BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496643 Length=1587 Score E Sequences producing significant alignments: (Bits) Value AT5G64360.3 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1291 0.0 AT5G09540.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 366 3e-100 > AT5G64360.3 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:25737071-25738667 REVERSE LENGTH=1597 Length=1597 Score = 1291 bits (699), Expect = 0.0 Identities = 850/918 (93%), Gaps = 30/918 (3%) Strand=Plus/Plus Query 1 ACGGGGAGAGAGGAAAAACGAAGGGGAACaaaaaaaaaaaGGGGATATGGTAGGCGGACG 60 |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 20 ACGGGGAGAGAGGAAAAACGAAAGGGAACAAAAAGAAATAGGGGATATGGTAGGCGGACG 79 Query 61 CGGCGGAGTTGGC---GGTAGTGGTAACAGAGCGGAGGCGGATCGGTGGCTTGTTACATC 117 ||||||||||||| ||| |||||||||||| ||||||||||| ||||||||| ||||| Sbjct 80 CGGCGGAGTTGGCGGTGGTGGTGGTAACAGAGTGGAGGCGGATCAGTGGCTTGTAACATC 139 Query 118 GGAGAAGCTTCTAGCGTCTAGTGATCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATG 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 GGAGAAGCTTCTAGCGTCTAGTGATCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATG 199 Query 178 CGAAGCTGACCCGACCCGAGCAGAGGCAGCGGACTACATCCTCGCAATCTGCGACATTCT 237 |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| Sbjct 200 CGAAGCTGACCCGACCCGAGCAGAAGCTGCAGACTACATCCTCGCAATCTGCGACATTCT 259 Query 238 TCTCGCCGGAGAGACTCGTCTAGGTGATTCCAACTTGCCGGACTGGTACGCCGTTCTCCG 297 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 260 TCTCGCCGGAGAGACTCGTTTAGGTGATTCCAACTTGCCAGACTGGTACGCCGTTCTCCG 319 Query 298 ACTCGGTCGTTTAGCACAAAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCT 357 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 ACTCGGTCGTTTAGCTCAAAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCT 379 Query 358 TCTCCTCAATCCTTCCGTTAATCGTCTCCCATTCGCCGATCGAGCTTTTAAAATCGTCTC 417 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 380 TCTCCTCAATCCTTCCGTTAATCGTCTCCCATTCGCCGATCGAGCTCTTAAAATCGTCTC 439 Query 418 CGATGCTTGGTTCGTTCTCTCTGATCCGTCCAAGAAGTCATTCTACGACCGAGAATTGCA 477 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 440 CGATGCTTGGTTCGTTCTCTCTGATCCGTTCAAGAAATCATTCTACGACCGAGAATTGCA 499 Query 478 ACTGAGTCAACTCGGTCAATCTGGTTTCCATCCCCAAACCCAATCGAATCAAAATTTCCA 537 ||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| Sbjct 500 ACTTAGTCAACTCGGTCAATCTGGATTCCATCCTCAAACCCAATCGCATCAAAATTTCCA 559 Query 538 GTGG-AATC---C-----CACCGCCGTATTTCCGCCAC---------AG-GC-----TGG 573 |||| || | | ||||||||||| |||||||| || || ||| Sbjct 560 GTGGGAACCTAGCAGTAGCACCGCCGTATATCCGCCACCGCGGTCTCAGAGCCAGGCTGG 619 Query 574 GACCTCGACGGATCCTATGGCGACGAGCTTCTGGACTGCTTGCCCTTACTGTTTTGTTCT 633 ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct 620 GACCTCGGCGGATCCTATGGCGACGAGCTTCTGGACCGCTTGCCCTTACTGCTTTGTACT 679 Query 634 CTTTGAGTACCCTAAGGCTTACGAAGAATGTACTTTGAAATGTCAAGAATGTAGAAGAGC 693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 CTTTGAGTACCCTAAGGCTTACGAAGAATGTACTTTGAAATGTCAAGAATGTAGAAGAGC 739 Query 694 GTTTCAAGCTGTGACGATACCAAAACCTCCAGTAGACGACGGGAAAGACGACGAAGACGT 753 |||||||||||||||||||||||||||||| || || | | ||||||||||||||||| Sbjct 740 GTTTCAAGCTGTGACGATACCAAAACCTCCGGTGGATAA-G--AAAGACGACGAAGACGT 796 Query 754 TTACTTTTGCTCATGGGCTTTGTTTCCATTAGGGTTTTCCGGTGAATTTAAAACCCCAAG 813 |||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||| Sbjct 797 TTACTTTTGCTCATGGGCTTTGTTTCCATTGGGGTTTTCCGGTGAATTTCAAGCTCCAAG 856 Query 814 TTGGTCACCTATTTCACCTCTCTTTGCCTGTCCTCTGCAAAAGGTGGATGATGAAACAAG 873 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| Sbjct 857 TTGGTCACCTATTTCACCTCTCTTTGCCTGTCCTCTGCAAAAGTTGGATGGTGAACCAAA 