BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496668
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64560.1 | Symbols: MGT9, MRS2-2, ATMGT9 | magnesium transpo... 2457 0.0
> AT5G64560.1 | Symbols: MGT9, MRS2-2, ATMGT9 | magnesium transporter
9 | chr5:25806769-25809641 REVERSE LENGTH=1607
Length=1607
Score = 2457 bits (1330), Expect = 0.0
Identities = 1513/1598 (95%), Gaps = 25/1598 (2%)
Strand=Plus/Plus
Query 1 TTTCCGAAAATCTTTTTAATGAAAAAAGAGCAGTCAGGACGAGAATTCGCTTTCCTGAAT 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 3 TTTCCGAAAATCTTTTTAATGAAAAAAGAGCAGACAGGACGAGAATTCGCTTTTCTGAAT 62
Query 61 CCATTAGAGTGTTGTTATCTCCGTCGAAATCGCATGAACACTTGAGCTCAAAAAGACGGC 120
|| ||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 63 CCTTTAGAGTATTGTTTTCTCCGTCGAATTCGCATGAACACTTGAGCTCAACAAGACGGC 122
Query 121 GTGGAAGTGGACGGTGAGGTA--ATTTTTT-G-TTGGGAAAGACATGGCGCAAAACGGGT 176
||||||||||||||||||||| |||||| | || |||||||||||||||||||||||
Sbjct 123 GTGGAAGTGGACGGTGAGGTAGTTTTTTTTAGTTTTTGAAAGACATGGCGCAAAACGGGT 182
Query 177 A-TGTGGTTCCGGCGGATCCTTCGGCGGTAGTGACGGTGAAGAAGAAAACGCCACAAGCG 235
| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 183 ACT-TGGTTCCAGCGGATCCTTCGGCGGTTGTGACGGTGAAGAAGAAAACGCCACAAGCG 241
Query 236 TCGAAGAATTGGGCTATTATTGACGCGACGGGACAGAGTGAGACGCTCGATGTCGATAAG 295
|| | |||||| |||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 242 TC---G---TGGGCTCTTATTGACGCGACGGGACAGAGTGAGCCACTCGATGTTGATAAG 295
Query 296 TATGCTATCATGCACCGTGTCCAGATCCACGCTCGCGATCTTCGGATTCTCGACCCCAAT 355
|||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 296 TATGAGATCATGCACCGTGTCCAGATCCACGCTCGCGATCTCCGGATTCTAGACCCCAAT 355
Query 356 TTATCTTACCCTTCCACTATTCTTGGCCGAGAGAGAGCCATTGTGCTCAATTTGGAGCAT 415
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 356 TTATCTTACCCTTCCACTATTCTTGGCCGAGAGAGAGCCATTGTTCTCAATTTGGAGCAT 415
Query 416 ATCAAGGCGATTATCACTTCCGAAGAGGTTTTGCTTCGGGATCCGTCTGATGAAAATGTT 475
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATCAAGGCTATTATCACTTCCGAAGAGGTTTTGCTTCGGGATCCGTCTGATGAAAATGTT 475
Query 476 ATTCCAGTTGTGGAGGAGCTTCGAAGACGCTTACCCGTTGGAAATGCAGCACACCA---T 532
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |
Sbjct 476 ATTCCAGTTGTGGAGGAGCTTCGAAGACGCTTACCTGTTGGAAATGCATCACACAATGGT 535
Query 533 GGTCAAGGAGACGGGAAAGAGATCTCAGGTGCTCAAAACGATGGTGATACTGGTGATGAA 592
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 536 GGTCAAGGAGACGGGAAAGAGATCGCAGGTGCTCAAAACGACGGTGATACTGGTGACGAA 595
Query 593 GATGAATCCCCATTCGAATTTCGGGCGCTGGAAGTAGCTTTGGAAGCACTCTGTAGCTTC 652
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 596 GATGAATCCCCATTTGAATTTCGGGCGCTGGAAGTAGCTTTGGAAGCAATCTGTAGCTTC 655
Query 653 TTAGCTGCAAGGACAGCAGAATTAGAAACAGCTGCTTATCCTGCTTTGGATGAGCTTACC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTAGCTGCAAGGACAGCAGAATTAGAAACAGCTGCTTATCCTGCTTTGGATGAGCTTACC 715
Query 713 TCAAAGATTAGTAGCCGTAATTTGGATAGAGTTCGAAAATTGAAGAGTGCCATGACTCGG 772
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 716 TCAAAGATTAGTAGCCGTAATTTGGATAGAGTTCGGAAATTGAAGAGTGCCATGACTCGG 775
