTTCTCGTCCTTAACATAACCTTCCGTACGACTGCTGATG 156
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 ATATCAGCGACACCTACTCACTTCTCGTCCTTAACATCACCTTCCGTACGACTGCTGATG 179
Query 157 ATCTCTATCCTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTCTTTATTCCCAGAGATC 216
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 ATCTCTATCCTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTGTTTATTCCCAGAGATC 239
Query 217 GAAGGACTGGTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGATGAAGCTC 276
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 GAAGGACTGGTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGACGAAGCTC 299
Query 277 ACAAAGCAGTGGAAAGGCTTGATGGAAGGGTTGTTGATGGCCGAGAGATAACTGTTCAGT 336
|||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||
Sbjct 300 ACAAAGCAGTGGAAAGGCTTGATGGAAGAGTTGTTGATGGCAGAGAAATAACTGTTCAGT 359
Query 337 TTGCGAAATATGGGCCAAATGCTGAAAAGATTTCCAAAGGAAGGGTTGTGGAACCACCAC 396
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 360 TTGCGAAATATGGGCCAAATGCTGAAAAAATTTCCAAAGGAAGAGTTGTGGAACCACCGC 419
Query 397 CAAAGTCACGAAGATCGAGAAGCCGTAGTCCTAGGAGGAGTCGTAGTCCTCGGAGGAGCC 456
| |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 420 CGAAGTCACGAAGATCTAGAAGCCGTAGTCCTAGGCGGAGTCGTAGTCCTAGGAGGAGCC 479
Query 457 GAAGCCCGCCTAGACGCCGTAGTCCTAGAAGAAGCCGTAGTCCTCGTAGGAGGTCCCGAG 516
| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 480 GTAGCCCGCCTAGACGTCGTAGTCCCAGAAGAAGCCGCAGTCCTCGTAGGAGGTCCCGAG 539
Query 517 ATGATTACAGGGAAAAAGACTACCGGAAGAGGAGCAGGAGCAGAAGCTATGAGAGGCGTG 576
|||| || ||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 540 ATGACTATAGGGAAAAAGACTACCGGAAGCGGAGCAGGAGCAGAAGCTATGACAGGCGTG 599
Query 577 AAAGGCATCAGGAGAAGGATAGAGATCATCGTCGTCGAACTAGGTCTCGTAGTGCCAGCC 636
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 AAAGGCATGAGGAGAAGGATAGAGATCATCGTCGTCGCACTAGGTCTCGTAGTGCCAGCC 659
Query 637 TAGATGACAAACGCAGAGTCAGAGGCCGTTATGATGATGAGAGCCGCAGTCACAGTCGCT 696
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 660 CAGATGAAAAACGCAGAGTCAGAGGCCGTTATGATAATGAGAGCCGCAGTCACAGTCGTT 719
Query 697 CCTTGAGTGCATCTCCTGCTCGCCGCAGCCTCAGCCCTAGAAGTTCCTCCCCACAAAAAA 756
|||||||||||||||||||||| | | | |||||||||||||||||||||||| ||||
Sbjct 720 CCTTGAGTGCATCTCCTGCTCG-C-C-G---CAGCCCTAGAAGTTCCTCCCCACAGAAAA 773
Query 757 CCTCTCCTCCTAGAGAAGTTTCTCCTGATAAGCGTAGCAATGAGAGGTCTCCATCTCCTC 816
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CCTCTCCTGCTAGAGAAGTTTCTCCTGATAAGCGTAGCAATGAGAGGTCTCCATCTCCTC 833
Query 817 GTCGCAGCCTCAGCCCAAGAAGCCCAT-CTTTGCAAAAGGCCTCTCCTTCTAAGGAGGTG 875
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 834 GTCGCAGCCTCAGCCCAAGAAGCCC-TGCTTTGCAAAAGGCCTCTCCTTCTAAGGAGATG 892
Query 876 TCTCCTGAAAGGCGTAGCAATGAGAGGTCCCCGTCTCCTGGTAGCCCTTCTCCCCTGGGC 935
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||
Sbjct 893 TCTCCTGAAAGGCGTAGCAATGAGAGGTCCCCATCTCCTGGTAGCCCTGCTCCTCTGCGC 952
Query 936 AAAGTTGATGCTGCTTCTCGAAGTCAATCTCCTTATGCTGCGGAATGACTGCAGCCACTT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AAAGTTGATGCTGCTTCTCGAAGTCAATCTCCTTATGCTGCGGAATGACTGCAGCCACTT 1012
Query 996 GTGAAA-TGA-A------A--A--A----CACGTTTGCTTGTACTGATGATGTTTCATCA 1039
|||||| ||| | | | | |||||||||||||||||||||||||||||||
Sbjct 1013 GTGAAAGTGATACGGTGTATGATGAAAAACACGTTTGCTTGTACTGATGATGTTTCATCA 1072
Query 1040 TCAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCTCTGGTTCGAGAAAAG 1099
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TTAAGCACTGGAACGTCTACCCTCTGTAGTATTACTTGCTTTCCTCTGGTTCGAGAAAAG 1132
Query 1100 AATTGACTTGGAAGATGGCACAACCATGTTGAGATTGTAGCTGTTGATG-CTGTTTATGA 1158
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1133 AATTGACTGGGAAGATGGCACAACCATGTTGAGATTGTAGCTGTTGATGGCTGTTTATGA 1192
Query 1159 AACTGTAGATGATCGATGCTGTTTATGAAACCGTAGATGTTCGATGCTGGTCACAGCAAT 1218
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1193 AACTGTAGATGATCGATGCTGTTTATGAAACCGTAGATGATCGATGCTGGTCACAGCTAT 1252
Query 1219 CTGCTTAAACTCCCCT--TC-TTGT-T-GCCCAATGCTTACTTAGAAGGGCCTGGCTCGT 1273
|||||| |||| | || |||| | || |||||||| ||||||| ||| ||||
Sbjct 1253 CTGCTTTAACTAGTATCATCCTTGTGTCGCT-AATGCTTA----GAAGGGC-TGGTTCGT 1306
Query 1274 TTAGTTTTCAATCT-AAGTT 1292
| |||||||||||| |||||
Sbjct 1307 TGAGTTTTCAATCTTAAGTT 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5