BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496645
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64370.1 | Symbols: BETA-UP, PYD3 | beta-ureidopropionase | ... 2082 0.0
> AT5G64370.1 | Symbols: BETA-UP, PYD3 | beta-ureidopropionase
| chr5:25739178-25741212 FORWARD LENGTH=1494
Length=1494
Score = 2082 bits (1127), Expect = 0.0
Identities = 1305/1390 (94%), Gaps = 16/1390 (1%)
Strand=Plus/Plus
Query 2 AATTGATCAAACCGATCGATCATTGTTGTCATAAAAGTCATCGCCATCTTGGTTTCGTGA 61
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 6 AATTGACCAAACCGATCGATCACTGTTGTCATAAAAGTCATCGCCATCTTGGTTTCGTGA 65
Query 62 TCGGAACCTGACTCGTGGAAAAATGGATAAGATCATCTCAGAAAACGGAGACAC-AGCTG 120
|| ||| |||||||| |||||||||| | || || |||||||||||||| || || ||
Sbjct 66 TC-GAAAAAGACTCGTGAAAAAATGGATCATATGATATCAGAAAACGGAGAAACAAG-TG 123
Query 121 CCGAGGGATCGATTTGCGGCTATGATTCGCTACATCAACTCTTATCAGCGAATCTCAAGC 180
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 124 CCGAAGGATCGATTTGCGGCTATGATTCGCTGCATCAACTCTTATCAGCGAATCTTAAGC 183
Query 181 CCGAGCTTTATCAGGAGGTAAACCGATTGCTCCTTGGACGTAACTGTGGGAGATCGCTTG 240
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 184 CCGAGCTCTATCAGGAGGTAAACCGGTTGCTCCTTGGACGTAACTGTGGGAGATCGCTTG 243
Query 241 AACAGATTGTTCTTCCGGAGTCTGC-AATATCCTTGTCTTCAAAACATGATTTTGATCTC 299
||||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 244 AACAGATTGTTCTGCCGGAGTCTGCTAA-AGCCTTGTCTTCAAAACATGATTTTGATCTC 302
Query 300 CAGGCTG-TGAGCTTTTCAGCTGATAAAGAGCAAATGAGAAATCCTCGAGTGGTTAGAGT 358
||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 303 CAGGCTGCT-AGCTTTTCAGCTGATAAAGAGCAAATGAGAAATCCTCGAGTGGTCAGAGT 361
Query 359 TGGTCTCATTCAAAACTCCATCGCTCTTCCGACCACTGCTCCTTTCTCGGACCAAACAAA 418
||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 362 TGGTCTCATTCAAAACTCCATTGCTCTTCCAACCACTGCTCCATTCTCGGACCAAACAAG 421
Query 419 AGGAATATTCGACAAGTTGAAGCCGATGATCGACGCTGCGGGGGTTGCTGGTGTTAACAT 478
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 422 AGGAATATTCGACAAGTTGAAGCCGATAATCGATGCTGCGGGTGTTGCTGGTGTTAACAT 481
Query 479 ACTGTGCTTGCAGGAAGCTTGGACCATGCCGTTTGCATTTTGCACGAGGGAGAGGAGATG 538
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 482 ACTGTGCTTGCAGGAAGCTTGGACCATGCCATTTGCATTTTGCACTAGGGAGAGGAGATG 541
Query 539 GTGTGAGTTTGCAGAGCCTGTTGATGGCGAATCCACAAAGTTTCTTCAAGAACTTGCTAA 598
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 542 GTGTGAGTTTGCAGAGCCTGTTGATGGCGAATCGACAAAGTTTCTTCAAGAACTCGCTAA 601
Query 599 AAAGTATAACATGGTGATTGTTAGTCCTATTCTTGAAAGAGATATTGATCACGGTGAAGT 658
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 602 AAAGTATAACATGGTGATTGTTAGTCCTATTCTCGAAAGAGATATTGATCACGGTGAAGT 661
