BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496633
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64310.1 | Symbols: AGP1, ATAGP1 | arabinogalactan protein 1... 848 0.0
> AT5G64310.1 | Symbols: AGP1, ATAGP1 | arabinogalactan protein
1 | chr5:25721933-25722646 FORWARD LENGTH=714
Length=714
Score = 848 bits (459), Expect = 0.0
Identities = 629/705 (89%), Gaps = 36/705 (5%)
Strand=Plus/Plus
Query 1 aacaacaacaacagagcaaaaacactcccaaacc-ctaaaa-aa-ca-aaGAAGCTAAAT 56
||||||||||||| |||||||||||||||||||| |||| || | ||||||||||||
Sbjct 2 AACAACAACAACAAAGCAAAAACACTCCCAAACCAAAAAAAGAAGAAGAAGAAGCTAAAT 61
Query 57 TCGAATCTCTCTC-TTTCTGAAAAATGGCTTTCTCGAAATCTCTAGGGTTTGTTCTTCTC 115
||||||||||||| ||| ||||| |||||||| || |||||||||| |||||||||||||
Sbjct 62 TCGAATCTCTCTCTTTTTTGAAATATGGCTTTTTCCAAATCTCTAGTGTTTGTTCTTCTC 121
Query 116 GCTGCTCTTTTGATTTCTTCCACGGTGGCTCAGTCTCCAGCTCCAGCTCCATCTAACGTC 175
||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||
Sbjct 122 GCTGCTCTTTTGATTTCTTCCGCAGTGGCTCAATCTCCGGCTCCAGCTCCATCTAACGTC 181
Query 176 GGAGGAAGACGGATCTCACCGGCTCCTTCACCTAAGAAGACGACTTCTCCTGCACCTGCA 235
||||| |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct 182 GGAGGTAGACGGATCTCACCGGCTCCTTCACCTAAGAAGATGACTGCTCCTGCTCCTGCA 241
Query 236 CCTGAAGTTTCTCCTTCTCCTTCTCCGGTAGCCGCATTGACTCCAGAATCCTCTGCTTCA 295
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 242 CCTGAAGTTTCTCCTTCTCCTTCTCCGGCAGCCGCATTGACTCCAGAATCCTCTGCTTCA 301
Query 296 CCTCCATCGCCGCCTCTTGCTGATTCTCCTACCTCTGACTCACCTGCTTTATCTCCGTCC 355
|| |||||||||||||| ||||||||||||||| ||||||| || ||||| ||||| ||
Sbjct 302 CCACCATCGCCGCCTCTAGCTGATTCTCCTACCGCTGACTCCCCGGCTTTGTCTCCATCT 361
Query 356 GCAATCTCCGATTCGCCTACTGAAGCTCCTGGTCCTGCTCAGGGCGCCGCCGTTTCGAAC 415
|| ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 362 GCGATCTCCGATTCTCCGACTGAAGCTCCTGGTCCTGCTCAGGGCGGCGCCGTTTCGAAC 421
Query 416 -AGTTACG-CAGTCTTCGGATCTGTGGCGGTTATGTTAACCGCTGCCGTTTTGGTTATCT 473
| || || |||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 422 AAATT-CGCCAGT-TTCGGATCTGTGGCGGTTATGTTAACTGCTGCCGTTTTGGTTATCT 479
Query 474 AGGTTGTTCCGATGAATGAAGCTTCTTTgattttatttatttattttagatatat-atga 532
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 480 AGGTTGTTCCGATCAATGAAGCTTCTTTGATTTTATTTATTTATTTTAGATATATTA-GA 538
Query 533 gttttgtgagagagatgatcattccttatttttctcttctttttatt-tcatcttagaat 591
||||||||||||||||||| |||| ||||||||||||||||| |||| | |||| ||||
Sbjct 539 GTTTTGTGAGAGAGATGATGATTCATTATTTTTCTCTTCTTTCTATTATTTTCTTTGAAT 598
Query 592 atttttctttctt----t--t--t--g----t----atctatccgatatttat--at--a 629
||||||||||||| | | | | | |||||||| |||||||| || |
Sbjct 599 ATTTTTCTTTCTTCGGCTGATCCTATGCGCGTTTGTATCTATCCAATATTTATCTATCTA 658
Query 630 t--gatttatcagattttctAAATAACTTTCTATGGAAATATTAA 672
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TATGATTTATCAGATTTTCTAAATAACTTTCTATGGAAATATTAA 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5