916 Query 874 GAAGAGAAAGGAACCGGG 891 |||||||||||||||||| Sbjct 917 GAAGAGAAAGGAACCGGG 934 Score = 595 bits (322), Expect = 4e-169 Identities = 391/422 (93%), Gaps = 14/422 (3%) Strand=Plus/Plus Query 890 GGGAAAGAAACATCTGTGAGAAGTAACAAGAAACATGGAGTTG-AGACAGTCCAAAATGT 948 ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1059 GGGAAAGAAACATATGTGAGAAGTAACAAGAAACATGGAGTTGAAGA-AGTCCAAAATGT 1117 Query 949 AGAAAGTATCAGTAGTGCTAGCAATCACGC-G---C---T--TTCGGATGCT---GCAGT 996 |||||||||||||||||||||||||||||| | | | ||| ||||| || || Sbjct 1118 AGAAAGTATCAGTAGTGCTAGCAATCACGCGGTTTCAATTGCTTCAAATGCTGCGGCTGT 1177 Query 997 TGGTTCCTCATCCGGGGTTATGTCTAAACCAGGGAGTTATGTTACTAGAAAACGAATGGG 1056 ||| || ||| | ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1178 TGGGTCTTCAACTGGGGTTATGTCTAAACCAGGGAGTTATATTACTAGAAAACGAATGGG 1237 Query 1057 AACAGGAGCTAAGAACCTAGGCAGGTTGGATTTGAATGTGGAGTTTAGTAATGAAGTGGA 1116 |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1238 AACAGGCGCTAAGAACCTGGGGAGGTTGGATTTGAATGTGGAGTTTAGTAATGAAGTGGA 1297 Query 1117 AGAGCCTGGTGTTGCAGGTGGGAGAAATGAAGGCAATGGGATCGGAAGTAACAGGGAGGT 1176 |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1298 AGAGCCTGGTGTGGCAGGTGGGGGAAATGCAGGCAATGGGATCGGAAGTAACAGGGAGGT 1357 Query 1177 AGATCATATGGAAGGGATTGGGTTCTTTGAGGGACTTGATGAATTCTTGAATAGTTTGCC 1236 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1358 AGATAATATGGAAGGGATTGGGTTCTTTGAGGGACTTGATGAATTCTTGAATAGTTTGCC 1417 Query 1237 TATACTTTCTGTTGTTGGAGATGATAAGATCAAGGCTACTTAGTGAAGTAAGGCTTTTTC 1296 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1418 CATACTTTCTGTTGTTGGAGATGATAAGATCAAGGCTACTTAGTGAAGTAAGGCTTTTTC 1477 Query 1297 CT 1298 || Sbjct 1478 CT 1479 > AT5G09540.1 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:2962216-2963264 REVERSE LENGTH=1049 Length=1049 Score = 366 bits (198), Expect = 3e-100 Identities = 355/428 (83%), Gaps = 22/428 (5%) Strand=Plus/Plus Query 82 TAACAGAGCGGAGGCGGATCGGTGGCTTGTTACATCGGAGAAGCTTC-TAGCGTCTAGTG 140 ||||||||||||||| |||| || ||||| |||||||||||||| || | || || |||| Sbjct 27 TAACAGAGCGGAGGCAGATCAGTTGCTTGCTACATCGGAGAAGC-TCTTGGCTTCAAGTG 85 Query 141 ATC-TTCAAGGAGCAAAGACATTTGCGATCCGCGCATGCGAAGCTGACCCGA-CCCGAGC 198 | | |||| ||||||||||||||||||||||| ||||||||||||||||| | ||||| | Sbjct 86 A-CTTTCATGGAGCAAAGACATTTGCGATCCGTGCATGCGAAGCTGACCC-ATCCCGAAC 143 Query 199 AGAGGCAGCGGACTACATCCTCGCAATCTG-CGACATTCTTCTCGCCGGAGAGACT-CGT 256 ||| ||||| ||||| |||||||| ||| | ||||| ||| ||||||||||| ||| | Sbjct 144 AGACGCAGCTGACTATATCCTCGCCATC-GCCGACACTCTCCTCGCCGGAGAAACTAC-A 201 Query 257 CTAGGTGATTCCAACTTGCCGGACTGGTACGCCGTTCTCCGACTCGGTCGTTTAGCACAA 316 | || |||||||| | || ||||||||||| || || ||| || | || || | ||| Sbjct 202 ATCGGAGATTCCAAAGTACCAGACTGGTACGCGGTACTTCGAATCAGCCGCCTAACCCAA 261 Query 317 AACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCTTCTCCTCAATCCTTCCGT- 375 | |||||||||||||||||||||||||||||||||| ||||||||||||| | | | | Sbjct 262 AGCCCTGAACACGTCGCGACTCAGTACCGTAGACTCACTCTTCTCCTCAAAC-T-CAATA 319 Query 376 T-AATCGTCTCCCATTCGCCGATCGAGCTTTTAAAATCGTCTCCGATGCTTGGT-TCGTT 433 | |||||||| || |||||||||| ||| ||||| |||||||||||||||||| | || Sbjct 320 TCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAACTCGTCTCCGATGCTTGGTAT-GTC 378 Query 434 CTCTCTGATCCGTCCAAG-AAGTCA-TTCTACGACCGAGAATTGCAACTGAGTCAA-CTC 490 ||||||||||| |||||| || ||| || ||||| ||||| ||||| ||||||||| || Sbjct 379 CTCTCTGATCC-TCCAAGGAAATCAATT-TACGATCGAGAGTTGCAGCTGAGTCAAACT- 435 Query 491 GGTCAATC 498 |||||||| Sbjct 436 GGTCAATC 443 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78363050745 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5