BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496620
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64210.1 | Symbols: AOX2 | alternative oxidase 2 | chr5:2568... 1439 0.0
> AT5G64210.1 | Symbols: AOX2 | alternative oxidase 2 | chr5:25683965-25685664
REVERSE LENGTH=1062
Length=1062
Score = 1439 bits (779), Expect = 0.0
Identities = 973/1061 (92%), Gaps = 36/1061 (3%)
Strand=Plus/Plus
Query 20 CTTTACGAGCTCTGCTTGTCTGCGGCGGAGGAAACTGTAACATGTTCGTGAGTTCTGTTT 79
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 26 CTTTACGAGTTCTGCTTGTCTGCGGCAGAGGAAACTGTAACATGTTCGTGAGTTCTGTTT 85
Query 80 CCGCCGCCTCCGTTATGAAAAGTCCGTATGAGAGAACGAAACCGATGCGAATTCATGATT 139
|| || |||| |||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 86 CCTCCACCTCTGTTATGAAAAGTCCGTATGAGATAACGGCACCGATGCGAATTCATGACT 145
Query 140 GGTGCGGCCGTTTTGGTGATTTTAAGATTGGTTCTAAGCATGTGCAAGGAGATTTCAAAT 199
|||||||| ||||||| ||||| ||||| || |||||||||||||||||| |||| || |
Sbjct 146 GGTGCGGCGGTTTTGGCGATTTCAAGATCGGCTCTAAGCATGTGCAAGGAAATTTTAACT 205
Query 200 TGAGGTGGA-GGAGGATGAGTTCTGCATCAGCGACGGAGAATAAAGATGAAAATTCGACG 258
||||||||| || | |||||||||||||| |||| |||||| ||||||||||||| ||||
Sbjct 206 TGAGGTGGATGG-GTATGAGTTCTGCATCGGCGATGGAGAAGAAAGATGAAAATTTGACG 264
Query 259 GTGAAGAAGGATCAAAATGGCGGTGGATCGGTGGCGGTTCCAAGTTATTGGGGAATAGAG 318
|| ||||||| |||||| ||||| || || || |||||||||||||||||||||||||||
Sbjct 265 GTAAAGAAGGGTCAAAACGGCGGGGGGTCAGTAGCGGTTCCAAGTTATTGGGGAATAGAG 324
Query 319 ACAGCAAAGATGAAAATTACTCGGAAAGATGGATCGGATTGGCCTTGGAACTGTTTTATG 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ACAGCAAAGATGAAAATTACTCGGAAAGATGGATCGGATTGGCCTTGGAACTGTTTTATG 384
Query 379 CCATGGGAGACTTATCAAGCAAATTTGTCGATAGATTTGAAGAAGCACCACGTTCC---G 435
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 385 CCATGGGAGACTTATCAAGCAAATCTGTCGATAGATTTGAAGAAGCACCACGTTCCGAAG 444
Query 436 -A-A---CCGACAAAATCGCTTACCGGATAGTCAAGCTCCTCCGTATTCCCACAGATATA 490
| | |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 445 AATATCGCCGACAAAGTCGCTTACCGGATTGTCAAGCTCCTCCGTATTCCCACCGATATA 504
Query 491 TTTTTCCAGGCATGACCCTCGCATTACAAAAGACGATATGGATGCAGAGCAATGATATGC 550
|| | | || | | |||||||||||||||||||| ||| ||||
Sbjct 505 ---TT-------T-----T----TT-C-AGAGACGATATGGATGCAGAGCGATG--ATGC 541
Query 551 TAGAGACAGTAGCCGCAGTACCAGGAATGGTCGGAGGAATGCTTCTCCACCTAAAATCAA 610
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 542 TAGAGACAGTAGCTGCAGTACCAGGAATGGTTGGAGGAATGCTTCTTCACCTAAAATCAA 601
Query 611 TCCGGAAATTCGAACATAGTGGCAGTTGGATCAAAGCATTACTAGAAGAAGCAGAGAACG 670
|||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 602 TCCGAAAATTCGAACATAGCGGCGGTTGGATCAAAGCATTACTCGAAGAAGCAGAGAACG 661
Query 671 AGAGGATGCATCTAATGACGATGATGGAGTTAGTCAAACCCAAATGGTACGAGCGTCTTC 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGAGGATGCATCTAATGACGATGATGGAGTTAGTCAAACCCAAATGGTACGAGCGTCTTC 721
Query 731 TAGTGATGCTTGTTCAAGGAATATTC---AACTCTTTTCTCGTTTGTTACGTGATGTCGC 787
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |
Sbjct 722 TAGTGATGCTTGTTCAAGGAATATTCTTCAACTCTTTTTTCGTTTGTTACGTGATTTCCC 781
Query 788 CGCGGTTAGCTCATCGGGTCGTTGGATATTTAGAAGAAGAAGCTATACATTCTTACACCG 847
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 782 CGCGGTTAGCTCATAGGGTCGTTGGATATTTAGAGGAAGAAGCTATACATTCTTACACCG 841
Query 848 AGTTTCTTAAAGATATCGACGATGGGAAGATCGAGAATGTTGCCGCGCCCGCGATTGCTA 907
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 842 AGTTTCTTAAAGATATCGACAATGGGAAGATCGAGAATGTTGCCGCGCCCGCGATTGCTA 901
Query 908 TTGATTATTGGAGATTGCCTAAAGATGCTACGTTGAAAGATGTCGTCACAGTGATTCGTG 967
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 902 TTGATTATTGGAGATTGCCTAAAGATGCTACGTTGAAAGATGTTGTAACGGTGATTCGTG 961
Query 968 CTGATGAAGCTCATCATCGAGATGTCAACCATTTTGCTTCTGACATTCGCAATCAAGGAA 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CTGATGAAGCTCATCATCGAGATGTCAACCATTTTGCTTCTGACATTCGCAATCAAGGAA 1021
Query 1028 AAGAGTTGCGAGAAGCAGGAGCTCCGATTGGTTATCACTAA 1068
|||||||||||||||||| ||||||||||||||||||||||
Sbjct 1022 AAGAGTTGCGAGAAGCAGCAGCTCCGATTGGTTATCACTAA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5