BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496650
Length=4184
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64420.1 | Symbols: | DNA polymerase V family | chr5:257563... 6348 0.0
> AT5G64420.1 | Symbols: | DNA polymerase V family | chr5:25756332-25761341
FORWARD LENGTH=4224
Length=4224
Score = 6348 bits (3437), Expect = 0.0
Identities = 3982/4237 (94%), Gaps = 70/4237 (2%)
Strand=Plus/Plus
Query 1 GACAGCGAAAAGCTTCACTAGTCGATTAGGG-tt-ttt-ttCTGAGCCCCAACTCCCAAA 57
||||| | ||||||||||||||||||||||| || ||| |||| ||||||| |||||||
Sbjct 5 GACAGAGGAAAGCTTCACTAGTCGATTAGGGTTTCTTTCTTCT-CGCCCCAATTCCCAAA 63
Query 58 TTCAAAATCGAAGCTTTTTTAATGGGCAGTAAGAAGAGAAGCAACGACGACTCGACGGAG 117
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 64 TTCAAAATCGAAGCTTTTTTAATGGGTAGTAAGAAGAGAAGCAACGACGACTCGACGGAG 123
Query 118 GTGGTGGAGAACAACAATCTCACCGATTCTTCAATTGTGAAGAATAAGAAATCTAAAACC 177
||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 124 TTGGTGGAGAACGACAACCTCCCCGATTCTTCAATTGTGAAGAAGAAGAAATCTAAAACT 183
Query 178 GAGAAGATGAATA------C------TGATTCTGATAcggcggcggcggcggc-g--gcT 222
||||||||||||| | ||||||||||||||||||||||||||| | | |
Sbjct 184 GAGAAGATGAATACCGTTGCTAATTATGATTCTGATACGGCGGCGGCGGCGGCGGAAGTT 243
Query 223 CCTGGTGTCACGAGCTCCGGTAAGGATATGGagaagaagaagaagagaaAAGCTTCTGAC 282
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 CCTGGTGTTGCGAGCTCCGGTAAGGATATGGAGAAGAAGAAGATGAGAAAAGCTTCTGAT 303
Query 283 AAAGAGAGGAGACGA-ACAGCTGCGCTGGAGAAAAATGATGGTGTAGGAGCTTCGCGGCC 341
||| ||||||||| | | |||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 304 AAACAGAGGAGACTAGA-AGCTGCTCTGAAGAAAAACAATGGTGTAGGAGCTTCGCGGCC 362
Query 342 TAAGCCTAGACCTGTGGTTGTTAATTCGAACTCCGATGAAGCCGATGACGAGTCTCTTCC 401
|||||||| |||||||| ||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 363 TAAGCCTATACCTGTGGCTGTAAATTCAAACTCCGATGAAGCCGACGACGAGTCTCTTCC 422
Query 402 CTCCGCAGCCG---CTTCTTCCTCGTTGCCTCTCAACTATTTTACAGATTTGGCTTCTTC 458
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 423 CTCCGCAGCCGCTTCTTCTTCCTCGTTGCCTCTGAACTATTTTACAGATTTGGCTTCTTC 482
Query 459 TGATGCTTCCGTTAGAGAAGCAGCTGCTGAGTCGTTGGT-TCTGAGGTTGCAAGAGATTC 517
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 483 TGATGCTTCCGTTAGAGAAGCAGCTGCTGAGTCGTTGGTAT-TGAGGTTGCAAGAGATTC 541
Query 518 AGAAGCAATATGAGATGTTACCTAATAAAGAATCTGTTGACGGTGGATTGATGCTTGAAG 577
|||||||||| || ||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 542 AGAAGCAATACGAAATGTTACCTGATAAAGAATCTGTTGATGGTGGTTTGATGCTTGAAG 601