Query 773 TTGACAGCTCGGGTTCAAAAGGTAAGAGATGAACTCGAACAGTTGCTGGATGATGACGAT 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTGACAGCTCGGGTTCAAAAGGTAAGAGATGAACTCGAACAGTTGCTGGATGATGACGAT 835
Query 833 GATATGGCGGATCTTTACCTTTCAAGGAAACTTTCTAGTGCTTCCTCACCGATTAGTAGT 892
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 GATATGGCAGATCTTTACCTTTCAAGGAAACTTTCAAGTGCTTCCTCACCGATTAGTAGT 895
Query 893 GTTGGTGAACCAAATTGGTATGCTACTTCCCCAACAATAGGTTCTAAGATTTCAAGAGCA 952
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 896 ATTGGTGAACCAAATTGGTATACTACTTCCCCAACAATAGGCTCTAAGATTTCAAGAGCA 955
Query 953 AGTAGAGCGAGTTTAGCCACAGTTCGTGGGGATGAAAATGATGTTGAAGAACTTGAAATG 1012
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 956 AGTAGAGCGAGTTTAGCCACAGTTCATGGGGATGAGAATGATGTTGAAGAACTTGAAATG 1015
Query 1013 TTGCTCGAGGCATACTTCATGCAGATCGACAGCACTTTGAACAGATTGACAACACTACGT 1072
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1016 TTACTCGAGGCATACTTCATGCAGATCGACAGCACTTTGAACAGATTAACAACACTACGT 1075
Query 1073 GAGTACATTGATGACACAGAGGACTACATTAACATCCAGCTTGACAATCATCGGAATCAG 1132
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAGTATATTGATGACACAGAGGACTACATTAACATCCAGCTTGACAATCATCGGAATCAG 1135
Query 1133 CTTATTCAGTTGGAGCTTGTGTTAAGTTCTGGAACCGTTTGCTTATCAATGTACTCTCTT 1192
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1136 CTTATTCAGTTGGAGCTAGTGTTAAGTTCTGGAACAGTTTGCTTATCGATGTACTCTCTT 1195
Query 1193 GTCGCTGGAATTTTTGGGATGAACATTCCATACACATGGAACGACAATCATGGATACATG 1252
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1196 GTCGCTGGAATTTTCGGGATGAACATTCCATACACATGGAACGACGGTCATGGATACATG 1255
Query 1253 TTCAAATATGTCGTGAGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATG 1312
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTCAAATACGTGGTGGGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATG 1315
Query 1313 TCGTACGCTCGGTACAAAGGACTTGTGGGATCTTGATGGCTGAATTTGGGT-AGAGGGAG 1371
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1316 TCGTACGCTAGGTACAAAGGACTTGTGGGATCTTGATGGCTGAATTTGGGTTAGATGGAG 1375
Query 1372 AGATTGTGAAGGGGGCAT-GGGCAGATTCTTGTTTTCGATTATTGTACTTGTGGTCGTTC 1430
|||||||||||||| ||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 1376 AGATTGTGAAGGGG-CATTGGGCAGAT-CTTGTTTTCGATTATTATACTTGTGGTCGTTC 1433
Query 1431 TGAGTTTTGAACGGGCTTCACAATCT-TTTTACTTGTCGCATCATAAAATT-AATCAAAC 1488
||||||||||||| |||||||||| | ||||| |||||||||||||||||| ||||||||
Sbjct 1434 TGAGTTTTGAACGAGCTTCACAAT-TATTTTAGTTGTCGCATCATAAAATTTAATCAAAC 1492
Query 1489 ATATCGAAAAGAGCAGAAGCATTGTTGTGACTTGTAATTGCAAAGATAAGCTCTACCATC 1548
|||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1493 ATATTGAAAAAAGCAGAAGCATTGT-G--ACTTGTAATTGCAAAGATAAGCTCTACCATC 1549
Query 1549 GAATCCTTACAATTAGAGCATATAAATCATATTTAGGA 1586
|| ||||||||||||||||||| |||||| ||||||||
Sbjct 1550 GATTCCTTACAATTAGAGCATAGAAATCAAATTTAGGA 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78312850200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5