BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496643
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64360.3 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1291 0.0
AT5G09540.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 366 3e-100
> AT5G64360.3 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:25737071-25738667 REVERSE LENGTH=1597
Length=1597
Score = 1291 bits (699), Expect = 0.0
Identities = 850/918 (93%), Gaps = 30/918 (3%)
Strand=Plus/Plus
Query 1 ACGGGGAGAGAGGAAAAACGAAGGGGAACaaaaaaaaaaaGGGGATATGGTAGGCGGACG 60
|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 20 ACGGGGAGAGAGGAAAAACGAAAGGGAACAAAAAGAAATAGGGGATATGGTAGGCGGACG 79
Query 61 CGGCGGAGTTGGC---GGTAGTGGTAACAGAGCGGAGGCGGATCGGTGGCTTGTTACATC 117
||||||||||||| ||| |||||||||||| ||||||||||| ||||||||| |||||
Sbjct 80 CGGCGGAGTTGGCGGTGGTGGTGGTAACAGAGTGGAGGCGGATCAGTGGCTTGTAACATC 139
Query 118 GGAGAAGCTTCTAGCGTCTAGTGATCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GGAGAAGCTTCTAGCGTCTAGTGATCTTCAAGGAGCAAAGACATTTGCGATCCGCGCATG 199
Query 178 CGAAGCTGACCCGACCCGAGCAGAGGCAGCGGACTACATCCTCGCAATCTGCGACATTCT 237
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 200 CGAAGCTGACCCGACCCGAGCAGAAGCTGCAGACTACATCCTCGCAATCTGCGACATTCT 259
Query 238 TCTCGCCGGAGAGACTCGTCTAGGTGATTCCAACTTGCCGGACTGGTACGCCGTTCTCCG 297
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 260 TCTCGCCGGAGAGACTCGTTTAGGTGATTCCAACTTGCCAGACTGGTACGCCGTTCTCCG 319
Query 298 ACTCGGTCGTTTAGCACAAAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCT 357
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ACTCGGTCGTTTAGCTCAAAACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCT 379
Query 358 TCTCCTCAATCCTTCCGTTAATCGTCTCCCATTCGCCGATCGAGCTTTTAAAATCGTCTC 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 380 TCTCCTCAATCCTTCCGTTAATCGTCTCCCATTCGCCGATCGAGCTCTTAAAATCGTCTC 439
Query 418 CGATGCTTGGTTCGTTCTCTCTGATCCGTCCAAGAAGTCATTCTACGACCGAGAATTGCA 477
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 440 CGATGCTTGGTTCGTTCTCTCTGATCCGTTCAAGAAATCATTCTACGACCGAGAATTGCA 499
Query 478 ACTGAGTCAACTCGGTCAATCTGGTTTCCATCCCCAAACCCAATCGAATCAAAATTTCCA 537
||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 500 ACTTAGTCAACTCGGTCAATCTGGATTCCATCCTCAAACCCAATCGCATCAAAATTTCCA 559
Query 538 GTGG-AATC---C-----CACCGCCGTATTTCCGCCAC---------AG-GC-----TGG 573
|||| || | | ||||||||||| |||||||| || || |||
Sbjct 560 GTGGGAACCTAGCAGTAGCACCGCCGTATATCCGCCACCGCGGTCTCAGAGCCAGGCTGG 619
Query 574 GACCTCGACGGATCCTATGGCGACGAGCTTCTGGACTGCTTGCCCTTACTGTTTTGTTCT 633
||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 620 GACCTCGGCGGATCCTATGGCGACGAGCTTCTGGACCGCTTGCCCTTACTGCTTTGTACT 679
Query 634 CTTTGAGTACCCTAAGGCTTACGAAGAATGTACTTTGAAATGTCAAGAATGTAGAAGAGC 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CTTTGAGTACCCTAAGGCTTACGAAGAATGTACTTTGAAATGTCAAGAATGTAGAAGAGC 739
Query 694 GTTTCAAGCTGTGACGATACCAAAACCTCCAGTAGACGACGGGAAAGACGACGAAGACGT 753
|||||||||||||||||||||||||||||| || || | | |||||||||||||||||
Sbjct 740 GTTTCAAGCTGTGACGATACCAAAACCTCCGGTGGATAA-G--AAAGACGACGAAGACGT 796
Query 754 TTACTTTTGCTCATGGGCTTTGTTTCCATTAGGGTTTTCCGGTGAATTTAAAACCCCAAG 813
|||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||
Sbjct 797 TTACTTTTGCTCATGGGCTTTGTTTCCATTGGGGTTTTCCGGTGAATTTCAAGCTCCAAG 856
Query 814 TTGGTCACCTATTTCACCTCTCTTTGCCTGTCCTCTGCAAAAGGTGGATGATGAAACAAG 873
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 857 TTGGTCACCTATTTCACCTCTCTTTGCCTGTCCTCTGCAAAAGTTGGATGGTGAACCAAA 916
