BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496646
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64380.1 | Symbols: | Inositol monophosphatase family prote... 2025 0.0
> AT5G64380.1 | Symbols: | Inositol monophosphatase family protein
| chr5:25741249-25743198 FORWARD LENGTH=1482
Length=1482
Score = 2025 bits (1096), Expect = 0.0
Identities = 1259/1338 (94%), Gaps = 9/1338 (1%)
Strand=Plus/Plus
Query 1 GTCATCTTCTATTCGTTATCCGTTTTGAAGTGTACTCAGATGGGATTGAGTTTCGCAGAT 60
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 14 GTCATCTTCTATTCGTTATCCGTTTTGAAGCGTACTCGGATGGGATTGAGTTTCGCAGAT 73
Query 61 GCTTTAAA-TCCAGAAAAATAATGCAATCACTCACCTTAACTCGGTACCCAACTCCAATT 119
|||||||| || || |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 74 GCTTTAAATTCTAG-AAAATAATGCAATCTCTTACCTTAACTCGGTACCCAACTCCAATT 132
Query 120 TCCCCGCCAAGACTCAATCTTTACCCGCTAAGACAAATCGCAGGGTCTGTTCTCTCTGTT 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 133 TCCCCGCCAAGACTCAATCTTTACCCGCTAAGACAAATCGCAGCTTCTGTTCTCTCTGCT 192
Query 180 CCGACCACCGG---CAACCGTAGCGAGATGACGTCTCGTCGTGAGTGTGCTTCCTTTAAG 236
|||||| |||| |||||| |||| ||| ||||||| | | ||| |||||||||||
Sbjct 193 CCGACCGCCGGTATTAACCGTCGCGATATGGCGTCTCGCCATCAGTCAACTTCCTTTAAG 252
Query 237 TCCCTCGCCGTTGGTCAGACTTCGACCGGTGATGGTGATGATGGTTACTGTACTCTGATA 296
|||| |||||||||| || || |||||| |||| ||||||||||||||||||||| |||
Sbjct 253 CCCCTTGCCGTTGGTCGGAATTTGACCGGAGATGATGATGATGGTTACTGTACTCTTATA 312
Query 297 GACTTTGCAGGTAATGGAGGAGGAGAAGGGACAAAA-GTAGGAGATGATCTTGTGGTGTT 355
||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 313 GACTTTGCAGGTAGTGGAGGAGGAGAAGGGA-AAAATGTAGGAGAGGATCTTGTGGTGTT 371
Query 356 GCTTTACCACTTACAACATGCCTGCAAAAGAATCGCTTCTCTTGTCGCCTCTCCTTTCAA 415
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 372 GCTTTACCACTTACAACATGCTTGCAAAAGAATCGCTTCTCTTGTCGCCTCTCCTTTCAA 431
Query 416 TTCTTCACTCGGCAAGCTCTCTGTTAACTCCTCTAGTGGGTCAGATCGAGATGCCCCTAA 475
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 432 TTCTTCACTCGGAAAGCTCTCTGTTAACTCCTCTAGTGGGTCAGACCGAGATGCGCCTAA 491
Query 476 GCCGCTCGATATTGTCTCGAACGATATCGTCTTGTCCTCTCTTAGAAACTCGGGGAAAGT 535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 492 GCCGCTCGATATTGTCTCGAACGATATCGTCTTGTCCTCTCTTAGAAACTCAGGGAAAGT 551
Query 536 AGCAGTAATGGCTTCTGAAGAAAACGATATTCCAACTTGGATCAAAGATGATGGTCCTTA 595
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 552 AGCAGTAATGGCTTCTGAAGAAAACGATAGTCCAACTTGGATCAAAGATGATGGTCCTTA 611
Query 596 CGTTGTGGTTGTAGATCCTCTAGATGGATCACGGAACATCGATGCTTCGATACCCACAGG 655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 612 CGTTGTGGTTGTAGATCCTCTAGATGGATCACGGAACATCGATGCTTCGATTCCCACGGG 671
Query 656 AACTATATTCGGGATTTATAACCGCCTGGTTGAGCTTGATCATTTACCAGTTGAAGAGAA 715
||||||||| || ||||| || || || |||||||||||||||||||| |||||||||||
Sbjct 672 AACTATATTTGGAATTTACAATCGTCTCGTTGAGCTTGATCATTTACCTGTTGAAGAGAA 731
Query 716 AGCTGAGCTCAATTCTTTGCAGAGAGGCAACAGGCTTGTAGCTTCCGGTTATGTGCTCTA 775
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 732 AGCTGAGCTCAATTCTTTGCAGAGAGGCAGCAGGCTTGTAGCTTCCGGTTATGTGCTATA 791
Query 776 CTCTTCAGCCACTATCTTCTGTGTTACACTTGGCTCGGGAACACACGCCTTCACGCTAGA 835
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 792 CTCTTCAGCCACTATCTTCTGTGTTACACTTGGATCGGGAACACACGCCTTCACGCTAGA 851
Query 836 CCATTCCACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCTACTCGAGGG-C 894
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 852 CCATTCCACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCG-GGGAC 910
Query 895 AAATCTACTCAGTGAATGATGCGAGGTACTTCGATTGGCCAGAAGGTTTAAGGAAGTACA 954
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 911 AAATCTACTCAGTGAACGATGCGAGGTACTTTGATTGGCCAGAAGGTTTAAGGAAGTACA 970
Query 955 TTGACACAGTGAGACAAGGCAAAGGTCAAAACCCGAAAAAGTACTCGGCGCGTTACATTT 1014
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 971 TTGACACAGTGAGACAAGGCAAAGGTCAAAACCCGAAAAAATACTCTGCGCGTTATATTT 1030
Query 1015 GTTCTCTAGTAGCTGATCTTCACAGGACTCTCTTATACGGCGGAGTGGCTATGAATCCAA 1074
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1031 GTTCTCTAGTAGCTGATCTTCACAGGACTCTCTTATACGGTGGAGTGGCTATGAATCCAA 1090
Query 1075 GAGACCATCTTCGTTTAGTCTACGAAGGAAACCCTTTGGCTTTTCTCGTGGAACAAGCTG 1134
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1091 GAGACCATCTTCGTTTAGTCTATGAAGGTAACCCTTTGGCTTTTCTCGTGGAGCAAGCTG 1150
Query 1135 GTGGCAAATCCTCTGATGGAAAAAGAGGGATACTTTCGATACAACCCGTGAAGCTTCACC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 GTGGCAAATCCTCTGATGGAAAAAGAGGGATACTTTCGATACAACCCGTGAAGCTTCACC 1210
Query 1195 AGAGGTTGCCTCTGTTTCTTGGGAGCGTAGAGGATGTTACTGAGCTTGAAAGCTATGCAG 1254
| || ||||||||||||||||||||| ||||||||||| ||||||| || ||||||| ||
Sbjct 1211 AAAGATTGCCTCTGTTTCTTGGGAGCTTAGAGGATGTTGCTGAGCTAGAGAGCTATGGAG 1270
Query 1255 ATGTGCAGCAGACTGTGAATCCTGGCTATGAAGTTTAAACGATTCCTCTGTTTCATACTA 1314
||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||
Sbjct 1271 ATGTGCAGCAGACTGTGAACCCTGGCTATGAAGTTTAAACAACTCCTCTGTTTCATATTA 1330
Query 1315 TGTGTAAAAATAATAAAT 1332
| |||||||| |||||||
Sbjct 1331 TCTGTAAAAACAATAAAT 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5