BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496665
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64530.1 | Symbols: ANAC104, XND1 | xylem NAC domain 1 | chr... 1177 0.0
> AT5G64530.1 | Symbols: ANAC104, XND1 | xylem NAC domain 1 | chr5:25795233-25796938
FORWARD LENGTH=930
Length=930
Score = 1177 bits (637), Expect = 0.0
Identities = 691/716 (97%), Gaps = 8/716 (1%)
Strand=Plus/Plus
Query 1 ACCTCAATCTCTTTCACACACTTCCTCTGGCTCCACATCA-TCCTCTCTATATAATCTTC 59
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ACCTCAATCTCTTTCACACACTTCCTCTGGCTCCACATCATTCCTCTCTATATAATCTTC 60
Query 60 TTCT----ACACATTCACACGCAACCACATATGTACATGTGAAGTAGTGAGATCAATATC 115
|||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 61 TTCTACACACACACACACACGCAACCATATACGTACATGTGAAGTAGTGAGATCAATATC 120
Query 116 GTTATCAATGAATCTACCACCGGGATTTAGGTTTTTTCCGACCGACGAAGAGCTCGTCGT 175
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GTTAGCAATGAATCTACCACCGGGATTTAGGTTTTTTCCGACCGATGAAGAGCTCGTCGT 180
Query 176 TCACTTTCTCCACCGGAAAGCTTCCCTCTTGCCTTGTCACCCTGACGTCATTCCCGACCT 235
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 181 TCACTTCCTCCACCGGAAAGCTTCCCTCTTGCCTTGTCACCCTGATGTCATCCCCGACCT 240
Query 236 CGATCTTTACCATTACGATCCTTGGGACCTTCCAGGGAAAGCTTTGGGAGAAGGGAGGCA 295
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TGATCTTTACCATTACGATCCTTGGGACCTTCCCGGGAAAGCTTTGGGAGAAGGGAGGCA 300
Query 296 ATGGTACTTCTATAGTAGAAAGACACAAGAGAGAGTGACAAGCAATGGGTATTGGGGATC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGTACTTCTATAGTAGAAAGACACAAGAGAGAGTGACAAGCAATGGGTATTGGGGATC 360
Query 356 AATGGGAATGGACGAGCCAATCTACACAAGCTCCACACACAAGAAAGTGGGCATCAAAAA 415
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 AATGGGAATGGACGAGCCAATCTACACAAGCTCCACACACAAGAAAGTGGGAATCAAAAA 420
Query 416 GTATCTAACTTTCTATCTCGGAGATTCTCAGACTAACTGGATCATGCAAGAATATTCCCT 475
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 GTATCTAACTTTCTATCTCGGAGATTCTCAGACTAATTGGATCATGCAAGAATATTCCCT 480
Query 476 CCCAGATTCCTCTTCTTCATCTAGTCGATCTTCTAAGAGATCAAACCGTGCTGCTTCTAG 535
||| |||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 481 CCCGGATTCCTCTTCTTCATCTAGTCGATCTTCTAAGAGATCAAGCCGTGCT--T-CTAG 537
Query 536 TTCTAGTCACAAACCCGATTATAGCAAGTGGGTGATATGCAGAGTGTATGAGCAAAATTG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCTAGTCACAAACCCGATTATAGCAAGTGGGTGATATGCAGAGTGTATGAGCAAAATTG 597
Query 596 CAGTGAGGAAGAAGACGATGATGGGACAGAACTCTCATGCTTGGATGAAGTGTTTTTGTC 655
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 598 CAGTGAGGAGGAAGACGATGATGGGACAGAACTCTCATGTTTGGATGAAGTGTTTTTGTC 657
Query 656 TTTAGATGATCTTGACGAAGTAAGCTTACCGTAATAAAGACAGAAGCACCCAAGaa 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTTAGATGATCTTGACGAAGTAAGCTTACCGTAATAAAGACAGAAGCACCCAAGAA 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5