Query 578 CTGAGAAAAACGATGGTTTGGATAACTGTGCTCCTCACT-TGAGATATGCTCTACGAAGG 636
||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct 602 CTGAGAAAAACGATGGTTTGGATAACTGTGCTCCTCA-TCTGAGATATGCTCTACGCAGG 660
Query 637 CTTATTCGTGGAGTCTCTTCTTCAAGAGAGTGCGCAAGACAAGGATTTGCCTTGGGGTTG 696
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 CTTATTCGTGGAGTCTCTTCTTCAAGAGAGTGCGCAAGACAAGGATTTGCTTTGGGGTTG 720
Query 697 ACATTACCTGTTAGCGTTATTTCTAGCATTAATGTGGAATCTTTGATGAACCTCATTGCT 756
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 721 ACATTACCTGTTAGCGTTATTTCTAGCATTAATGTGGAATCTTTGCTGAATCTCATTGCT 780
Query 757 GATTCTTTGTCTGTATCTTCATCCATGACTAGACAAGATATTAAGGAATGCTTATTGGGT 816
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 781 GATTCTTTGTCTGTATCTTCATCCATGACGGGACAAGATATAAAGGAATGCTTATTGGGT 840
Query 817 CGATTGTTTGCTTATGGTGCGCTTGCACGTTCTGGAAGACTGATTGAAGATTGGCAATCT 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGATTGTTTGCTTATGGTGCGCTTGCACGTTCTGGAAGACTGATTGAAGATTGGCAATCT 900
Query 877 GATAAAGACTCTCAGATAATCAAAGAATTTACCAATGCTCTTATTGGTCTTGCCGCAAAA 936
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 GATAAAGACTCTCCGATAATCAAAGAATTTACCAATGCTCTTATTGGTCTTGCTGCAAAA 960
Query 937 AAGCGTTACTTGCAGGAACCAGCTGTGCATGTTCTTCTAGACCTTGTTGACAAGTTACCT 996
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||
Sbjct 961 AAGCGTTACTTGCAGGAACCAGCTGTGCATATTCTTCTAGACTTTGTTGACAAGTTGCCT 1020
Query 997 ACTGAACCTGTTGTGACTCATGTTATGGAATCCCCAGAGCTTCATAAATTGTTTGAACAA 1056
|||||||||||||| ||||||||||||||| | ||||| ||| |||||| ||||||||||
Sbjct 1021 ACTGAACCTGTTGTTACTCATGTTATGGAAGCTCCAGAACTTTATAAATGGTTTGAACAA 1080
Query 1057 GCCACCGAGGTGGGAAACCCGGATGCTTTGCTCTTAGCGCTTAAACTCCATGAAAAGATT 1116
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 1081 GCCACCGAGGTGGGAAACCCAGATGCTTTGCTCTTAGCGCTGAAACTCCATGAAAAGGTT 1140
Query 1117 TTAGTCGATCATCCTGTATTTAGCAAGCTACTGCCAGTTCCTTTCAGTTCCGGGAAGttt 1176
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCAGTCGATCATCCTATATTTAGCAAGCTACTGCCAGTTCCTTTCAGTTCCGGGAAGTTT 1200
Query 1177 ttttCTGCTGATCATCTCTCTGCCATTAGTAATTGCTTGAAGGAATCTACTTTCTGCCAG 1236
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 TTTTCTGCTGATCATCTCACTGCCATTGGTAATTGCTTGAAGGAATCTACTTTCTGCCAG 1260
Query 1237 CCTCGTGTTCATAGCTTATGGTCTGTTATAGTCGATATGCTGTTACCGGAAGCAGTTGTT 1296
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCTCGTGTTCATAGCTTATGGCCTGTTATAGTCGATATGCTGTTACCGGAAGCAGTTGTT 1320
Query 1297 CAAAGTGAAGATGTCATATCTGTTTCAAGTTCCTCGAAAAAGCAAAAACGGAACCGCAAG 1356
