BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496623
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1611 0.0
> AT5G64230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant
structures; EXPRESSED DURING: 4 anthesis, petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G19920.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25692453-25694053
FORWARD LENGTH=1403
Length=1403
Score = 1611 bits (872), Expect = 0.0
Identities = 992/1050 (94%), Gaps = 8/1050 (1%)
Strand=Plus/Plus
Query 328 TCGTCTCTTTCGCAAACCCTAATTCGTCgaagaagaagaagaagaaTAAGATGCTGGTGA 387
||||||||||||| |||||| |||| ||||||| |||||||||||||||||| |||||||
Sbjct 328 TCGTCTCTTTCGCCAACCCTTATTCATCGAAGACGAAGAAGAAGAATAAGATACTGGTGA 387
Query 388 TCAGCGATTGCGAAGAATCGGGAATCGGTCGAGCGATTTGGCAGCTATTGTCGGCGATGA 447
||| | |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 388 TCAACCATTGCGAAGAATCGGGAATCGGTCGAGCAATTTGGCAGTTATTGTCAGCGATGA 447
Query 448 ATGAAATTCCGGTGAGTTCTAGAAAGTACCAAGTGGTTCGATCGTTGGCGGAGAGACTAA 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 ATGAAATTCCGGTGAGTTCTAGAAAGTACCAAGTGGTTCGATCGTTGGCGGAGAGACTAA 507
Query 508 TCGACGAGAATCACGGAGAGAACTCAATCGCCTTGTTTGATTTGAACCGTAGGGTTTTAA 567
|| |||| ||||| ||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 508 TCAACGATAATCAAGGAGAAAACTCAGTCGCCTTGTTGGATTTGAACCGTAGGGTTTTAA 567
Query 568 ACGCGTCGTTTCGTACAACTCTAAGCCGGTTAGAGGCGGCGGTTGAGCGTAACAGTAACC 627
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 568 ACGCGTCGTTTCGTACAACTCTAAGCCGGTTAGAGACGGCGGTTGAGCGTAACCCTAACC 627
Query 628 GGAGAGATATAGGTGAACCGGTTCGTCGTGGATTAAACCGGGTTGTGAGAGCTGCGGTTA 687
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 628 GGAGAGATATAGATGAACCGGTTCGTCGTGGATTAAACCGGGTTGTCAGAGCTGTGGTTA 687
Query 688 GAGCCGTGGGAGATGGATTTATCGGTTGGGGTGGAGAAGAGACGGCGGATCAGACGGCGG 747
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GAGCCGTGGGAGATGGGTTTATCGGTTGGGGTGGAGAAGAGACGGCGGATCAGACGGCGG 747
Query 748 AAACGTCGGAGAAACTGGCGGCGGAACTGCTTTGGCTGGCTGAGAAGATGGCGGTTTATG 807
|||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct 748 AAACGTCGGAGAAACTGGCGGCGGAATTGCTTTGGTTGGCGGAGAAGATGGCGGTTTATG 807
Query 808 GATTCGTGGATGAAGCCGTTGAGAAATGGGCTTCGGCTTCTAACTTGGCTTGGCTTGCTC 867
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 808 GATTCGTGGATGAAGCCGTTGAGAAATGGGCTTCGGCTTCTAACTTAGCTTGGCTTGCTC 867
Query 868 TTTCGTCTGAGCCACGTCTTCAATGCTCTTTGGTCCAAATTTCTGCTTTATTGTTCaaag 927
|||||| ||||||||||||||||||||||||| ||||||| ||||| ||| | |||||||
Sbjct 868 TTTCGTGTGAGCCACGTCTTCAATGCTCTTTGATCCAAATCTCTGCCTTACTATTCAAAG 927
Query 928 aagccaaggacattaaagagggaa--g-agaagaagaaggagaggaagcaaaattgagag 984
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 928 AAGCCAAGGACATTAAAAAGGGAAGCGAAGAAGAAGAAGGAGAGGAAGCAAAATTGAGAG 987
Query 985 agataaagaagaagaTGCTTATTTCGTGGATTCCATTGCTGTGCCGGGCCAGCAACGGAG 1044
