BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496648

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64400.2 | Symbols:  | BEST Arabidopsis thaliana protein mat...   616    1e-175


> AT5G64400.2 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); 
Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; 
Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses 
- 0; Other Eukaryotes - 36 (source: NCBI BLink). | chr5:25748840-25750356 
FORWARD LENGTH=980
Length=980

 Score =  616 bits (333),  Expect = 1e-175
 Identities = 345/351 (98%), Gaps = 0/351 (0%)
 Strand=Plus/Plus

Query  47   TCTCTCTCTATCAAAATGGGTCGCCGTAGCTCAGGAGGAAGATCTGCTCCTCGCCCTCGT  106
            ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  68   TCTCTCTATATCAAAATGGGTCGCCGTAGCTCAGGAGGAAGATCTGCCCCTCGCCCTCGT  127

Query  107  CCTGCTGCTGCACGCAGCCCAGCTCCTCAACCTGTACACCGTGCACCTCCTCCAGCTCCA  166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  128  CCTGCTGCTGCACGCAGCCCAGCTCCTCAACCTGTACACCGTGCACCTCCTCCAGCTCCA  187

Query  167  GCTCAGGCCAGCGGTGGTGGTGGTGGCATGTTCTCAGGCATTGGTTCTACCATTGCTCAG  226
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  188  GCTCAGGCCAGCGGTGGTGGTGGTGGCATGTTCTCAGGCATTGGTTCAACCATTGCTCAG  247

Query  227  GGTATGGCTTTTGGTACTGGAAGTGCAGTTGCACACAGGGCTGTTGATTCTGTGATGGGT  286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  248  GGTATGGCTTTTGGTACTGGAAGTGCAGTTGCACACAGGGCTGTTGATTCTGTGATGGGT  307

Query  287  CCACGAACCATTCAACATGAAGCTGTTGAGGCTGCTTCTGCATCTGCAGCTCCTGCTGGA  346
            |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  308  CCACGAACCATTCAGCATGAGGCTGTTGAGGCTGCTTCTGCATCTGCAGCCCCTGCTGGA  367

Query  347  AGCGCCATGCTTTCTAGCACCTGTGACATTCATGCTAAGGCTTTCCAAGAT  397
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  368  AGCGCCATGCTTTCTAGCACCTGTGACATTCATGCTAAGGCTTTCCAAGAT  418


 Score =  185 bits (100),  Expect = 4e-46
 Identities = 102/103 (99%), Gaps = 0/103 (0%)
 Strand=Plus/Plus

Query  398  TGCATTGGCAGCTATGGAAGCGAGATTAGCAAATGTCAGTTCTACATGGACATGTTGTCC  457
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  708  TGCATCGGCAGCTATGGAAGCGAGATTAGCAAATGTCAGTTCTACATGGACATGTTGTCC  767

Query  458  GAGTGCAGGAAGAACTCTGGTTCCGTGATTGGTGCCTAGAGTT  500
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  768  GAGTGCAGGAAGAACTCTGGTTCCGTGATTGGTGCCTAGAGTT  810



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5