BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496659
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64480.1 | Symbols: | unknown protein; Has 35333 Blast hits... 835 0.0
> AT5G64480.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25778169-25778922
FORWARD LENGTH=754
Length=754
Score = 835 bits (452), Expect = 0.0
Identities = 550/595 (92%), Gaps = 15/595 (3%)
Strand=Plus/Plus
Query 1 AGAGATGTCGGTAAGATTACTTCATCTTCTTCCCCAAAACAATTCCTTTTCTCGGAATCT 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30 AGAGATGTCGGTGAGATTACTTCATCTTCTTCCCCAAAACAATTCCTTTTCTCGGAATCT 89
Query 61 CAAATTTCACCATCTGTTGACCCGACCCGTCACCCGAATTCAGTGCATAAAGAGAGACGA 120
|||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 90 CAAATTTCACCATCTGTTGACCCGACCCGTAACCCGAATCCAGTGCATAAGGAGAGACGA 149
Query 121 CGAAGACGATGACATCATCAGA-AACATGAGGATTAGGAAGCCCAAGAAGAAGAAGAAGA 179
||||||||||||||||||| | || ||||||||||||| ||| |||| |||||||||||
Sbjct 150 GGAAGACGATGACATCATCA-ACAAGATGAGGATTAGGAGGCCGAAGAGGAAGAAGAAGA 208
Query 180 TTATGACCGATTCGGAGCTGGCGAAAGATTTGGCTAGAGAAATCGGGAAAGCGAACACAG 239
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 209 TTATGACCGATTCGGAGCTAGCGACAGATTTGGCTAGAGAAATCGGGAAAGCGAACACAG 268
Query 240 TCGCGGAACAGAGACGAGAAGCGATGAAGAAGAGCGGTGAGATTCTATGGGGAGAGTTTT 299
||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 269 TCGCGGAGCAGAGAAGAGAAGCGATGAAGAAGAGCGGTGAGATTCTGTGGGCAGAGTTTT 328
Query 300 GTAGGCATATGGAATTGAAAGAAGATGAGATGAAGATTAAATGGAGCAAGATTGGAGAAG 359
||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 329 GTAGGCATATGGATTTGAAAGAAGATGAGATGAAGATAAAATGGAACAAGATTGGAGAAG 388
Query 360 AAGAGAAATTGGTTCTGGTTAGAAAGTTTGTGGATGAATGGGCTGGAGATTTTCAGCCTT 419
||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||
Sbjct 389 AAGAGAAATTGGTTCTGGTTAGAGAGTTTGTTGATGAATGGGCTGGTGATTTTCAACCTT 448
Query 420 TATCTGTTAGATCTGTGAAAGAAATGGTTGAACAAGAGTGTTTAGATTCTT-CTA----- 473
||||| ||| |||||| |||||||||||||| |||||||||||||||||| | |
Sbjct 449 TATCTATTACATCTGTTAAAGAAATGGTTGACCAAGAGTGTTTAGATTCTGACAAAACAA 508
Query 474 TGGAATCTTCTTCTTCT------ATGTCTTCGTTTTCTGGATTGTTTCCTGGATTGAAGA 527
| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 509 TCGAATCTTCTTCTTCTTCGTCTATGTCTTCGTTTTCTGGCTTGTTTCCTGGATTGAAGA 568
Query 528 GAATCATTGGGTTTGAGTAGAAAGAATCTCCAATTTTCTTTTATAATCATTGCAA 582
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 569 GAATCATTGGGTTTGAGTAGAAAGAATCTCCAATTTTCTTTTATAA-CATTGCAA 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5