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 988 AGATAAAGAAGAAGATGCTTATTTCGTGGATTCCGTTGCTGTGCCGAGCCAGCAACGGAG 1047
Query 1045 CGGATAAACCGGTGTTAAGAAGTGCGGAACGAGCGGATCTCGAGAAAGTGTTGGAGAAGA 1104
| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1048 CTGATAAACCGGTGTTAAGAAGTGCGGAACGAGCGTATCTAGAGAAAGTGTTGGAGAAGA 1107
Query 1105 TGATATCTGAACTAAAAGAAGAGGAGCAAGAAAGAGTTCTCTCACTCTGGCTTCACCATT 1164
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1108 TGATATCTGAACTAAAAGAAGAGGAGCAAGAACGAGTTCTCTCACTCTGGCTTCACCATT 1167
Query 1165 ACACACACTGCTCTTCCTCTGACTGGCCTGACCTCAACGGCTCTTATGTTCGTTGGTGCC 1224
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 ACACACATTGCGCTTCCTCTGACTGGCCTGACCTCAACGGCTCTTATGTTCGTTGGTGCC 1227
Query 1225 ATTCTTCTCGCCAGCTTTTGCTCTTACGCCATTCTTCTCATATATCTCCTTGATA--CAC 1282
|||||||||||||||||||||||||| || | || |||||||||||||||||||| |||
Sbjct 1228 ATTCTTCTCGCCAGCTTTTGCTCTTAGGCTAGTCGTCTCATATATCTCCTTGATAAACAC 1287
Query 1283 AAGTAGAA-GTTGCTACAATATTTTCAATAGCATTGATCTTTTGTACATCTTAAT--TAT 1339
|||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 1288 AAGTAGAAAGTTGCTACAATATTTGCAATAGCATTGATCTTTTGTATGTCTTAATCATAT 1347
Query 1340 GTACTAAGTTTTGCCCTTTAGAAATTACTT 1369
||||||||||||||||||||||||| ||||
Sbjct 1348 GTACTAAGTTTTGCCCTTTAGAAATCACTT 1377
Score = 401 bits (217), Expect = 7e-111
Identities = 238/248 (96%), Gaps = 1/248 (0%)
Strand=Plus/Plus
Query 1 AGttt-ttttGTAACCGTAATTGTAATTAAAGAGAAGAAAGAATGGAGAAGCTGTCATCA 59
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 78 AGTTTCTTTTGTAACCGTAATTGTAATTAAAGAGAAGAAATAATGGAGAAGCTGTCATCA 137
Query 60 GCTGCTGTGGTTCCTCAGCTTCTCCGCAACATTATCATCGCCGTCGTTGTTTTCGCCGAT 119
|||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||| |||
Sbjct 138 GCTGCTGTAGTTCCTCAGCTCCTCCGCAACATCATCGTCGCCGTCGTTGTTTTCGCTGAT 197
Query 120 GAATCTCTCCTTCAGATCTCCGGGAATTCAAAGCTCCTCGAGAAACTCCGTGTATTTCTC 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GAATCTCTCCTTCAAATCTCCGGGAATTCAAAGCTCCTCGAGAAACTCCGTGTATTTCTC 257
Query 180 GTCACATGTTTCCTCTTCTTCTTACGCTCTCTTCCTTCAGTCGTCTCTTTCGCAAACCCT 239
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 258 GTCACGTGTTTCCTCTTCTTCTTACGCTCTCTTCCTTCAATCGTCTCTTTCGCAAACCCT 317
Query 240 AATTCGTC 247
||||||||
Sbjct 318 AATTCGTC 325
Score = 93.5 bits (50), Expect = 5e-18
Identities = 50/50 (100%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 276 ATCTCCGGGAATTCAAAGCTCCTCGAGAAACTCCGTGTATTTCTCGTCAC 325
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 ATCTCCGGGAATTCAAAGCTCCTCGAGAAACTCCGTGTATTTCTCGTCAC 262
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 328 TCGTCTCTTTCGCAAACCCTAATTCGTC 355
||||||||||||||||||||||||||||
Sbjct 298 TCGTCTCTTTCGCAAACCCTAATTCGTC 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419331935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5