Query 659 GCTTTGGAATACCGCTGTGATTATAGGGAATAATGGAAATATCATTGGCAAGCACCGAAA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 662 GCTTTGGAATACCGCTGTGATTATAGGGAATAATGGAAATATCATTGGCAAGCATCGAAA 721
Query 719 GAACCATATACCGAGGGTTGGAGATTTCAACGAGAGTACGTATTACATGGAAGGAGACAC 778
|||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 722 GAACCATATACCTAGGGTAGGAGATTTCAACGAGAGCACCTATTACATGGAAGGAGACAC 781
Query 779 AGGCCATCCTGTTTTTGAGACGGTGTTTGGGAAAATTGCGGTTAATATCTGTTATGGAAG 838
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 782 AGGCCATCCTGTGTTTGAGACGGTGTTTGGGAAAATTGCGGTTAATATATGTTATGGCAG 841
Query 839 ACACCATCCTCTAAATTGGTTAGCTTTTGGTCTAAATGGTGCAGAGATTGTCTTCAACCC 898
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ACACCATCCTCTGAATTGGTTAGCTTTTGGTCTAAATGGTGCAGAGATTGTCTTCAACCC 901
Query 899 TTCAGCAACTGTTGGTGGACTCAGTGAACCAATGTGGCCTATTGAGGCACGAAATGCCGC 958
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTCAGCAACTGTTGGTGAACTCAGTGAACCAATGTGGCCTATTGAGGCACGAAATGCCGC 961
Query 959 GATAGCAAACAGTTACTTCGTGGGATCCATTAACCGAGTTGGAACTGAAGTATTCCCTAA 1018
||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||
Sbjct 962 AATAGCAAACAGTTACTTTGTTGGATCCATTAACCGAGTTGGAACCGAAGTATTCCCCAA 1021
Query 1019 TCCTTTTACGTCAGGTGATGGAAAACCGCAACACAATGATTTCGGGCATTTCTATGGGTC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TCCTTTTACGTCAGGTGATGGAAAACCGCAACACAATGATTTCGGGCATTTCTATGGGTC 1081
Query 1079 AAGCCATTTCTCTGCACCGGATGCTTCTTGCACACTGTCTTTGTCCCGTTACAAAGATGG 1138
||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1082 AAGCCATTTTTCTGCACCAGATGCTTCTTGCACACCGTCTTTGTCCCGTTACAAAGATGG 1141
Query 1139 GTTATTGATCTCGGACATGGACCTCAATCTCTGTCGGCAATACAAGGACAAATGGGGATT 1198
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 1142 TTTATTGATCTCGGACATGGATCTCAATCTCTGCCGGCAATACAAGGACAAGTGGGGATT 1201
Query 1199 TAGAATGACTGCAAGATACGAAGTCTATGCCGATCTGTTGGCTAAGTACATAAAGCCAGA 1258
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1202 TAGAATGACTGCAAGATACGAAGTCTATGCCGATCTTTTGGCAAAGTACATAAAGCCAGA 1261
Query 1259 CTTCAAGCCTCAAGTCGTCTCTGATCCATTGCTCCACAAGAATTCTTCATAGGAAGAAAA 1318
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 1262 CTTCAAGCCTCAAGTCGTCTCTGACCCATTGCTCCACAAGAATTCTACATAAGAAGAAAA 1321
Query 1319 TTTC-CA--GT-AA-CTTGAATCTGTGAATCTTC-AA-A-TCAATGTTCAATCACTTGTG 1370
|||| | || || ||| || ||| || || | |||||||||||||| |||||
Sbjct 1322 TTTCACTCTGTGAATCTTCAAAGAA-GAAAAGTCCAATAATCAATGTTCAATCATTTGTG 1380
Query 1371 TAACTGTAAC 1380
||| ||||||
Sbjct 1381 TAAATGTAAC 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71636177715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5