BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496641
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64350.1 | Symbols: FKBP12, ATFKBP12 | FK506-binding protein... 802 0.0
> AT5G64350.1 | Symbols: FKBP12, ATFKBP12 | FK506-binding protein
12 | chr5:25734598-25736071 REVERSE LENGTH=632
Length=632
Score = 802 bits (434), Expect = 0.0
Identities = 505/538 (94%), Gaps = 9/538 (2%)
Strand=Plus/Plus
Query 1 gagagagagagaagatatagagagaTGGGTGTGGAGAAGGAAGTCATCAGACCCGGCACC 60
|||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
Sbjct 60 GAGACAGAGAGAAGATAT--AGAGATGGGTGTGGAGAAGCAAGTCATCAGACCCGGCAAC 117
Query 61 GGTCCTAAACCCGCTCCGGGTCAAACCGTCACCGTCCATTGCACCGGATTCGGGAAAGGT 120
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 118 GGTCCCAAACCCGCTCCGGGCCAAACCGTCACCGTCCATTGCACCGGATTCGGGAAAGAT 177
Query 121 GGTGATCTGTCCCAGAAGTTCTGGAGTACAAAGGACGAGGGGCAAAAACCTTTCTCGTTC 180
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 178 GGTGATCTATCCCAGAAGTTCTGGAGTACAAAGGACGAGGGACAAAAACCTTTCTCGTTC 237
Query 181 CAAATCGGTAAAGGTGCTGTGATCAAAGGATGGGATGAAGGCGTTATCGGAATGCAAATT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAAATCGGTAAAGGTGCTGTGATCAAAGGATGGGATGAAGGCGTTATCGGAATGCAAATT 297
Query 241 GGAGAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCTTACGGCGCTGGTGGATTTCCG 300
||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct 298 GGAGAGGTTGCTCGCTTGCGGTGCTCATCGGATTACGCATATGGCGCTGGTGGATTTCCG 357
Query 301 GGATGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAGATCGAAGTACTGAGCGTGCAG 360
| |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 358 GCATGGGGGATCCAGCCAAACTCTGTTCTCGACTTTGAAATCGAAGTACTGAGCGTGCAG 417
Query 361 TAATGATCTCCCCAGCTCCTAAACTGTGGGAAGATTATTAATCAACCCTTTATCTTTATC 420
|||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 418 TAATGATCTCCCCAGCTCCTAAACTGTGGGTAGATTATTAAACAACCCTTTATGTTTATT 477
Query 421 GCTTCTGGGATCTTGATGAAACAAAACTTTGTGATGTCATTGCTCTTCTAAAAAACTCTT 480
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 478 GCTTCTGGGATCTTTATGCAACAAAACTTTGTGATGTCATTGCTCTTCTAAAA--CTCTT 535
Query 481 GGACCACGTTTTTATCTAAATAAAAGA-----CCCGTCTCGTGTTTCAGTTCCAATGT 533
|||| |||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 536 GGACAACGTTTTTATCTAAATAAAAGAAAAGACCCGTCTCGTGTTTCAGTTGGAATGT 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25518946676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5