Query 874 GAAGAGAAAGGAACCGGG 891
||||||||||||||||||
Sbjct 917 GAAGAGAAAGGAACCGGG 934
Score = 595 bits (322), Expect = 4e-169
Identities = 391/422 (93%), Gaps = 14/422 (3%)
Strand=Plus/Plus
Query 890 GGGAAAGAAACATCTGTGAGAAGTAACAAGAAACATGGAGTTG-AGACAGTCCAAAATGT 948
||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1059 GGGAAAGAAACATATGTGAGAAGTAACAAGAAACATGGAGTTGAAGA-AGTCCAAAATGT 1117
Query 949 AGAAAGTATCAGTAGTGCTAGCAATCACGC-G---C---T--TTCGGATGCT---GCAGT 996
|||||||||||||||||||||||||||||| | | | ||| ||||| || ||
Sbjct 1118 AGAAAGTATCAGTAGTGCTAGCAATCACGCGGTTTCAATTGCTTCAAATGCTGCGGCTGT 1177
Query 997 TGGTTCCTCATCCGGGGTTATGTCTAAACCAGGGAGTTATGTTACTAGAAAACGAATGGG 1056
||| || ||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1178 TGGGTCTTCAACTGGGGTTATGTCTAAACCAGGGAGTTATATTACTAGAAAACGAATGGG 1237
Query 1057 AACAGGAGCTAAGAACCTAGGCAGGTTGGATTTGAATGTGGAGTTTAGTAATGAAGTGGA 1116
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1238 AACAGGCGCTAAGAACCTGGGGAGGTTGGATTTGAATGTGGAGTTTAGTAATGAAGTGGA 1297
Query 1117 AGAGCCTGGTGTTGCAGGTGGGAGAAATGAAGGCAATGGGATCGGAAGTAACAGGGAGGT 1176
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1298 AGAGCCTGGTGTGGCAGGTGGGGGAAATGCAGGCAATGGGATCGGAAGTAACAGGGAGGT 1357
Query 1177 AGATCATATGGAAGGGATTGGGTTCTTTGAGGGACTTGATGAATTCTTGAATAGTTTGCC 1236
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AGATAATATGGAAGGGATTGGGTTCTTTGAGGGACTTGATGAATTCTTGAATAGTTTGCC 1417
Query 1237 TATACTTTCTGTTGTTGGAGATGATAAGATCAAGGCTACTTAGTGAAGTAAGGCTTTTTC 1296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CATACTTTCTGTTGTTGGAGATGATAAGATCAAGGCTACTTAGTGAAGTAAGGCTTTTTC 1477
Query 1297 CT 1298
||
Sbjct 1478 CT 1479
> AT5G09540.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:2962216-2963264 REVERSE LENGTH=1049
Length=1049
Score = 366 bits (198), Expect = 3e-100
Identities = 355/428 (83%), Gaps = 22/428 (5%)
Strand=Plus/Plus
Query 82 TAACAGAGCGGAGGCGGATCGGTGGCTTGTTACATCGGAGAAGCTTC-TAGCGTCTAGTG 140
||||||||||||||| |||| || ||||| |||||||||||||| || | || || ||||
Sbjct 27 TAACAGAGCGGAGGCAGATCAGTTGCTTGCTACATCGGAGAAGC-TCTTGGCTTCAAGTG 85
Query 141 ATC-TTCAAGGAGCAAAGACATTTGCGATCCGCGCATGCGAAGCTGACCCGA-CCCGAGC 198
| | |||| ||||||||||||||||||||||| ||||||||||||||||| | ||||| |
Sbjct 86 A-CTTTCATGGAGCAAAGACATTTGCGATCCGTGCATGCGAAGCTGACCC-ATCCCGAAC 143
Query 199 AGAGGCAGCGGACTACATCCTCGCAATCTG-CGACATTCTTCTCGCCGGAGAGACT-CGT 256
||| ||||| ||||| |||||||| ||| | ||||| ||| ||||||||||| ||| |
Sbjct 144 AGACGCAGCTGACTATATCCTCGCCATC-GCCGACACTCTCCTCGCCGGAGAAACTAC-A 201
Query 257 CTAGGTGATTCCAACTTGCCGGACTGGTACGCCGTTCTCCGACTCGGTCGTTTAGCACAA 316
| || |||||||| | || ||||||||||| || || ||| || | || || | |||
Sbjct 202 ATCGGAGATTCCAAAGTACCAGACTGGTACGCGGTACTTCGAATCAGCCGCCTAACCCAA 261
Query 317 AACCCTGAACACGTCGCGACTCAGTACCGTAGACTCGCTCTTCTCCTCAATCCTTCCGT- 375
| |||||||||||||||||||||||||||||||||| ||||||||||||| | | | |
Sbjct 262 AGCCCTGAACACGTCGCGACTCAGTACCGTAGACTCACTCTTCTCCTCAAAC-T-CAATA 319
Query 376 T-AATCGTCTCCCATTCGCCGATCGAGCTTTTAAAATCGTCTCCGATGCTTGGT-TCGTT 433
| |||||||| || |||||||||| ||| ||||| |||||||||||||||||| | ||
Sbjct 320 TCAATCGTCTTCCTTTCGCCGATCAAGCGCTTAAACTCGTCTCCGATGCTTGGTAT-GTC 378
Query 434 CTCTCTGATCCGTCCAAG-AAGTCA-TTCTACGACCGAGAATTGCAACTGAGTCAA-CTC 490
||||||||||| |||||| || ||| || ||||| ||||| ||||| ||||||||| ||
Sbjct 379 CTCTCTGATCC-TCCAAGGAAATCAATT-TACGATCGAGAGTTGCAGCTGAGTCAAACT- 435
Query 491 GGTCAATC 498
||||||||
Sbjct 436 GGTCAATC 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5