BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496671
Length=2743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64580.1 | Symbols: | AAA-type ATPase family protein | chr5... 4449 0.0
> AT5G64580.1 | Symbols: | AAA-type ATPase family protein | chr5:25817092-25821530
REVERSE LENGTH=2823
Length=2823
Score = 4449 bits (2409), Expect = 0.0
Identities = 2568/2647 (97%), Gaps = 2/2647 (0%)
Strand=Plus/Plus
Query 2 CGAGGGGAAATTTTTCTCAGCTCTAATCTGATGATTGAACAATGACGTTTTATATCTCGA 61
|||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||
Sbjct 25 CGAGGGGAAATTTTTCCCAGCTCTAATCTAATGACTGAACAATGACGTTTTATATCTCGA 84
Query 62 GTTCGTTAACTCTAACCCATTTCTCGAAACCCTTAAACCCTTCTAATACCCTCTTCCCCA 121
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 GCTCGTTAACTCCAACCCATTTCTCGAAACCCTTAAACCCTTCTAATACCCTCTTCCCCA 144
Query 122 TTCAATTTCGAGGTTCTCTGTCTAGTTTCGTTCGTCGTAGAAAACCAACGGAAGCTAAAT 181
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 145 GTCAATTTCGAGGTTCTCTGTCTAGTTTCGTCCGTCGAAGAAAACCAACGGAAGCTAAAT 204
Query 182 TAAGCTCCAAATTCAATATTTTTCCTTCACGAAGAAATGGTCTGATTACTTGTTGCAGTA 241
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 205 TAAGCTCCAAATTCAATCTTTTTCCTTCACGAAGAAATGGTTTGATTACTTGTTGCAGTA 264
Query 242 CATCGAGTTTTGAGTCTACTGAGTCTTCAGTTCCACAGGAAGAAGATGCTGAGTCCAATC 301
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 265 CATCGAGCTTTGAGTCTACTGAGTCTTCAGTTTCACAGGAAGAAGATGCTGAGTCCAATC 324
Query 302 GTCTATTTGAG-AGATTAAGAGAAGCTGAAAGAGAACGGCTTAGCAACATGGAAGAGCTC 360
||||||||||| || ||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 325 GTCTATTTGAGAAG-TTACGAGAAACTGAAAGAGAACGACTTAGCAACATGGAAGAGCTC 383
Query 361 GAGAGAAAGGCTAATGTACAATTAGAAAGGCAGCTTGTTATGGCTTCAGATTGGAGTAGA 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 384 GAGAGAAAGGCTAATGTACAATTAGAAAGGCAGCTTGTTATGGCATCAGATTGGAGTAGA 443
Query 421 ACATTGTTAACCATGCGTGGCAAGTTAAAAGGAACAGAATGGGATCCTGAAACCTCTCAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ACATTGTTAACCATGCGTGGCAAGTTAAAAGGAACAGAATGGGATCCTGAAACCTCTCAC 503
Query 481 CGGATCAATTTTAGTGATTTTATGAAGCTCTTAGATTCCAACAGTGTTCAGTACATGGAA 540
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 504 CGTATCAATTTTAGTGATTTTATGAAGCTCTTAGATTCCAACAGTGTTCAATACATGGAA 563
Query 541 TATTCAAATTACGGACAGACGATATCAGTGATATTGCCTTATTATAAAGATGGGGAGCCC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TATTCAAATTACGGACAGACGATATCAGTGATATTGCCTTATTATAAAGATGGGGAGCCC 623
Query 601 CAAGGAGAAGAAGAAAACTCGAAAAAGGAGATAATTTTCCGTCGTCACATTGTGGACCGA 660
| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 CTAGGAGAAGAAGAAGATTCGAAAAAGGAGATAATTTTCCGTCGTCACATTGTGGACCGA 683
Query 661 ATGCCAATTGATGGTTGGAATGATGTATGGAAGAAGTTGCATCAGCAAATAGTCAACGTA 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 684 ATGCCAATTGATGGTTGGAATGATGTATGGAAGAAGTTGCATCAGCAGATAGTAAACGTA 743
Query 721 GAGGTTTTTAATGTAGATGTGGTTCCAGCTGAAGTCTATACTACAGTTGCCACTTTTGTG 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GAGGTTTTCAATGTAGATGTGGTTCCAGCTGAAGTCTATACTACAGTTGCCACTTTTGTG 803
Query 781 GTTTGGTCTATGAGACTTGCCCTCTTTGTTTCGCTTTATGTTTGGATCGACAGTATCACG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GTTTGGTCTATGAGACTTGCCCTCTTTGTTTCGCTTTATGTTTGGATCGACAGTATCACG 863