||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1321 CAAAGCGAAGATGTCGTATCTGTTTCAAGTTCCTCGAAAAAGCAAAAACGTAACCGGAAG 1380
Query 1357 TCCAATCCCA-TTGAAGAAGAAGCCACAAATAACATCAGGAATTTCTGCCAAGTTATTAT 1415
|| ||| ||| |||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 1381 TCTAAT-CCAGTTGAAGAAGAAGCCACAAATAACATCAGAAATTTCTGCGAAGTTTTTAT 1439
Query 1416 GGAAGGAGCA-CTGCTTTCTTCATCTCATGATCGCAAGCATTTGGCATTTGATATTCTGC 1474
|||||||| | || ||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 1440 GGAAGGAG-ACCTACTTTCTTCAACTCATGTTCGCAAGCATTTGGCATTTGATATCCTGC 1498
Query 1475 ATCTTCTTCTTCCAAAGCTTCCGGCAAGTTTTGTCCAACATGTATTATCGCTCCAATTTG 1534
||||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||
Sbjct 1499 TTCTTCTTCTTCCAAAGCTTCCTGCAAGTTTTATCCAACATGTATTGTCGCTCAAATTTG 1558
Query 1535 TTCAGTGCCTCATGGATATACTCTCCACAAAGGACTCTTGGTTGCATAAAGTTGCAACCC 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1559 TTCAGTGCCTCATGGATATACTCTCCACAAAGGACTCTTGGTTGCATAAAGTTGCCACCC 1618
Query 1595 ATTTTCTTGCCGAGTTAATGGATTGGGTGAAAGACGACGATACCAAGAGGGTGGCCGTTA 1654
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1619 ATTTTCTTGTCGAGTTAATGGATTGGGTGAAAGATGACGATACCAAGAGGGTGGCCGTTA 1678
Query 1655 CAATGGCTCTCCAGAAACATAGCGAAGGAAAATTTGATAATATTACGCATACAAAAACTG 1714
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1679 CAATGGCTCTCCAGAAACACAGCGAAGGAAAATTTGATAATATTACGCGGACAAAAACTG 1738
Query 1715 TTAAAGATCTAGCTGCAGAGTTTGAAACTGAAGATGGTTGCACACTTTATCTCCAGAACT 1774
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TTAAAGTTCTAGCTGCAGAGCTTGAAACTGAAGATGGTTGCACACTTTATCTCCAGAACT 1798
Query 1775 TGATGAATATGTTTGTGGATGAACAGCATGTTCCTGAGGAACCTTCAAATATGAAATGGT 1834
|||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1799 TGATGAATTTGTTTGTGGATGAACAGCATGTTCCTGAAGAATCTTCAAATATGAAATGGT 1858
Query 1835 CCCTAGAACCTTGCTCTTTGAATTCAGATCAGAGTCAAACTACAGATGATAATTCTGAC- 1893
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1859 CCCTAGAACCTTGCTCTTTGAATTCAGATCAGAGTCAAACAACGGATGATAATTCTGACA 1918
Query 1894 ATAGGTTCAAACGAGGAGAAGGATTCAGTTGGAACAACCGGAAACTCGGATGTTCTAAAA 1953
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1919 AT-GGTTCAAATGAGGAGAAGGATTCAGTTGGAACAACCGGAAACTCGGATGTTCTGAAA 1977
Query 1954 AGCTGGGTCATTGAATCTCTCCCTGGCATCTTAAAACATGCTAAATTGTCCCCCGAGGCG 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1978 AGCTGGGTCATTGAATCTCTCCCTGGCATCTTAAAACATGCTAAATTGTCCCCTGAGGCG 2037
Query 2014 AAACTGCGAGTTCAAAAGCAGATCCTGAAATTTCTCGCTGTACAAGGTCTCTTTCTGGCT 2073
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AAACTGCGACTTCAGAAGCAGATCCTGAAATTTCTCGCTGTACAAGGTCTCTTTCTGGCT 2097