Query 841 AGGCCAATCTATGCCAAGTTAATCCCTTGTGATCTCGGAACCCCTACCAAAAAGATAAGG 900
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AGGCCAATCTATGCCAAACTAATCCCTTGTGATCTCGGAACCCCTACCAAAAAGATAAGG 923
Query 901 CAGCCCCTCAAGCGCCAAGCACTCGGTTCCCTAGGCAAGAGTCGGGCAAAATTTATATCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 CAGCCCCTCAAGCGCCAAGCACTCGGTTCCCTAGGCAAGAGTCGGGCAAAATTTATATCA 983
Query 961 GCAGAGGAGAAAACTGGTGTAACTTTTGATGATTTTGCGGGTCAGGAGTATATAAAGAGG 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 984 GCAGAGGAGAAAACTGGTGTTACTTTTGATGATTTTGCGGGTCAGGAGTATATAAAGAGG 1043
Query 1021 GAATTACAAGAAATTGTGCGAATTTTAAAGAATGATGAGGAATTTCAGAATAAAGGCATT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GAATTACAAGAAATTGTGCGAATTTTAAAGAATGATGAGGAATTTCAGAATAAAGGCATT 1103
Query 1081 TATTGTCCGAAAGGTGTTCTGCTTCATGGACCTCCCGGGACGGGGAAAACTCTGTTGGCC 1140
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 1104 TATTGTCCGAAAGGTGTTCTGCTTCATGGACCTCCCGGAACGGGGAAAACTTTGTTAGCC 1163
Query 1141 AAAGCTATTGCTGGAGAAGCTGGTTTACCTTTCTTCGCGGCAAATGGAACCGACTTTGTT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 AAAGCTATTGCTGGAGAAGCTGGTTTACCTTTCTTCGCGGCAAATGGAACCGACTTTGTT 1223
Query 1201 GAGATGTTTGTAGGAGTGGCTGCATCTCGTGTTAAAGATCTTTTCGCTAGCTCTCGGTCA 1260
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1224 GAGATGTTTGTAGGAGTGGCTGCATCTCGTGTTAAAGATCTTTTTGCTAGCTCTCGGTCA 1283
Query 1261 TATGCGCCATCTATAATCTTTATTGATGAGATTGATGCAATTGGAAGTAAGCGAGGTGGA 1320
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TATGCGCCATCTATAATCTTCATTGATGAGATTGATGCAATTGGAAGTAAGCGAGGTGGA 1343
Query 1321 CCCGATATTGGCGGGGGAGGAGCAGAGAGAGAACAAGGTTTGCTTCAAATATTGACTGAG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 CCCGATATTGGCGGGGGAGGAGCAGAGAGAGAACAAGGTTTGCTTCAAATATTGACTGAG 1403
Query 1381 ATGGATGGATTTAAAGTTACTACATCACAAGTATTAGTCATAGGTGCAACAAATAGATTA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 ATGGATGGATTTAAAGTTACTACATCACAAGTATTAGTCATAGGTGCAACAAATAGATTA 1463
Query 1441 GATATCCTTGATCCTGCTCTCTTGAGAAAAGGTCGCTTCGACAAAATCATAAGAGTTGGT 1500
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 1464 GATATCCTTGATCCTGCTCTATTGAGAAAAGGTCGTTTTGACAAAATCATAAGAGTTGGT 1523
Query 1501 TTACCGTCAAAAGATGGTAGATTGGCAATATTAAAGGTACATGCTAGAAATAAATTCTTT 1560
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1524 TTACCGTCAAAAGATGGTAGATTGGCGATATTAAAGGTACATGCTAGAAATAAATTCTTT 1583
Query 1561 CGATCTGAGGATGAGAAGGAGGAGTTGCTGCAAGAAGTAGCTGAGAACACAGAAGATTTT 1620
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1584 CGATCTGAGGATGAGAAGGAGGAGTTGCTGCAAGAAGTAGCTGAGAACACGGAAGATTTT 1643
Query 1621 ACTGGAGCAGAGCTGCAAAACGTTCTAAATGAAGCTGGAATCTTGACTGCTAGAAAAGAT 1680
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1644 ACCGGAGCAGAACTGCAAAACGTTCTAAATGAAGCTGGAATCTTGACAGCTAGAAAAGAT 1703
Query 1681 TTAGATTACATTGGAAGAGAAGAACTCCTAGAGGCGCTTAAGCGGCAAAAAGGGACATTT 1740
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1704 TTGGATTACATTGGAAGAGAAGAACTCCTTGAGGCGCTTAAGCGGCAAAAAGGGACATTT 1763
Query 1741 GAGACTGGACAAGAAGATAGTACAGAAGTCCCAGAGGAACTGAAGTTGAGATTGGCTTAC 1800
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1764 GAGACTGGACAAGAAGATAGTACTGAAGTTCCAGAGGAACTGAAGTTGAGATTGGCTTAC 1823
Query 1801 CGAGAAGCAGCTGTTGCTGTTCTTGCTTGTTATCTCCCAGATCAGTACCGTCCAATCAGC 1860
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1824 CGAGAAGCAGCTGTTGCTGTTCTTGCTTGTTATCTCCCAGATCAATATCGTCCAATCAGC 1883
Query 1861 GAGACTGACATAAACTCGATCCGAAGCCAACCAAACCTGCGTTACACTGAAACTTCAGGA 1920
|||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1884 GAGACTGACATAAACTCGATTAGAAGCCAACCAAATATGCGTTACTCTGAAACTTCAGGA 1943
Query 1921 AGAGTTTTTGCGAGAAAGTCTGATTATGTAAACTCAATAATCCGTGCATGTGCTCCTAGA 1980
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1944 AGAGTTTTTGCGAGAAAGTCAGATTATGTGAACTCAATAATCCGTGCATGTGCTCCTAGA 2003
Query 1981 GTAGTTGAAGAAGAGATGTTTGGAATAGAAAACTTGTGTTGGATCTCTGCTAAGTCTACT 2040
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2004 GTAGTTGAAGAAGAGATGTTTGGAATAGAAAACCTGTGTTGGATCTCTGCTAAGTCTACT 2063
Query 2041 TTAGAAGCTTCACAGCAAGCGGAATTTCTGATTCTCCAGACGGGAATGACTGCTTTTGGA 2100
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2064 TTAGAAGCTTCACAGCGAGCGGAATTTCTGATTCTTCAGACGGGAATGACTGCTTTTGGA 2123
Query 2101 AAAGCTTATTACCGAAACCAAAGAGACCTCGTTCCAAATCTTGTTCCGAAACTTGAGGCA 2160
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2124 AAAGCTTATTACCGAAACCAAAGAGACCTCGTTCCTAATCTTGTTCCGAAACTTGAGGCA 2183
Query 2161 TTACGCGATGAATACATGCGGTTTGCTGTTGAGAAATGCTCATCAATCTTACAAGAGTAT 2220
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2184 TTACGCGATGAGTACATGAGGTTTGCTGTTGAGAAATGCTCATCAATCTTACAAGAGTAT 2243
Query 2221 CAATCAGCACTTGAAGAAATCACAGATGTGCTTCTTGAGAAGGGAGAAATCAAAGCCGAA 2280
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2244 CAATCAGCCCTTGAAGAAATCACAGATGTGCTTCTTGAGAAAGGAGAAATCAAAGCCGAT 2303
Query 2281 GAAATTTGGAACATTTACAATACAGCTCCAAGGATTCCTCAAAAACCTGTGAGACCTGTC 2340
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2304 GAAATCTGGAACATTTACAACACAGCTCCAAGGATTCCTCAAAAACCCGTGAGACCTGTC 2363
Query 2341 GATGAATATGGAGCTTTAATCTATGCGGGAAGATGGGGAATTCACGGTGTATCACTTCCT 2400
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2364 GATGAGTATGGAGCTTTAATCTATGCGGGAAGATGGGGAATTCACGGTGTATCGCTTCCT 2423
Query 2401 GGAAGAGTAACGTTTTCACCAGGAAACATCGGTTTTGCAACATTTGGAGCTCCTCGTCCC 2460
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2424 GGAAGAGTAACATTTTCACCAGGAAACATTGGTTTTGCAACATTTGGAGCTCCTCGTCCC 2483
Query 2461 ATGGAGACACAAATCATTAGTGATGACACATGGAAACTAGTGGATGAGATTTGGGATAAA 2520
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2484 ATGGAGACACAAATCATCAGCGATGACACATGGAAACTAGTGGATGAGATTTGGGATAAA 2543
Query 2521 AAGGTTGAAGAAATCAAAACAGAAGCTGTAATTCAAGTTGAAGAAGAAAAGAAGAAACCT 2580
|||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct 2544 AAGGTTGAAGAAATCAAAGCAGAAGCTGTTATTCAAATTGAAGAAGAAAAGAAGAAACCT 2603
Query 2581 CAGATTTTGATGGCAACCCATTTCTTTTAAAACCATTTCTCAGTTTTGCCGTCTCAAGAA 2640
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 2604 CAGATTTTGATGGCAACCCATTTCTTTTAAAATCATTTTTCAGTTTTGCGGTCTCAAGAA 2663
Query 2641 CATCAAA 2647
|||||||
Sbjct 2664 CATCAAA 2670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136253417188
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5