Query 2074 TCTCTGGGCACTGAAGTTACATCATTTGAGTTGCAGGAGAAATTTAAGTGGCCAAAGACA 2133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 TCTCTGGGCACTGAAGTTACATCATTTGAGTTGCAGGAGAAATTTAAGTGGCCAAAGACA 2157
Query 2134 GCTACTCCCGCTGCCCTTTGCAAAATGTGCATCGAACAGCTTCAGCTATTGCTGTCAAAT 2193
|||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 2158 GCTACTCCTGCTGCTCTTTGCCAAATGTGCATCGAACAGCTTCAGCTGTTGCTGTCAAAT 2217
Query 2194 TCTCAGAAGATTGAGAATCCACTATCTAAAGGAAATGGCATGGAGCAGCCTGATGATCCT 2253
||||||||||||||||| ||||||||||||||||||| | |||| ||||| |||||||||
Sbjct 2218 TCTCAGAAGATTGAGAAACCACTATCTAAAGGAAATGCCCTGGAACAGCCCGATGATCCT 2277
Query 2254 GTTTCGTACTTTATGAAATTCCTTAGCACGTTGCAGAATATTCCCTCAGTTTCCCTCTTC 2313
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 GTTTCATACTTTATGAAATTCCTTAGCACGTTGCAGAATATTCCCTCAGTTTCCCTCTTC 2337
Query 2314 CGTTCCTTGAATGAAGCAGATGAGAAGGCATTCAAAAAATTACAAGAAACAGAGAGTAAA 2373
||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||
Sbjct 2338 CGTTCCTTGAATGAAGCAGATGAAAAGGCTTTCAAAGAATTACAAGAAACAGAAAGTAAA 2397
Query 2374 CTTTCAAAGGAGGAAAGAAATTGTGGACTAGCTACTGATCCAAATAAATTTCATGCATTG 2433
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2398 CTTTTAAAGGAGGAAAGAAATTGTGGACTATCTACTGATCCAAATAAATTTCATGCATTG 2457
Query 2434 AGGCACTTAGTTGTTCAGCTGTTGCTTCAAATACTCCTCCATCCGGGAGAGTTCTCAGAA 2493
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2458 AGGCACTTAGTTGTTCAGCTGTTGCTTCAAATACTCCTCCATCCGGGAGAATTCTCAGAA 2517
Query 2494 GCTGCAACTGAGCTTTCAGTATGCTGTGACAAAGCTTTCAGTTCTCTTGATCTTCTAAAA 2553
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2518 GCTGCTACTGAACTTTCAGTATGCTGTGACAAAGCTTTCAGTTCTCTTGATCTTCTGAAA 2577
Query 2554 AGTGATGGGGAAGGTGAGGCAGACGATGAAGAAGAACCAGCAGTCATGGATGTCCTCGTG 2613
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2578 AGTGATGGGCAAGGTGAGGCAGACGATGAAGAAGAACCAGCAGTCATGGATGTCCTCGTG 2637
Query 2614 GACACTTTACTTTCTCTCTTGCCGCATTCTTCAGCTCCAATGCGATCTTCTATTGAGCAG 2673
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2638 GACACATTACTTTCTCTCTTGCCGCATTCTTCAGCTCCAATGCGGTCTTCTATTGAGCAG 2697
Query 2674 GTTTTCAAGTACTTTTGTCAAGATGTCACCAACGATGGACTGCTGAGAATGTTGCGGGTG 2733
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2698 GTTTTTAAGTACTTTTGTCAAGATGTCACCAACGATGGACTGCTGAGAATGTTGCGGGTG 2757
Query 2734 ATCAAGAAAGATCTAAAACCGGCTAGACATCAGGAGGACCAAGACTCTGAGGATCGtgat 2793
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |
Sbjct 2758 ATCAAGAAAGATCTAAAACCGTCTAGACATCAGGAGGACCAAGACTCTGACGATC-T--T 2814
Query 2794 gatgatgatgatgaAGATTGTCTTGCTATTGAAGAGGAAGAAGAAGAAAACGAGGAAATG 2853
||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 2815 GATGATGATGAAGAAGATTGTCTTGCTATTGAAGATGCAGAAGAAGAAAACGAGGAGATG 2874
Query 2854 GGCGAGACTGGTGAGAGCGATGAGCAGACTGATGATTCTGAAACAGTAACCGGCGTTGTC 2913
|| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 2875 GGTGAAACTGGTGAGAGCGATGAGCAGACTGATGATTCCGAAGCAGTAACCGGCGTTGTC 2934
Query 2914 CCTATGGCAGTTGACAGAGAAGTTCCTGAAAATTCtgatgattatgatgatgatgatgga 2973
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 2935 CCTATGGCAGTTGACAGAGAAGTTCCTGAAAATTCCGATGATTCTGATGATGATGATGGA 2994
Query 2974 atggatgatgatgCAATGTTCCGCATGGACACTTACCTTGCCCAGATATTCAAGGAGAAG 3033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2995 ATGGATGATGATGCAATGTTCCGCATGGACACTTACCTTGCCCAGATATTCAAGGAGAAG 3054
Query 3034 AGGAATCAAGCTGGCGACGAAAGTGCTCAGTCCCAGCTTGTTTTGTTTAAACTCCGTGTC 3093
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3055 AGGAATCAAGCTGGCGGCGAAACTGCTCAGTCCCAGCTTGTTTTGTTTAAACTCCGTGTC 3114
Query 3094 CTCTCCCTTCTTGAAATCTACCTCCATGAAAATCCAGATAAGCCTCAAGTTATGACAGTG 3153
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 3115 CTCTCCCTTCTTGAAATCTACCTCCATGAAAATTCAGATAAGCCACAAGTTATGACAGTG 3174
Query 3154 TACTTAAACTTAGCTCAGGCAATTCTGAACCCAAGCACTGCAGAAAGTAGTCTGCCGCTT 3213
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3175 TACTTAAACTTAGTTCAGGCAATGCTGAACCCAAGCACTGCAGAAAGTAGTCTGCCGCTT 3234
Query 3214 TTACAACGTATATGGGGTATCATTCAGAAGAAGATCTTCAAGGCTAAAGAGTATCCCAAG 3273
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 3235 TTACAACGTATATGGGGCATCATTCAGAAGAAGATCTTCAAGGCTAAAGAGTTTCCCAAG 3294
Query 3274 GATGAATCAATGGAATTTTCTGCACTTGCTTCTTTGTTGGAGAAGAATCTTAAACTGGCT 3333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3295 GATGAATCAATGGAATTTTCTGCACTTGCTTCTTTGTTGGAGAAGAATCTTAAACTGGCT 3354
Query 3334 GCGAAACCATTCAAGAGTAAGAAGTCAGGAGTTGACCCTTCCAAGAAGAAGCAGTCAGCT 3393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3355 GCGAAACCATTCAAGAGTAAGAAGTCAGGAGTTGACCCTTCCAAGAAGAAGCAGTCAGCT 3414
Query 3394 GCGTGGAACCGATACAAGATAATCACTAACCTTGGCCAGAACTCAACTTACTGGGTTATG 3453
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 3415 GCGTGGAACCGATACAAGATGATCACCCACCTTGGCCAGAACTCAACTTACTGGGTTATG 3474
Query 3454 AAGATAATTGACTCGAGAAATTTTTCAGAAACTGAATTGGAGAAGATCTTGGATATGTTT 3513
|||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 3475 AAGATAATTGACTCGAGAAAATTCTCAGAAACTGAATTGGAGAAGATCTTGGATGTGTTT 3534
Query 3514 CGGAGTGCCGTTGTGGGGTACTTTGATACCAGGAAATCTCAGATGAAGATAGAGTTTCTT 3573
|||||||| ||| ||||||||||||| |||||| |||||| |||||||||| ||||||
Sbjct 3535 CGGAGTGCTGTTACCGGGTACTTTGATAGCAGGAAGTCTCAGTTGAAGATAGATTTTCTT 3594
Query 3574 GAGGAAGTGTTTAGAAGGAGACCATGGATTGGACACCAACTGTTTGGTTTCCTTCTGGAG 3633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3595 GAGGAAGTGTTTAGAAGGAGACCATGGATTGGACACCAACTGTTTGGTTTCCTTCTGGAG 3654
Query 3634 AG-AAGTGGGAATGCAAAGGTTGAGTTCCGTAGACTGGAAGCACTTGATTTGATCACTGA 3692
| ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 3655 -GCAAGTGTGAATGCAAATGTTGAGTTCCGTAGACTGGAAGCTCTTGATTTGATCACTGA 3713
Query 3693 AACTCTGAGATCGTTGGTTCCTATAAACGAAAACACCCAAGAAGATTCGaaaaaaaCAAT 3752
|||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct 3714 AACTCTGAGATCGTTGATTCCTATAAACGAAAACACCCAAGCAGATTCGAGAAAAACAAT 3773
Query 3753 GAAGACCCATCTGAAGAAACTGATTCATTTGATTAAAGAACTAGTTGCAAATATGCCTGA 3812
|| ||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 3774 GACGACCCATCTGAAGGAACTGATTCTTTTGATTAAAGAACTAGTTGGAAACATGCCTGA 3833
Query 3813 GGCTAAAGTAAGGCGAGCTCAGGTGCGTAAGTTCTGTGGCAGGATCTTTCAGATGGTCTC 3872
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3834 GGCTAAAGTAAGGCGAGCTCAGGTGCGTAAATTCTGTGGCAGGATCTTTCAGATGGTCTC 3893
Query 3873 TTCGTTGAAACTCACCAACTCTCTCCTCAAGGGTTTGGGACCAGATGGTC-AATCAGCAT 3931
|||||||||||||||||| ||| |||||||||| ||||||| |||||||| || ||||||
Sbjct 3894 TTCGTTGAAACTCACCAAATCTTTCCTCAAGGGGTTGGGACAAGATGGTCGAA-CAGCAT 3952
Query 3932 GTGAATCTGCACTT-GGTTATCTGTTCTTGAATCTCAAGAATACGGAGCATTAACGCA-A 3989
||||| |||| || ||| |||| ||||||||||| |||||||| ||||||||||||| |
Sbjct 3953 GTGAAGATGCA-TTCGGTGATCTCTTCTTGAATCTGAAGAATACAGAGCATTAACGCAGA 4011
Query 3990 GCTACTCCAA-GTATCATCAC-CAT--A-C--GCTGA-----tc-t-tttttctttt-t- 4033
||||||||| |||||| || | | | | | ||| || | ||||| |||| |
Sbjct 4012 -CTACTCCAAAGTATCACCATACGTTGATCTTGGTGAAACCCTCGTCTTTTTTTTTTGTT 4070
Query 4034 ---cttgttttatctttctATGAAGAAAA-CTTGCAGGATCTGAATCACACCAGTTTGAA 4089
||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 4071 TTTCTTGTGTTATCTTTCTATGAAGAAAAACTCGCAGGATCTGAATCACA--AGTTTGAA 4128
Query 4090 TAGGATTT-TCCCTATTCATGGATTCCAAAAGATATTACATTCTCACTT-TGTCCTAAAG 4147
|||||||| ||| ||||||| |||||||||||||| ||||||||||||| ||||| ||||
Sbjct 4129 TAGGATTTCTCC-TATTCATTGATTCCAAAAGATACTACATTCTCACTTATGTCCCAAAG 4187
Query 4148 AGATGATTTGTTTTGATAATTCATCAATTTTGTTTTC 4184
|||||||||||| ||||||||||||||||||||||||
Sbjct 4188 AGATGATTTGTTATGATAATTCATCAATTTTGTTTTC 4224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 208543982051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5